Commit graph

1552 commits

Author SHA1 Message Date
rillig
3525c40187 Explicitly set BUILD_DIRS to emphasize it is different from CONFIGURE_DIRS. 2005-11-04 11:12:29 +00:00
rillig
39dd3b81b8 Added the R packages that have been imported from pkgsrc-wip. 2005-11-04 08:29:08 +00:00
rillig
ee58efeeb5 Imported R-wle from pkgsrc-wip.
Provides approach to robustness via Weighted Likelihood Estimation.
2005-11-04 08:19:34 +00:00
rillig
95aa9c5d49 Imported R-statmod from pkgsrc-wip.
Miscellaneous biostatistical modeling functions.
2005-11-04 08:19:17 +00:00
rillig
6e2cbcf5e1 Imported R-shapefiles from pkgsrc-wip.
Functions to read and write ESRI shapefiles.
2005-11-04 08:19:04 +00:00
rillig
dee980a9f6 Imported R-sgeostat from pkgsrc-wip.
An Object-oriented Framework for Geostatistical Modeling in S+.
2005-11-04 08:18:43 +00:00
rillig
9fcb42548e Imported R-pixmap from pkgsrc-wip.
Functions for import, export, plotting and other manipulations of
bitmapped images.
2005-11-04 08:17:24 +00:00
rillig
cd3c8ac47c Imported R-maps from pkgsrc-wip.
Display of maps. Projection code and larger maps are in separate
packages (mapproj and mapdata).
2005-11-04 08:17:10 +00:00
rillig
8e1eb02a06 Imported R-mapproj from pkgsrc-wip.
Converts latitude/longitude into projected coordinates.
2005-11-04 08:16:02 +00:00
rillig
b3ba4566e9 Imported R-lmm from pkgsrc-wip.
Improved procedures for linear mixed models with R.
2005-11-04 08:15:42 +00:00
rillig
756ce76b8e Imported R-hwde from pkgsrc-wip.
Models and tests for departure from Hardy-Weinberg equilibrium and
independence between loci.

Fits models for genotypic disequilibria, as described in Huttley and
Wilson (2000), Weir (1996) and Weir and Wilson (1986). Contrast terms
are available that account for first order interactions between loci.
2005-11-04 08:15:19 +00:00
rillig
d36e6453d7 Imported R-httpRequest from pkgsrc-wip.
Implements the GET, POST and multipart POST request.
2005-11-04 08:14:44 +00:00
rillig
3fcb66701e Imported R-gstat from pkgsrc-wip.
uni- and multivariable geostatistical modelling, prediction and
simulation

variogram modelling; simple, ordinary and universal point or block
(co)kriging, sequential Gaussian or indicator (co)simulation;
variogram and map plotting utility functions.
2005-11-04 08:14:19 +00:00
rillig
4d8ed13dde Imported R-geoR from pkgsrc-wip.
Geostatistical analysis including likelihood-based and Bayesian methods.
2005-11-04 08:13:43 +00:00
rillig
b037bdefa7 Imported R-genetics from pkgsrc-wip.
Classes and methods for handling genetic data. Includes classes to
represent genotypes and haplotypes at single markers up to multiple
markers on multiple chromosomes. Function include allele frequencies,
flagging homo/heterozygotes, flagging carriers of certain alleles,
estimating and testing for Hardy-Weinberg disequilibrium, estimating
and testing for linkage disequilibrium, ...
2005-11-04 08:13:15 +00:00
rillig
d07a71ecb1 Imported R-date from pkgsrc-wip.
Functions for handling dates.
2005-11-04 08:12:44 +00:00
rillig
6c18c0dd1c Imported R-clim.pact from pkgsrc-wip.
Climate analysis and downscaling package for monthly and daily data.

The package contains R functions for retrieving data, making climate
analysis and downscaling of monthly mean and daily mean global climate
scenarios.
2005-11-04 08:12:21 +00:00
rillig
84d8ed1a71 Imported R-abind from pkgsrc-wip.
Combine multi-dimensional arrays. This is a generalization of cbind
and rbind. Takes a sequence of vectors, matrices, or arrays and
produces a single array of the same or higher dimension.
2005-11-04 08:11:36 +00:00
rillig
a47fef93b5 Imported R-VR from pkgsrc-wip.
Functions and datasets to support Venables and Ripley, 'Modern
Applied Statistics with S' (4th edition).
2005-11-04 08:11:12 +00:00
rillig
bb6b43256f Imported R-Rcmdr from pkgsrc-wip.
A platform-independent basic-statistics GUI (graphical user interface)
for R, based on the tcltk package.
2005-11-04 08:10:09 +00:00
rillig
9d5b65bfa5 Imported R-RArcInfo from pkgsrc-wip.
RArcInfo is a package for the R statistical program  to import
Arc/Info V7.x binary coverages. It is based on the library Avcelib
written by Daniel Morissette.

