Commit graph

3212 commits

Author SHA1 Message Date
taca
634e482e57 Add patches to fix build problem with gsl-1.16. 2013-08-04 16:42:11 +00:00
obache
62175c290c Update ruby-spreadsheet to 0.8.8.
=== 0.8.8 / 02.08.2013

Author: Nathan Colgate <nathancolgate@gmail.com>
Date:   Thu Aug 1 15:01:57 2013 -0500

* Update excel/internals.rb to reference a valid Encoding type
* Encoding.find("MACINTOSH") was throwing an error. Encoding.find("MACROMAN") does not.

=== 0.8.7 / 24.07.2013

Author: Yasuhiro Asaka <yasaka@ywesee.com>
Date:   Wed Jul 24 11:31:12 2013 +0900

* Remove warnings for test suite
* warning: mismatched indentations at 'end' with 'class' at xxx
* warning: method redefined; discarding old xxx
* warning: assigned but unused variable xxx
* warning: previous definition of xxx was here
* The source :rubygems is deprecated because HTTP
* requests are insecure. (Gemfile)
2013-08-04 11:38:31 +00:00
riastradh
be260bd5dd glpk support in math/octave is hosed upstream, so disable by default. 2013-08-01 18:44:06 +00:00
adam
b3e5e19a1e GLPK 4.52.1 (release date: Jul 28, 2013)
This is a bug-fix release.

        A version information bug in Makefile.am was fixed. Thanks to
        Sebastien Villemot <sebastien@debian.org> for bug report.

GLPK 4.52 (release date: Jul 18, 2013)

        The clique cut generator was essentially reimplemented, and now
        it is able to process very large and/or dense conflict graphs.

        A simple rounding heuristic was added to the MIP optimizer.

        Some bugs were fixed in the proximity search heuristic routine.
        Thanks to Giorgio Sartor <0gioker0@gmail.com>.

        New command-line option '--proxy [nnn]' was added to glpsol to
        enable using the proximity search heuristic.

        A bug (incorrect processing of LI column indicator) was fixed
        in the mps format reading routine. Thanks to Charles Brixko for
        bug report.
2013-07-31 07:02:35 +00:00
drochner
3fe703ba08 update to 1.0.17
changes:
-Plotting uses cairo (and is antialised) by using updated GtkExtra
-Improvements to line plots including autoscaling the y axis by default
-PDF export
-Lots of of fixes and other minor improvements all over
2013-07-24 11:15:55 +00:00
wiz
38b0b45d2a Update to 1.16:
* What is new in gsl-1.16:

** fixed error in gsl_rng_fwrite where uninitialized padding
   bytes were being written (bug #39104)

** fixed error in gsl_block_alloc where padding bytes were not
   properly initialized (bugs #39101,#39102,#39103)

** fixed error in ntuple/test.c where padding bytes were not
   properly initialized (bug #39105)

** fixed triangle selection bug in gsl_sf_coupling_6j_e and
   gsl_sf_coupling_9j_e (bugs #39466 and #29606) (Håkan Johansson and
   Alexey Illarionov)

** added higher level wrapper routine gsl_multifit_fdfsolver_driver

** converted gsl_multifit_linear_residuals to use dgemv to improve
   efficiency (bug #39153)

** added functions gsl_stats_spearman and gsl_sort_vector2 to compute
   Spearman rank correlation

** added function gsl_poly_dd_hermite_init for Hermite interpolation

** Added support for robust linear least squares

** Added function gsl_linalg_SV_leverage for computing statistical
   leverages from SVD decomposition

** Added support for approximating the Jacobian of nonlinear least
   squares fits using forward finite differences

** Extended gsl_sf_coupling_3j to allow larger range and to handle
   the special case (ja jb jc; 0 0 0)=0 when ja+jb+jc is odd

