Commit graph

4302 commits

Author SHA1 Message Date
taca
3f5b47a01d math/ruby-spreadsheet: update to 1.1.7
### 1.1.7 / 15.03.2018

commit 34ece5f4e7ab2907c4a8809d96ef2a33b7ccd4b5
Author: Maarten Brouwers <github@murb.nl>
Date:   Thu Mar 15 15:10:23 2018 +0100

* shadowing outer local variable - i

* Running rake resulted in the following warning: `lib/spreadsheet/worksheet.rb:345: warning: shadowing outer local variable - i`; this patch fixes that.
2018-03-17 14:19:38 +00:00
khorben
ad0014e4ab Add py-claripy 2018-03-15 02:25:13 +00:00
khorben
b425c9a85f Import py-claripy version 7.8.2.21 from wip
Claripy is an abstracted constraint-solving wrapper.
It is maintained by the angr organization on GitHub.

General usage is similar to z3.
2018-03-15 02:24:18 +00:00
taca
c8a6f9eea9 math/ruby-spreadsheet: update to 1.1.6
### 1.1.6 / 12.03.2018

Author: Todd Hambley <thambley@travelleaders.com>
Date:   Mon Mar 12 14:20:39 2018 -0400

* fix reject for ruby 1.8.7
* fix using invalid code pages when writing workbook

### 1.1.5 / 20.11.2017

Author: Paco Guzmán <pacoguzman@users.noreply.github.com>
Date:   Sun Nov 19 18:10:57 2017 +0100

* Avoid creating a class variable, that variable cannot be garbage collected and it retains a lot of memory
2018-03-14 14:48:18 +00:00
khorben
e93dd579a6 Re-introduce support for NetBSD in src/util/scoped_timer.cpp
I forgot to patch this part in the latest update; sorry.
This has now been submitted upstream as well.

Originally from dholland@.

Compile-tested on NetBSD/amd64.

Bump PKGREVISION.
2018-03-13 21:20:34 +00:00
adam
cf6db06059 py-numpy: updated to 1.14.2
1.14.2:
This is a bugfix release for some bugs reported following the 1.14.1 release. The major
problems dealt with are as follows.

Residual bugs in the new array printing functionality.
Regression resulting in a relocation problem with shared library.
Improved PyPy compatibility.
2018-03-13 11:34:08 +00:00
khorben
0fcaf2ba4e Add py-z3 2018-03-13 00:36:57 +00:00
khorben
5b6c355231 Import a package for the Python bindings for math/z3 2018-03-13 00:36:04 +00:00
khorben
06f3bfef4e Remove the references to wip 2018-03-13 00:34:02 +00:00
khorben
ff87f525e7 Update math/z3 to version 4.5.0
From the release notes:

    New features:
    - New theories of strings and sequences.
    - Incremental consequence finder for finite domains.
    - CMake build system (thanks @delcypher).
    - Updated and improved OCaml API (thanks @martin-neuhaeusser).
    - Updated and improved Java API (thanks @cheshire).
    - New resource limit facilities to avoid non-deterministic timeout behaviour.
    - New bit-vector simplification and ackermannization tactics (thanks @MikolasJanota, @nunoplopes).
    - QSAT: a new solver for quantified arithmetic problems. See:
      Bjorner, Janota: Playing with Quantified Satisfaction, LPAR 2016.

    A multitude of bugs has been fixed.

I am about to commit a separate package for the Python bindings.

Coordinated with dholland@
2018-03-13 00:31:16 +00:00
wiz
c57215a7b2 Recursive bumps for fontconfig and libzip dependency changes. 2018-03-12 11:15:24 +00:00
maya
f7aa0b7933 p5-Algorithm-BloomFilter: new package
Perl5 module that implements a simple bloom filter in C/XS
2018-03-11 11:25:34 +00:00
dholland
b2fe40b93b Requires ocaml-num with ocaml 4.06 2018-03-11 06:14:45 +00:00
minskim
466171cdd0 math/R-RcppEigen: Update to 0.3.3.4.0
Changes:
- Updated to version 3.3.4 of Eigen
- Condition long long use on C++11.
- Pragmas for g++ & clang to suppress diagnostics messages are
  disabled per CRAN Policy; use -Wno-ignored-attributes to quieten.
2018-03-09 20:27:07 +00:00
minskim
0e4523169d Remove dependencies unused if the Accelerate framework exists
Bump PKGREVISION.
2018-03-08 19:39:17 +00:00
minskim
852617819e math/R: Add missing dependencies to buildlink3.mk 2018-03-07 23:16:03 +00:00
minskim
d22e4b13c9 math/R-nloptr: Use pkg-config to set link options properly 2018-03-07 19:18:56 +00:00
minskim
53ff94b95e math/R: Use the Accelerate framework if it is available
This package was already using libblas from the Accelerate framework
on Darwin through /usr/lib/libblas.dylib. This change makes it
explicit and removes unnecessary dependencies on math/blas and
math/lapack.