Currently, RArcInfo supports most of the file formats stored by these
type of coverages. The geographical information (arcs, polygons,
topological relationships, etc.) are stored using lists, but all the
tables containing related information are imported into a data frame.

Once the desired data are imported, the user can draw maps, even filling
the polygons according to the value of a given covariate. Although R is
not designed for heavy G.I.S. work, this package is very helpful to work
with binary coverages inside R.
2005-11-04 08:09:31 +00:00
rillig
9728926677 Imported R-R2HTML from pkgsrc-wip.
Includes HTML function and methods to write in an HTML output.
Thus, making HTML reports is easy. Includes a function that allows
redirection on the fly, which appears to be very usefull for
teaching purpose, as the student can keep a copy of the produced
output to keep all that he/she did during the course
Package comes with a vignette describing how to write HTML reports
for statistical analysis. Finally, a driver for Sweave allows to parse
HTML flat files containing R code and to automatically write the
corresponding outputs (tables and graphs).
2005-11-04 08:09:11 +00:00
rillig
2edf534b8d Imported R-PHYLOGR from pkgsrc-wip.
Manipulation and analysis of phylogenetically simulated data sets and
phylogenetically based analyses using GLS.
2005-11-04 08:08:52 +00:00
rillig
8070f30632 Imported R-Matrix from pkgsrc-wip.
Classes and methods for numerical linear algebra using
Lapack, LDL,TAUCS, Metis, and UMFPACK.
2005-11-04 08:08:01 +00:00
rillig
ed2034cec4 Imported R-ISwR from pkgsrc-wip.
Data sets and scripts for text examples and exercises in
P. Dalgaard (2002), 'Introductory Statistics with R',
Springer Verlag.
2005-11-04 08:06:15 +00:00
rillig
4915248de4 Imported R-GRASS from pkgsrc-wip.
Interface between GRASS 5.0 geographical information system
and R, based on starting R from within the GRASS environment
using values of environment variables set in the GISRC file.
Interface examples should be run outside GRASS, others may
be run within. Wrapper and helper functions are provided for
a range of R functions to match the interface metadata
structures.
2005-11-04 08:05:09 +00:00
rillig
9b326f1877 Imported R-DAAG from pkgsrc-wip.
consists of data sets and functions with our (John Maindonald
and John Braun's) book,  Data Analysis and Graphics Using
R, published by Cambridge University Press.
2005-11-04 08:04:13 +00:00
rillig
ca58a2dfef Imported R-chron from pkgsrc-wip.
Chronological objects which can handle dates and times.
2005-11-04 07:59:58 +00:00
rillig
73b1fc473c Imported R-CGIwithR from wip.
Facilities for the use of R to write CGI scripts.
2005-11-04 07:42:19 +00:00
rillig
a260811277 Added a variable R_HOMEPAGE_BASE that is needed as a replacement for all
those packages that currently use ${MASTER_SITE_R_CRAN:=foo} as their
HOMEPAGE. As the HOMEPAGE is a single URL, not a list of URLs, the
MASTER_SITE variables cannot be used for this.
2005-11-03 12:00:32 +00:00
taca
528c1ecdb0 Delete removed ruby related pacakge's entries. 2005-11-03 06:35:30 +00:00
taca
7b36e0023e Remove packages which supported by ruby16-base (Ruby 1.6.8) pacakge only
and now bundled in ruby18-base pacakges.
2005-11-03 06:22:40 +00:00
taca
b9d791c80d Bump PKGREVISION of packages including ruby extention library
by  Ruby 1.8.3 updates.
2005-11-02 09:48:33 +00:00
taca
8f6894d561 Disable packages used with ruby16-base only or bundled with
ruby18-base packages.
2005-11-02 09:20:50 +00:00
tv
87597a525b CONFIGURE_HAS_MANDIR=no 2005-11-01 19:38:43 +00:00
minskim
9af1fb4b74 Update mathomatic to 12.5.0.
Changes:
- Made library work with constant strings passed as input to matho_process().
- Added "set bold_colors" option.  Use this if equations are difficult to read.
- Removed "doc/ctips.html".
- Cleaned up and improved makefiles.
- Fixed bug in "compile.secure".
2005-10-29 01:45:35 +00:00
dmcmahill
ca8dec3a0b point to octave, not octave-current 2005-10-27 12:15:31 +00:00
dmcmahill
7cc49194f7 add buildlink3 file in anticipation of some new packages which will need it 2005-10-26 13:16:55 +00:00
dmcmahill
fd788df66a - update some buildlink variables which were missed during the last
scilab update.  Add a note in the Makefile to prevent this in the
  future.