** Fixed gsl_sf_mathieu_se_array to return zero when the order is zero
   [bug #33679].

** Fixed overflow in gsl_sf_lncosh for large negative x (x<-354).

** Improved gsl_ran_negative_binomial_pdf to avoid underflow/overflow
   for large arguments.

** Multisets now allow k strictly greater than n.

** Fixed gsl_matrix_complex_fwrite/fread failure for noncontiguous
   matrices (Matthias Sitte).
2013-07-21 20:11:11 +00:00
wiz
f812c78a27 Update to 1.12.4:
Gnumeric 1.12.4

Andreas:
	* Improve xlsx export of Gnumeric functions.
	* Improve xlsx import of Excel 2010 functions.
	* Improve xls import of Excel 2010 functions.
	* Fix documentation of r.q* and r.*nbinom. [#703164]
	* Add Excel 2010's BETA.DIST.
	* Fix crash on corrupted files. [#703149] [#703215] [#703625] [#703895]
	* Fix import of sxc files. [#703249]
	* Fix TDIST Import/Export from/to ODF.
	* Write manual legend position to ODF. [#703362]
	* Fix position handling in strict ODF export.

Jean:
	* Don't attempt to add a path item when there is no path object. [#703052]

Morten:
	* Improve accuracy for 2-argument ERF.
	* Fix crashes on corrupted files.  [#703143] [#703307] [#703306]
	* Fix --with-long-double tests.  [#703397]
	* Fix problems saving auto filters to xls.  [#703308]
	* Improve handling of large graph ranges.  [#703546]
	* Fix analysis issue with translations.  [#703355]
	* Fix COUNTIF (etc) pattern matching.  [#703770]
2013-07-20 15:49:51 +00:00
joerg
178d9dd159 Fix friend definition. 2013-07-19 12:53:09 +00:00
joerg
45f29ced64 Not MAKE_JOBS_SAFE. 2013-07-19 12:52:10 +00:00
joerg
4c8518dd65 Add termios.h formerly included by unistd.h. 2013-07-18 12:07:24 +00:00
ryoon
f8e628f818 * .include "../../devel/readline/buildlink3.mk" with USE_GNU_READLINE=yes
are replaced with .include "../../devel/readline/buildlink3.mk", and
  USE_GNU_READLINE are removed,

* .include "../../devel/readline/buildlink3.mk" without USE_GNU_READLINE
  are replaced with .include "../../mk/readline.buildlink3.mk".
2013-07-15 02:02:17 +00:00
wen
3060b29b0f Update to 0.29
Add missing DEPENDS

Upstream changes:
0.29 30 May 2013

    - Fix a signed vs. unsigned char issue in ranged moebius.  Thanks to the
      Debian testers for finding this.

    - XS is_prob_prime / is_prime now use a BPSW-style test (SPRP2 plus
      extra strong Lucas test) for values over 2^32.  This results in up
      to 2.5x faster performance for large 64-bit values on most machines.
      All PSP2s have been verified with Jan Feitsma's database.

    - forprimes now uses a segmented sieve.  This (1) allows arbitrary 64-bit
      ranges with good memory use, and (2) allows nesting on threaded perls.

    - prime_count_approx for very large values (> 10^36) was very slow without
      Math::MPFR.  Switch to Li+correction for large values if Math::MPFR is
      not available.

    - Workaround for MSVC compiler.

    - Added:
        is_pseudoprime (Fermat probable prime test)
        is_lucas_pseudoprime (standard Lucas-Selfridge test)
        is_extra_strong_lucas_pseudoprime (Mo/Jones/Grantham E.S. Lucas test)

0.28 23 May 2013

    - An optimization to nth_prime caused occasional threaded Win32 faults.
      Adjust so this is avoided.

    - Yet another XS micro-speedup (PERL_NO_GET_CONTEXT)

    - forprimes { block } [begin,]end.  e.g.
        forprimes { say } 100;
        $sum = 0;  forprimes { $sum += $_ } 1000,50000;  say $sum;
        forprimes { say if is_prime($_+2) } 10000;  # print twin primes

    - my $it = prime_iterator(10000); say $it->();
      This is experimental (that is, the interface may change).