Bump PKGREVISION.
2018-03-06 01:43:44 +00:00
minskim
21557db99c math/Makefile: Add R-emdbook 2018-03-05 16:57:38 +00:00
minskim
9fce32c527 math/R-emdbook: Import version 1.3.9
Auxiliary functions and data sets for "Ecological Models and Data", a
book presenting maximum likelihood estimation and related topics for
ecologists.
2018-03-05 16:57:36 +00:00
minskim
bad6273f08 math/Makefile: Add R-bbmle 2018-03-05 16:56:29 +00:00
minskim
a9f6698571 math/R-bbmle: Import version 1.0.20
Methods and functions for fitting maximum likelihood models in R. This
package modifies and extends the 'mle' classes in the 'stats4'
package.
2018-03-05 16:56:27 +00:00
minskim
d3af5312ac math/Makefile: Add R-numDeriv 2018-03-05 16:52:16 +00:00
minskim
6f2db2f5bd math/R-numDeriv: Import version 2016.8.1
Methods for calculating (usually) accurate numerical first and second
order derivatives. Accurate calculations are done using 'Richardson”s'
extrapolation or, when applicable, a complex step derivative is
available. A simple difference method is also provided. Simple
difference is (usually) less accurate but is much quicker than
'Richardson”s' extrapolation and provides a useful cross-check.
Methods are provided for real scalar and vector valued functions.
2018-03-05 16:52:13 +00:00
bsiegert
9ab6e4ca7b Revbump all Go packages after Go 1.10 update. 2018-03-04 15:52:12 +00:00
minskim
aa6a477bae math/Makefile: Add R-coda 2018-03-04 01:03:34 +00:00
minskim
ec8aadb355 math/R-coda: Import version 0.19.1
coda provides functions for summarizing and plotting the output from
Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic
tests of convergence to the equilibrium distribution of the Markov
chain.
2018-03-04 01:03:32 +00:00
minskim
d08a0f06e9 math/Makefile: Add R-poweRlaw 2018-03-03 01:23:31 +00:00
minskim
866d097aed math/R-poweRlaw: Import version 0.70.1
The poweRlaw package is an implementation of maximum likelihood
estimators for a variety of heavy tailed distributions, including both
the discrete and continuous power law distributions. Additionally, a
goodness-of-fit based approach is used to estimate the lower cut-off
for the scaling region.
2018-03-03 01:23:29 +00:00
minskim
8fc3ee096c math/Makefile: Add R-prob 2018-03-02 19:04:16 +00:00
minskim
2a8255697e math/R-prob: Import version 1.0.0
A framework for performing elementary probability calculations on
finite sample spaces, which may be represented by data frames or
lists.  Functionality includes setting up sample spaces, counting
tools, defining probability spaces, performing set algebra,
calculating probability and conditional probability, tools for
simulation and checking the law of large numbers, adding random
variables, and finding marginal distributions.  Characteristic
functions for all base R distributions are included.
2018-03-02 19:04:13 +00:00
minskim
ed7122c634 math/R-DBI: Update to 0.7
Notable changes since 0.3.1:
- dbGetInfo() gains a default method.
- New generic dbBind() for binding values to a parameterised query.
- DBI gains a number of SQL generation functions.
- dbDataType() maps character values to "TEXT" by default.
- The default implementation of dbQuoteString() doesn’t call
  encodeString() anymore.
- Deprecated dbDriver() and dbUnloadDriver().
- Import updated specs from DBItest.
- Require R>=3.0.0.
2018-02-28 17:45:59 +00:00
taca
c7ded1c93a math/pear-Numbers_Words: update to 0.18.2
0.18.2							2018-02-13 09:05 UTC

Changelog:

* PR #32: fix "count(): Parameter must be an array or an object that
  implements Countable" with PHP 7.2
2018-02-28 16:01:41 +00:00
wiz
2621957e4a z3: forbid python 3.x
First complains about indentation problems, then about reading
non-ASCII bytes.
2018-02-27 08:34:16 +00:00
adam
260fa030d1 py-lmfit: updated to 0.9.8
0.9.8:
update doc for 5 digit-precision fit statistics
increase default precision for chi-square, etc from 3 to 5
2018-02-27 06:40:07 +00:00
maya
de5a4e9be5 mpfr: force disable float128 on netbsd8 too (tested 8.0) 2018-02-25 15:03:45 +00:00
khorben
ddf5c47752 Add support for DESTDIR
Fix building math/z3 in privileged mode when not building as root:
ocamlfind: Cannot mkdir /usr/pkg/lib/ocaml/site-lib/Z3: Permission denied

This now uses the option -destdir when calling ocamlfind(1). It also
includes a workaround for what might be a bug in ocamlfind(1), where it
also wants to update ld.conf in spite of specifying -destdir.

Tested on NetBSD/amd64.

ok dholland@
2018-02-23 17:04:43 +00:00
adam
cbfb4423a0 py-numpy: updated to 1.14.1
NumPy 1.14.1 Release Notes

This is a bugfix release for some problems reported following the 1.14.0 release. The major
problems fixed are the following.

Problems with the new array printing, particularly the printing of complex
values, Please report any additional problems that may turn up.
Problems with np.einsum due to the new optimized=True default. Some
fixes for optimization have been applied and optimize=False is now the
default.
The sort order in np.unique when axis=<some-number> will now always
be lexicographic in the subarray elements. In previous NumPy versions there
was an optimization that could result in sorting the subarrays as unsigned
byte strings.
The change in 1.14.0 that multi-field indexing of structured arrays returns a
view instead of a copy has been reverted but remains on track for NumPy 1.15.
Affected users should read the 1.14.1 Numpy User Guide section
"basics/structured arrays/accessing multiple fields" for advice on how to
manage this transition.
2018-02-22 10:50:47 +00:00
fhajny
7b85878f79 Import Math::Int64 0.54 as math/p5-Math-Int64.
This module adds support for 64 bit integers, signed and unsigned, to Perl.
2018-02-20 14:04:23 +00:00
ryoon
607cf3b0b0 Expand a workaround for NetBSD/amd64 0-7 to non-amd64 architectures 2018-02-19 11:52:56 +00:00
minskim
cedf90547d math/Makefile: Add R-reshape2 2018-02-12 19:50:30 +00:00
minskim
db685a8b76 math/R-reshape2: Import version 1.4.3
Flexibly restructure and aggregate data using just two functions: melt
and 'dcast' (or 'acast').
2018-02-12 19:49:56 +00:00
wiz
00921dccb9 mpfr: update to 4.0.1.
Changes from version 4.0.0 to version 4.0.1:
- Improved MPFR manual.
- Improved __GMP_CC and __GMP_CFLAGS retrieval (in particular for MS Windows).
- Fixed a build failure on some platforms when --with-gmp-build is used.
- Bug fixes (see ChangeLog file), in particular in mpfr_div_ui, which
  could yield an incorrectly rounded result to nearest when using
  different precisions; this bug had been present since the introduction
  of mpfr_div_ui, and in MPFR 4.0.0, it was affecting mpfr_div too.
- New: optional "make check-exported-symbols", mainly for the MPFR developers
  and binary distributions, to check that MPFR does not define symbols with a
  GMP reserved prefix (experimental).
2018-02-11 16:35:01 +00:00
wiz
ad2a7ebeb0 gnumeric110: update HOMEPAGE. 2018-02-11 15:42:36 +00:00
wiz
ab86189b18 gnumeric: update HOMEPAGE. 2018-02-11 15:42:18 +00:00
minskim
2d4dce4b2b math/R-XML: Update to 3.89.1.9
Bug fixes only.
2018-02-09 00:19:24 +00:00
minskim
e0062d82db math/Makefile: Add R-gtable 2018-02-07 20:49:19 +00:00
minskim
41a8e8a637 math/R-gtable: Import version 0.2.0
Tools to make it easier to work with "tables" of 'grobs'.
2018-02-07 20:48:49 +00:00
minskim
72865eb0a7 math/Makefile: Add R-fracdiff 2018-02-07 01:11:50 +00:00
minskim
e9954f8de0 math/R-fracdiff: Import version 1.4.2
Maximum likelihood estimation of the parameters of a fractionally
differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl. Statistics,
1989).
2018-02-07 01:11:18 +00:00