Commit graph

180908 commits

Author SHA1 Message Date
hans
b0db8ab390 USE_TOOLS=unzip
Require flex>=2.5.35 by FLEX_REQD. Tested on NetBSD/i386 5.1.
2012-01-14 03:28:32 +00:00
hans
0f6f33e89d Force gsed only on NetBSD. 2012-01-14 03:24:15 +00:00
hans
7c4fa22a36 USE_TOOLS bash and unzip 2012-01-14 03:16:57 +00:00
hans
80a11d4b67 USE_TOOLS=unzip instead of DEPENDS/BUILD_DEPENDS. 2012-01-14 03:13:03 +00:00
hans
c289f5a5c1 USE_TOOLS instead of DEPENDS for gtar and unzip. Unset
TOOLS_PLATFORM.unzip on NetBSD to force unzip from pkgsrc.
2012-01-14 02:46:26 +00:00
hans
c29fc26cd8 Use native zip etc. if available. 2012-01-14 02:11:00 +00:00
hans
bbd52967db Convert to USE_TOOLS=zip. 2012-01-14 02:09:35 +00:00
hans
61a093ec38 Support zip and related utilities as host tools. 2012-01-14 01:52:14 +00:00
hans
3a3fe8e873 Convert the remaining few packages that explicitly set DEPENDS or
BUILD_DEPENDS on bison to USE_TOOLS=bison. The minimum bison version
required in mk/tools/bison.mk is good enough for all of them.
2012-01-14 00:51:36 +00:00
hans
cb5897adcb Add bison.mk, derived from flex.mk, to allow setting a minimum bison
version required.
2012-01-14 00:47:53 +00:00
asau
47d1305132 Updated biology/gromacs to 4.5.5 2012-01-14 00:38:43 +00:00
asau
7eece3338b Update to Gromacs 4.5.5
Notable changes in Gromacs 4.5.5:

  * Improved pdb2gmx -chainsep option and reintroduced the -merge option.
  * Fixed mdrun file appending truncating files to 0 bytes when
    continuation runs stopped before writing new output.
  * Fixed COM pulling with multiple constraints checking the
    convergence of one constraint instead of all.
  * Fixed some dihedrals in sugars in Gromos53a5/6 working on the wrong atoms.
  * AmberGS force field is now based on Amber94 instead of Amber96.
  * Moved hydrogens in Charmm27 protein termini to separate
    charge groups and added ACE and CT3 residue types.
  * Many small fixes which avoid termination with fatal errors
    or crashes in mdrun and tools.
  * Many small updates to the manual pages of programs.
2012-01-14 00:38:18 +00:00
drochner
b2c21751f8 Since this is thought to be a plug-in replacement for pkgsrc/jpeg,
it should provide the jpeg-8 API/ABI rather than the -6b one.
So switch to 1.1.0 with the jpeg8 "configure" option.
Tested to be binary compatible on i386, at least for simple
image viewers.
being here, add "test" target
2012-01-13 20:15:33 +00:00
morr
824ef9057f Note update of devel/bison 2012-01-13 17:14:21 +00:00
morr
3039d72dc2 Add missing converters/libiconv buildlink, fixes PR 45826.
Bump PKGREVISION
2012-01-13 17:13:39 +00:00
ryoon
d92615922f Updated x11/kterm to 6.2.0nb19 2012-01-13 16:59:46 +00:00
ryoon
bbbdc66f06 Bump PKGREVISION.
* Update termios patch.
* Restore wheel mouse scroll support.
* Remove personal setting; patch-KTerm.ad.
2012-01-13 16:53:28 +00:00
taca
ec614e3c3b Note update of ISC DHCP4 related packages to 4.2.3p2.
net/isc-dhcp4
	net/isc-dhclient4
	net/isc-dhcpd4
	net/isc-dhcrelay4
2012-01-13 13:44:00 +00:00
taca
e5b68afbb6 Update isc-dhcp4 package to 4.2.3p2. (ISC DHCP 4.2.3-P2).
Alwo update isc-dhclient4, isc-dhcpd4 and isc-dhcrelay4.


			Changes since 4.2.3-P1

! Modify the DDNS handling code.  In a previous patch we added logging
  code to the DDNS handling.  This code included a bug that caused it
  to attempt to dereference a NULL pointer and eventually segfault.
  While reviewing the code as we addressed this problem, we determined
  that some of the updates to the lease structures would not work as
  planned since the structures being updated were in the process of
  being freed: these updates were removed.  In addition we removed an
  incorrect call to the DDNS removal function that could cause a failure
  during the removal of DDNS information from the DNS server.
  Thanks to Jasper Jongmans for reporting this issue.
  [ISC-Bugs #27078]
  CVE: CVE-2011-4868
2012-01-13 13:42:09 +00:00
drochner
cf18e5aee4 mention recent updates/additions 2012-01-13 13:09:58 +00:00
obache
6e8804fb6b Note removal of lang/py-html-docs 2012-01-13 12:24:00 +00:00
obache
f7ff115433 Remove py-html-docs from pkgsrc.
This package is a ancient package before support multi python version variants.
We can use py*-html-docs packages for each variants as it is now.
2012-01-13 12:20:50 +00:00
ghen
7481caf7a4 Updated net/powerdns-* to 2.9.22.5. 2012-01-13 12:15:24 +00:00
ghen
8e2fed10ba Upgrade to PowerDNS 2.9.22.5, including a fix for CVE-2012-0206. 2012-01-13 12:12:48 +00:00
drochner
8b679b9d66 remove unnecessary patches 2012-01-13 11:38:44 +00:00
obache
0717882952 Update mediawiki TODO entry. 2012-01-13 11:34:16 +00:00
obache
9198be2fc4 remove a redundant entry. 2012-01-13 11:33:22 +00:00
obache
a431de26b7 Updated www/mediawiki to 1.17.2 2012-01-13 11:32:04 +00:00
obache
2f73001e54 Update mediawiki to 1.17.2.
== MediaWiki 1.17.2 ==
2012-01-11

This a maintenance and security release of the MediaWiki 1.17 branch.