0.27 20 May 2013

    - is_prime, is_prob_prime, next_prime, and prev_prime now all go straight
      to XS if possible.  This makes them much faster for small inputs without
      having to use the -nobigint flag.

    - XS simple number validation to lower function call overhead.  Still a
      lot more overhead compared to directly calling the XS functions, but
      it shaves a little bit of time off every call.

    - Speedup pure Perl factoring of small numbers.

    - is_prob_prime / is_prime about 10% faster for composites.

    - Allow '+N' as the second parameter to primes.pl.  This allows:
          primes.pl 100 +30
      to return the primes between 100 and 130.  Or:
          primes.pl 'nth_prime(1000000000)' +2**8

    - Use EXTENDED_TESTING to turn on extra tests.

0.26 21 April 2013

    - Pure Perl factoring:
        - real p-1 -- much faster and more effective
        - Fermat (no better than HOLF)
        - speedup for pbrent
        - simple ECM
        - redo factoring mix

    - New functions:
        prime_certificate  produces a certificate of primality.
        verify_prime       checks a primality certificate.

    - Pure perl primality proof now uses BLS75 instead of Lucas, so some
      numbers will be much faster [n-1 only needs factoring to (n/2)^1/3].

    - Math::Prime::Util::ECAffinePoint and ECProjectivePoint modules for
      dealing with elliptic curves.

0.25 19 March 2013

    - Speed up p-1 stage 2 factoring.  Combined with some minor changes to the
      general factoring combination, ~20% faster for 19 digit semiprimes.

    - New internal macro to loop over primary sieve starting at 2.  Simplifies
      code in quite a few places.

    - Forgot to skip one of the tests with broken 5.6.2.

0.24 10 March 2013

    - Fix compilation with old pre-C99 strict compilers (decl after statement).

    - euler_phi on a range wasn't working right with some ranges.

    - More XS prime count improvements to speed and space.  Add some tables
      to the sieve count so it runs a bit faster.  Transition from sieve later.

    - PP prime count for 10^9 and larger is ~2x faster and uses much less
      memory.  Similar impact for nth_prime 10^8 or larger.

    - Let factor.pl accept expressions just like primes.pl.

0.23  5 March 2013

    - Replace XS Zeta for x > 5 with series from Cephes.  It is 1 eps more
      accurate for a small fraction of inputs.  More importantly, it is much
      faster in range 5 < x < 10.  This only affects non-integer inputs.

    - PP Zeta code replaced (for no-MPFR, non-bignums) with new series.  The
      new code is much more accurate for small values, and *much* faster.

    - Add consecutive_integer_lcm function, just like MPU::GMP's (though we
      define ci_lcm(0) = 0, which should get propogated).

    - Implement binary search on RiemannR for XS nth_prime when n > 2e11.
      Runs ~2x faster for 1e12, 3x faster for 1e13.  Thanks to Programming
      Praxis for the idea and motivation.

    - Add the first and second Chebyshev functions (theta and psi).

    - put isqrt(n) in util.h, use it everywhere.
      put icbrt(n) in lehmer.h, use it there.

    - Start on Lagarias-Miller-Odlyzko prime count.

    - A new data structure for the phi(x,a) function used by all the fast
      prime count routines.  Quite a bit faster and most importantly, uses
      half the memory of the old structure.

    - Performance:
       - Divisor sum with no sub is ~10x faster.
       - Speed up PP version of exp_mangoldt, create XS version.
       - Zeta much faster as mentioned above.
       - faster nth_prime as mentioned above.
       - AKS about 10% faster.
       - Unroll a little more in sieve inner loop.  A couple percent faster.
       - Faster prime_count and nth_prime due to new phi(x,a) (about 1.25x).

0.22 26 February 2013

    - Move main factor loop out of xs and into factor.c.