- add Version.incl to the buildlink files.  That is needed to allow
  add ons to determine the scilab version.  Currently no pkgs are using
  this, but that will change soon.
2005-10-26 04:09:37 +00:00
drochner
e37818d7c2 update to 1.0.59
changes:
-java support
-MacOS X support
2005-10-25 17:55:56 +00:00
drochner
d407f9bd85 remove sitecustomize - this doesn't belong here
should fix bulk-build error
2005-10-25 11:18:52 +00:00
rillig
2e0f6a0a18 Use "+=" instead of "=" with PLIST_SUBST. 2005-10-23 22:27:07 +00:00
wiz
18b8705f23 Add patch from Richard Earnshaw in PR 31825:
gnucash uses libguppi do do various graphical rendering activities.
        A bug in the libraries bar-charting code means that the labels
        on bar-charts are attached to the wrong objects, so attempting
        to open a sub-chart results in the wrong entry being selected
        (click on the first entry and the last one is displayed, click on
        the last and the first).

        Unfortunately, it would appear that guppi is no-longer being actively
        maintained, so there might not be a further release of this library.
        The attached patch is included in several source RPMS for Linux
        (and apparently was committed to the guppi source CVS).

Bump PKGREVISION.
2005-10-22 13:25:18 +00:00
drochner
cffc26e315 update to 0.4.6
changes: many bugfixes, some improvements in mapping R-Python objects
2005-10-21 18:41:14 +00:00
drochner
32e407bce8 update to 1.3.3
changes:
-many bugfixes
-code cleanup, speedup
2005-10-21 14:57:02 +00:00
wiz
999e10b7f5 Add RMD160 checksum. 2005-10-20 18:10:26 +00:00
drochner
aae5f7c3e5 update to 0.8.2.1: fixes ugly cropping in result display 2005-10-20 17:22:32 +00:00
jmmv
af2a811058 Update to 5.6.31:
Overview of changes in gcalctool 5.6.31

* Generated release for GNOME 2.12.0 (Final)

----

Overview of changes in gcalctool 5.6.30

* Fixed bug #314540. The libparser.a library needs ranlib run on it
  for Mac OS X.

----

Overview of changes in gcalctool 5.6.29

* Fixed bug #314375. Replaced usage of malloc.h with stdlib.h in
  syntax_translation.c

----

Overview of changes in gcalctool 5.6.28

* Generated release for GNOME 2.12 (RC)

* Changed type of argument in paren_disp from char to int for 64bit.

----

Overview of changes in gcalctool 5.6.27

* Fixed bug #313255. The definitions for BUT_<n>_BAS in gtk.c were incorrect.

----

Overview of changes in gcalctool 5.6.26

* Generated release for GNOME 2.11.91 (beta2).

----

Overview of changes in gcalctool 5.6.25

* Fixed bug #311306. If the user was in View->Scientific with base Bin,
  Oct or Hex and then went to View->Basic, then returned to View->Scientific,
  some of the numeric keys were incorrectly greyed out.

----

Overview of changes in gcalctool 5.6.24

* Fixed bug #310849. Gcalctool no longer crashes when pressing the "B"
  button (or typing Shift-B).

----

Overview of changes in gcalctool 5.6.23

* Fixed bug #310791. Memory register window view logic was screwed.

----

Overview of changes in gcalctool 5.6.22

* Fixed bug #310441. Adjusted code to compile with gcc 2.95.2.

----

Overview of changes in gcalctool 5.6.21

* Fixed bug #153854. When the user changes modes, a warning dialog is
  displayed to let them know that their current display will be cleared
  and the base reset to decimal. The user has the option of checking a
  toggle box on the dialog, that will prevent this warning from being
  displayed again.

----

Overview of changes in gcalctool 5.6.20

* Fixed bug #309294. Adjustments to allow gcalctool to successfully build
  on Solaris with pkgconfig >= 0.17.1.

