While here, clean up a lot of pkglint; it appears that the manual
substitutions in the makefile got rolled into several of the patches
at some point. Various problems remain (e.g. the build system runs
/usr/bin/make explicitly in a number of places; plus the manual
substitutions should be tidied away) but this should cover the most
serious ones.
PKGREVISION++.
Circos is a Perl application for the generation of publication-quality,
circularly composited renditions of genomic data and related annotations.
Circos is particularly suited for visualizing alignments, conservation and
intra and inter-chromosomal relationships.
Approved by: groo
Comix 4.0.4
- Applied a workaround for a bug that caused the "Open" dialog to crash
when trying to open a file when the file type filter had been reset to
blank. This bug seems to only appear on some systems, probably depending
on the installed GTK+ version.
- Fixed a bug that caused the error message for unfulfilled dependencies
to not be printed properly.
- The rar/unrar program is now invoked in such a way as to keep broken
or incomplete files extracted from RAR archives, since Comix might be
able to display parts of these files anyway.
so that it sorts correctly, and leave 1.18.1 available for a possible
future upstream bugfix point release.
Changes since 1.18:
incorporate the fix in our patch-aa
(No need to pull to pkgsrc-stable; this is the same as 1.18nb2)
changes:
-important bugfixes
-improved CID support
There was an ABI breakage between 2.3.7 and 2.3.8 which was reverted
in 2.3.9. The public 'PS_FontInfoRec' structure was expanded and
then shrunk. Applications compiled against 2.3.8 should work fine
with 2.3.9. Applications compiled against the new 2.3.9 can
theoretically exhibit problems if run against a 2.3.8 binary, if
some PS_FontInfo stuff is used. See the freetype release notes
for details. I didn't find any suspects for now. If one is found,
it should be changed to require 2.3.9, and PKGREV bumped.
- Updating package for p5 module Image::Size to 3.2
- Add license artistic 2.0
Upstream changes:
3.2 Monday February 23, 2009, 05:00:00 AM -0800
* lib/Image/Size.pm
* t/all.t
Make the package buildable in a pure-Perl software stack. Per
RT ticket #42930, make Compress::Zlib optional, so that those
who do not need it are not required to install it. Updated the
test around the compressed-SWF file to skip if Compress::Zlib
is absent.
* Build.PL (restored)
* ChangeLog (deleted)
* ChangeLog.xml (added)
* MANIFEST (deleted)
* Makefile.PL (deleted)
* README.Win32 (deleted)
* etc/ChangeLogML.xsd (added)
Making large-scale house-keeping changes to the build/dist
process. Replace ChangeLog (plain-text) with a ChangeLogML file
created from the CVS/SVN history and hand-adjusted; add the XSD
for ChangeLogML; restore Build.PL and heavily enhance; and
remove README.Win32, Makefile.PL and MANIFEST.
* lib/Image/Size.pm
Per RT ticket #43452, make the cache visible outside the
lexical scope of the module This allows the hash to be used
with packages like IPC::Shareable or IPC::MM to enable sharing
the cache between processes. Added extra documentation of this,
and a new section describing approaches to cache-sharing.
Transaction revision: 136
* imgsize
* lib/Image/Size.pm
Fix URL/specification of the license info for LGPL.
- Updating module to 2.41
Upstream changes:
2.41 Added backend support for grouping features in GD::SVG module.
2.40 ** Do not use - contains a bug **
2.39 Makefile.PL will refuse to run if the proper version of libgd is
unavailable.
2.38 Fixed bizarre warning about /usr/include/gd.h != /usr/include/gd.h.
2.37 GD/Image.pm did not bring in croak() properly, meaning that
incorrect error messages are printed out when any of the
newFromXXX() calls are made.
2.36 Instructions on using gdAntiAliased with palette images.
- removed packages p5-IO-Compress-Base, p5-IO-Compress-Zlib,
p5-IO-Compress-Bzip2 and p5-Compress-Zlib because they are
merged into p5-IO-Compress
- Updated dependend packages to depend on p5-IO-Compress
and bump PKGREVISION
Upstream changes:
2.017 30 March 2009
* Merged IO-Compress-Base, IO-Compress-Bzip2, IO-Compress-Zlib &
Compress-Zlib into IO-Compress.
* The interface to Compress-Raw-Zlib now uses the new LimitOutput
feature. This will make all of the zlib-related IO-Compress modules
less greedy in their memory consumption.
* Removed MAN3PODS from Makefile.PL
* A few changes to get the test harness to work on VMS courtesy of
Craig. A. Berry.
* IO::Compress::Base & IO::Uncompress::Base
Downgraded some croaks in the constructors to just set $! (by letting
the code attempt to open a file and fail).
This makes the behavior more consistent to a standard open.
[RT #42657]
* IO::Uncompress::Base
Doing a seek with MultiStream could drop some of the uncompressed
data. Fixed.
* IO::Compress::Zip
- Fixed problem with the uncompressed & uncompressed fields when
zip64 is enabled. They were set to 0x0000FFFF instead of
0xFFFFFFFF. Also the ZIP64 extra field was 4 bytes short.
Problem spotted by Dino Chiesa.
* IO::Uncompress::Unzip
- use POSIX::mktime instead of Time::Local::timelocal to convert
the zip DOS time field into Unix time.
* Compress::Zlib
- Documented Compress::Zlib::zlib_version()
The clutter build failed because GLX_FRONT_LEFT_EXT and
GLX_BIND_TO_TEXTURE_RGBA_EXT were not defined. (I had MesaLib-6.4.2nb3
installed.)
So add BUILDLINK_API_DEPENDS.MesaLib+= MesaLib>=7.0
* Changes in libotf 0.9.9
** New function OTF_get_variation_glyphs returns glyphs selected by
variation selectors.
** The funciton OTF_drive_cmap handles a variation selector.
** The example program `otfview' can handle variation selectors.
** The function OTF_drive_gpos is obsolte now, and the new function
OTF_drive_gpos2 should be used instead. See the comment of the member
"glyph_id" of type "OTF_Glyph" for the detail.
** If a font doesn't have GDEF table, automatically synthesized GDEF
table is used.
From NEWS:
New in ver 1.18
===============
Changes in API
----------------------
*none*
Implementation
----------------------
All errors moved to fatal, since there is no easy recovery strategy
Vulnerability fixes on cmsio1.c
Status check, many functions now check the status when calling other functions. Improved robustness against ill-formed profiles.
_cmsSaveProfile didn't copy tags from a file based profile, fixed.
Utilities
----------
icctrans: CMYKcm support wrongly implemented, fixed.
icclink: linking 3 to 7 channels didn't work in some cases, fixed.
digiKam 0.9.5-rc1 - Release date: 2009-03-15
NEW FEATURES:
General : Internal CImg library updated to 1.3.0.
BUGFIXES FROM KDE BUGZILLA (alias B.K.O | http://bugs.kde.org):
001 ==> 169037 : Crash when tagging photos.
002 ==> 173314 : digiKam crashes while exiting the photo-editing mode in KDE 3.5.10.
003 ==> 185279 : Raw pictures from Panasonic LX2 have totally wrong colours in digikam show modus.