    - Totient and Moebius now have complete XS implementations.

    - Ranged totient uses less memory when segmented.

    - Switch thread locking to pthreads condition variables.

0.21 22 February 2013

    - Switch to using Bytes::Random::Secure for random primes.  This is a
      big change in that it is the first non-CORE module used.  However, it
      gets rid of lots of possible stupidness from system rand.

    - Spelling fixes in documentation.

    - primes.pl: Add circular and Panaitopol primes.

    - euler_phi and moebius now will compute over a range.

    - Add mertens function: 1000+ times faster than summing moebius($_).

    - Add exp_mangoldt function: exponential of von Mangoldt's function.

    - divisor_sum defaults to sigma if no sub is given (i.e. it sums).

    - Performance:
       - Speedup factoring small numbers.  With -nobigint factoring from
         1 to 10M, it's 1.2x faster.  1.5x faster than Math::Factor::XS.
       - Totient and M枚bius over a range are much faster than separate calls.
       - divisor_sum is 2x faster.
       - primes.pl is much faster with Pillai primes.
       - Reduce overhead in euler_phi -- about 2x faster for individual calls.

0.20  3 February 2013

    - Speedup for PP AKS, and turn off test on 32-bit machines.

    - Replaced fast sqrt detection in PP.pm with a slightly slower version.
      The bloom filter doesn't work right in 32-bit Perl.  Having a non-working
      detector led to really bad performance.  Hence this and the AKS change
      should speed up testing on some 32-bit machines by a huge amount.

    - Fix is_perfect_power in XS AKS.

0.19  1 February 2013

    - Update MR bases with newest from http://miller-rabin.appspot.com/.

    - Fixed some issues when using bignum and Calc BigInt backend, and bignum
      and Perl 5.6.

    - Added tests for bigint is_provable_prime.

    - Added a few tests to give better coverage.

    - Adjust some validation subroutines to cut down on overhead.

0.18  14 January 2013

    - Add random_strong_prime.

    - Fix builds with Solaris 9 and older.

    - Add some debug info to perhaps find out why old ActiveState Perls are
      dying in Math::BigInt::Calc, as if they were using really old versions
      that run out of memory trying to calculate '2 ** 66'.
      http://code.activestate.com/ppm/Math-Prime-Util/

0.17  20 December 2012

    - Perl 5.8.1 - 5.8.7 miscalculates 12345 ** 4, which I used in a test.

    - Fix (hopefully) for MSC compilation.

    - Unroll sieve loop for another 20% or so speedup.  It won't have much
      practical application now that we use Lehmer's method for counts, but
      there are some cases that can still show speedups.

    - Changed the rand functionality yet again.  Sorry.  This should give
      better support for plugging in crypto RNG's when used from other
      modules.

0.16  11 December 2012

    - randbits >= 32 on some 32-bit systems was messing us up.  Restrict our
      internal randbits to wordsize-1.
2013-07-14 06:11:50 +00:00
obache
7c637a123a Update ruby-spreadsheet to 0.8.6.
=== 0.8.6 / 11.07.2013

Author: Arjun Anand and Robert Stern <dev+arjuna+rstern@reenhanced.com>
Date:   Wed Jul 10 13:45:30 2013 -0400

* Allow editing of an existing worksheet.
2013-07-13 12:03:33 +00:00
tsutsui
e260f23246 Disable fftw-fortran option by default until lang/g95 issue is resolved.
Also bump PKGREVISION for the option default change.

"Please do that" from wiz@ in PR/48023.
2013-07-09 15:46:45 +00:00
jperkin
0e6def7961 Split the extract phase into fetch and extract, to ensure that distfiles
can be fetched correctly, keeping in sync with devel/gmp inplace.mk
2013-07-08 20:18:52 +00:00
taca
2caaddd34e Change GEM_CLEANBUILD not to include working file to package.
Bump PKGREVISION.
2013-07-07 15:29:47 +00:00
wen
088b2522b7 Update to 3.98.1.1
Upstream changes:
Version 3.98-1

  *      Compilation error with clang. Simple declaration of a routine.