=== Security changes ===
* (bug 33117) prop=revisions allows deleted text to be exposed through cache pollution.

=== Changes since 1.17.1 ===
* (bug 32709) Private Wiki users were always taken to Special:Badtitle on login.

== MediaWiki 1.17.1 ==

2011-11-24

This a maintenance and security release of the MediaWiki 1.17 branch.

=== Security changes ===
* (bug 32276) Skins were generating output using the internal page title which
  would allow anonymous users to determine wheter a page exists, potentially
  leaking private data. In fact, the curid and oldid request parameters would
  allow page titles to be enumerated even when they are not guessable.
* (bug 32616) action=ajax requests were dispatched to the relevant internal
  functions without any read permission checks being done. This could lead to
  data leakage on private wikis.
2012-01-13 11:27:17 +00:00
obache
1f4649c8a2 Recursive bump from audio/libaudiofile, x11/qt4-libs and x11/qt4-tools ABI bump. 2012-01-13 10:54:43 +00:00
obache
9bd34dfa7e need to buildlink with openssl for QtNetwork. 2012-01-13 10:47:18 +00:00
gdt
18ffa76375 Updated filesystems/tahoe-lafs to 1.9.1 2012-01-13 01:22:24 +00:00
gdt
4b192070e9 Update to 1.9.1 (security fix):
Release 1.9.1 (2012-01-12)
--------------------------

Security-related Bugfix
'''''''''''''''''''''''

- Fix flaw that would allow servers to cause undetected corruption when
  retrieving the contents of mutable files (both SDMF and MDMF). (`#1654`_)

.. _`#1654`: https://tahoe-lafs.org/trac/tahoe-lafs/ticket/1654
2012-01-13 01:14:56 +00:00
adam
7d0d488f51 Updated x11/qt4 to 4.8.0 2012-01-12 23:04:17 +00:00
adam
2de1f39bb0 Changes 4.8.0:
Featuring Qt Platform Abstraction, threaded OpenGL support, multithreaded HTTP
and optimized file system access.
2012-01-12 22:59:58 +00:00
asau
e285f672b4 This package's licence is NOT a "modified BSD" in a common sense.
Reset LICENSE, bump package revision.
2012-01-12 22:41:21 +00:00
hans
5d1582d7a0 Fix build on SunOS. 2012-01-12 21:13:17 +00:00
pettai
1986dd6943 Updated security/oath-toolkit to 1.10.5 2012-01-12 20:18:25 +00:00
pettai
7e23540542 Version 1.10.5
* Build fixes from Linus Nordberg and Arno Hautala.
* Update gnulib files.
2012-01-12 20:17:47 +00:00
pettai
2b2cec1ddd Updated www/ap2-authn-otp to 1.1.4 2012-01-12 20:11:49 +00:00
pettai
6daa1b88e9 Version 1.1.4:
- Always allow stale time-based offsets to re-synchronize (issue #14)
    - Added "OTPAuthMaxOTPFailure" to lock accounts after repeated wrong OTP's
2012-01-12 20:04:25 +00:00
joerg
6fe5e8e1d1 + py-django-mptt
+ py-django-sekizai
2012-01-12 18:29:12 +00:00
joerg
d4c9257e50 Simplify. Don't allow Python 3 due to unsupported setuptools dependency. 2012-01-12 18:28:30 +00:00
joerg
76fcbe4399 py-sqlite3 doesn't exist for Python 2.4. 2012-01-12 18:27:30 +00:00
joerg
f67d8818e2 Catch up with PHP 5.3 base. 2012-01-12 18:25:50 +00:00
adam
094640afad Updated graphics/pngcrush to 1.7.24; audio/libaudiofile to 0.3.3; databases/mysql55-{client,server} to 5.5.20; databases/mysql51-{client,server} to 5.1.61 2012-01-12 17:42:52 +00:00
adam
34b96eb158 Changes 5.1.61:
* InnoDB Storage Engine: Issuing INSERT...ON DUPLICATE KEY statements for
  InnoDB tables from concurrent threads could cause a deadlock, particularly
  with the INSERT...ON DUPLICATE KEY UPDATE form. The fix avoids deadlocks
  caused by the same row being accessed by more than one transaction. Deadlocks
  could still occur when multiple rows are inserted and updated simultaneously
  by different transactions in inconsistent order; those types of deadlocks
  require the standard error handling on the application side, of re-trying the
  transaction.
* An incorrect InnoDB assertion could cause the server to halt. This issue only
  affected debug builds. The assertion referenced the source file btr0pcur.ic
  and the variable cursor->pos_state.
* The handle_segfault() signal-handler code in mysqld could itself crash due to
  calling unsafe functions.
* ARCHIVE tables with NULL columns could cause server crashes or become corrupt
  under concurrent load.
* Enabling myisam_use_mmap could cause the server to crash.
* Concurrent access to ARCHIVE tables could cause corruption.
2012-01-12 17:41:21 +00:00
hans
e91a703780 Fix build on SunOS. 2012-01-12 17:16:48 +00:00
hans
a079a9d341 SunOS lacks strmode(), so get it from libnbcompat. 2012-01-12 17:14:45 +00:00
taca
0d9bc90fdb Note update of meta-pkgs/php53-extensions to 5.3.9nb2. 2012-01-12 17:00:24 +00:00