----

Overview of changes in gcalctool 5.6.19

* Fixed bug #309182. In non-arithmetic precdence mode, gcalctool can now
  correctly change the sign of the exponent on scientific numbers again.
----

Overview of changes in gcalctool 5.6.18

* Fixed bug #308408. gcalctool can now correctly convert the hexadecimal
  numbers "A-F" to other bases in "use arithmetic operator precedence mode".

----

Overview of changes in gcalctool 5.6.17

* Fixed bug #305619. Calculations with stored register values in arithmetic
  operator precedence mode, now work correctly.

----

Overview of changes in gcalctool 5.6.16

* Fixed bug #305034. In "Use Arithmetic Precedence" mode, when switching
  the format (e.g. from ENG to FIX), the displayed value switches to zero
  (in the corresponding format, so e.g. 0.0 or 0e+0, ...).

----

Overview of changes in gcalctool 5.6.15

* Fixed bug #305467. gcalctool no longer crashes under the following
  scenerio:
    - type "f" to bring up the user function menu.
    - dismiss the menu by clicking elsewhere with the mouse.
    - type another character which isn't in the range "0" to "9".

----

Overview of changes in gcalctool 5.6.14

* Did a gcalctool tarball release.

----

Overview of changes in gcalctool 5.6.13

* Fixed bug #304056. Adjusted the keyboard shortcuts for the Xor and x^y
  operations. New values are:
      Xor - 'x'
      x^y - '^'

----

Overview of changes in gcalctool 5.6.12

* Fixed bug #302555. Various gcalctool variables have now been const'ified.

----

Overview of changes in gcalctool 5.6.11

* Fixed bug #300957. Replaced the underscore character in
  "translator_credits" with a hyphen, to prevent some
  translation tools from being confused.

----

Overview of changes in gcalctool 5.6.10

* More work on bug #172704.
  - Adjusted the code to not try to display a menu when the user
    entered a left parentheses (another do_pending() type of operation).
  - Toggling the "Show Trailing Zeroes" operation via keyboard
    shortcuts, needed to clear the v-.pending flag.

----

Overview of changes in gcalctool 5.6.9

* Fixed up some problems reported by lint.

----

Overview of changes in gcalctool 5.6.8

* Fixed bugs #172704 and #172869. When the user now uses the keyboard shortcut
  for any of the gcalctool buttons that have a menu associated with them, that
  menu is now displayed. The user can use the arrow keys to select a menu item
  or the menu items shortcut.

----

Overview of changes in gcalctool 5.6.7

* Fixed bug #171393. Allow stock labels to show through.

----

Overview of changes in gcalctool 5.6.6

* Refixed bug #158280. The Help->Contents menu item no longer appears if
  gcalctool is built Gtk-only.

----

Overview of changes in gcalctool 5.6.5

* Fixed bug #172798. gtk_set_locale was already being run by gtk_init()
  and the gtk about popup didn't have the gcalctool icon.

----

Overview of changes in gcalctool 5.6.4

* Fixed Sun internal CR #6214176. If gcalctool is being driven by gok,
  the on-screen keyboard assistive technology, it's possible that the
  event returned by gtk_get_current_event() is NULL. If this is the
  case, we need to fudge the popping up on the menu associated with
  this menu button.

----

Overview of changes in gcalctool 5.6.3

* Fixed bug #158280. You can now build gcalctool without the GNOME
  libraries by specifying "--disable-gnome" on the configure command
  line.

----

Overview of changes in gcalctool 5.6.2

* Fixed bug #167479. gcalctool with set the View->Memory Registers menu
  item inactive if the calculator is in Basic mode.

----

Overview of changes in gcalctool 5.6.1

* Fixed bug #168694. gcalctool now saves/restores the ten memory
  register values as gconf resources.

* Removed the redundant process_str() routine in graphics.c

----

Overview of changes in gcalctool 5.6.0

* Fixed bug #169196. gcalctool now uses use g_get_home_dir().

* Added in a better implementation of the trig_filter() routine in
  functions.c
2005-10-16 12:11:19 +00:00
seb
b934749ac0 Add & enable p5-Math-GMP 2005-10-13 10:57:04 +00:00
seb
7f1811ba73 Initial import of p5-Math-GMP-2.04 as version 2.04 into the NetBSD Packages
Collection.

The Perl 5 module Math::GMP gives you access to the fast GMP library
for fast big integer math.
2005-10-13 10:54:30 +00:00