Version 3.98-0

  *      Update for libxml2-2.9.1 and reading from a connection for xmlEventParse().

  *      xmlIncludes() is a hierarchical version of getXIncludes()

  *      Modifications to xmlSource(), e.g. verbose = TRUE as default.

Version 3.97-0

  *      Fix for xmlValue(node) = text.  Identified by Lawrence Edwards.
         Uses xmlNodeSetContent() now and leaves freeing the original content to that routine.

  *      Updates for xmlSource()

Version 3.96-1

  *     readHTMLTable() ignores headers that are over 999 characters.

  *     Fix a problem in readHTMLTable() with some table headers not having
        the correct number of elements to match the columns.

Version 3.96-0

  *     Introduced readHTMLList(), getHTMLLinks(), getHTMLExternalFiles(), getXIncludes().

  *     When serializing XMLNode objects, i.e. R representations of nodes, ensure " and <, etc. in attributes
        are serialized correctly.


Version 3.95-1

  *     Allow htmlParse(), xmlParse(), etc. ?

Version 3.95-0

  *     Moved development version of the source code for the package to github -
        https://github.com/omegahat/XML.git

  *     Changes to the structure of the package to allow installation directly rather than
        via a one-step staging into the R package structure.

  *     Sample XML documents moved from data/ to exampleData, and examples updated.

  *     getDefaultNamespace() and matchNamespaces() use simplify = TRUE to call
        xmlNamespaceDefinitions() to get the namespaces as a character vector rather than
        list.

  *     Documentation updates


Version 3.94-0

  *     getNodeLocation() now reports the actual line number for text nodes rather than 0,
        using the sibling nodes' or parent node's line number.

  *     xpathApply() and related functions work with builtin type "functions",
        e.g. class.

  *     xpathApply() and related functions (getNodeSet, xpathSApply) allow
        the caller to specify multiple queries as a character vector
        and these are pasted together as compound location paths by
        separating them with a '|'.  This makes it easier for the
        caller to manage the different queries.

  *     assigning to a child of a node works, e.g. node[["abc"]] = text/node
        and node[[index]] = text/node.  We replace a matching name.  If the
        replacement value is text, we use the name to

  *     getChildrenStrings() is a function that implements the equivalent of
        xmlApply(node, xmlValue) but faster because we avoid the function call
        for each element.

  *     options parameter for xmlParse() and htmlParse() for controlling the parser.
        (Currently only used when encoding is explicitly specified.)

  *     encoding parameter for xmlParse() and xmlTreeParse() now works for XML documents,
        not just HTML documents.

  *     Update for readHTMLTable() method so that we look at just the final <tr> node
        in a <thead>.

Version 3.93-1

  *     Fixed bug in findXInclude() that sometimes got the wrong XMLXIncludeStartNode.
        Hence getNodeLocation() might report the wrong file, but correct line number!

  *     findXInclude() now has a recursive parameter that resolves the chain of XIncludes.
        This returns the full path to the file, relative to the base/top-level document,
        not just the parent document.

  *     Change to the default value of the error parameter in htmlParse() and htmlTreeParse()
        which will generate a structured R error if there is an IO error.
        The set of issues that will raise an error will be broadened in the future.

Version 3.93-0

  *    Enabled the fixing of <dummy> namespaces by finding the definition o
       for that prefix in the ancestor nodes.

Version 3.92-2

  *    Synchronized compilation flags for Windows with those on OSX & Linux.

Version 3.92-1

  *    Restore original error handler function for htmlParse() and htmlTreeParse()

  *    Fixed a reference counting problem caused by not adding a finalizer in the
       as() method for coercing an XMLInternalNode to an XMLInternalDocument.
       Example from Janko Thyson.

  *    Fixed up some partial argument names found by R CMD check!


Version 3.92-0

  *    Added --enable-xml-debug option for the configure script and this activates
       the debugging diagnostic reporting, mainly for the garbage collection and node
       reference counts.

  *    Work-around for HTML documents not being freed (but XML documents are!)

  *    Added an isHTML parameter for xmlTreeParse.

  *    Merge htmlTreeParse/htmlParse with xmlTreeParse.

  *    Implemented some diagnostic facilities to determine if an external pointer
       is in R's weak references list.   This needs support within R. (Ask for code if
       you want.)

Version 3.91-0

  *    Start of implementation to allow nested calls to newXMLNode() to use namespace prefixes
       defined in ancestor nodes.  Disabled at present.
2013-07-07 14:21:58 +00:00
wen
6523d6e2f1 Update to 1.0.25
Update LICENSE

Upstream changes:
2013-02-28  Albrecht Gebhardt  <agebhard@uni-klu.ac.at>

	* DESCRIPTION, LICENSE: final version of license desription done.
2013-07-07 12:10:58 +00:00
wen
fbc9d7c5c1 Update to 0.7
(No upstream changelog)
2013-07-07 12:02:36 +00:00
wen
f8cbb84989 Update to 1.0.5
(No upstream changelog)
2013-07-07 11:52:41 +00:00
wen
197e1ea883 Update to 0.14.0
(No upstream changelog)
2013-07-07 11:32:24 +00:00
wen
4862ec89a4 Update to 2.01.33
Upstream changes:
2013-06-22 17:09  rsbivand

	* DESCRIPTION, inst/LICENCE, inst/README, man/burkitt.Rd: help line
	  lengths

2013-03-30 13:30  rsbivand

	* LICENCE: remove clang warning

2013-03-30 13:29  rsbivand

	* src/ptinpoly.c: remove clang warning

2013-01-16 08:35  rsbivand

	* ChangeLog, inst/ChangeLog: tidy

2013-01-16 08:34  rsbivand

	* DESCRIPTION, R/First.lib.S: change to .onAttach for startup
	  message
2013-07-07 11:20:24 +00:00
wen
fd343d9191 Update to 1.0.11
Upstream changes:
2013-06-28 09:04  edzer

	* man/Spatial-class.Rd, man/disaggregate.Rd: added documentation
	  for disaggregate and aliases for spatstat S4 classes

2013-06-28 05:46  edzer

	* NAMESPACE: export method disaggregate

2013-06-27 20:51  edzer

	* NAMESPACE: exporting spatstat Classes ppp, im, psp, owin

2013-06-27 20:45  edzer

	* R/sp_spat1.R: removed class tess (which is used, nor exported)

2013-06-27 06:54  edzer

	* R/spdists.R, R/zerodist.R, man/zerodist.Rd, src/init.c, src/sp.h,
	  src/zerodist.c: zerodist and zerodist2 now handle longlat data,
	  using sp_gcdist
	  tidied spdists.R

2013-06-25 19:08  edzer

	* R/SpatialLines-methods.R, R/spdists.R,
	  man/SpatialGridDataFrame-class.Rd, man/SpatialPoints-class.Rd,
	  man/SpatialPointsDataFrame-class.Rd, man/spDistsN1.Rd,
	  src/gcdist.c, src/sp.h, tests/Examples/sp-Ex.Rout.save: tidy;
	  added $ method for SpatialPoints, such that meuse$x is found even
	  if x is a coordinate.
	  added methods to convert from spatstat (im, ppp) to Spatial
	  objects

2013-06-25 17:13  rsbivand

	* inst/doc/csdacm.Rnw, inst/doc/csdacm.pdf: adding footnote

2013-06-25 14:09  rsbivand

	* DESCRIPTION: add vignette; fix line length issues

2013-06-25 14:03  rsbivand

	* DESCRIPTION, inst/doc/csdacm.Rnw, inst/doc/csdacm.pdf,
	  inst/doc/intro_sp.pdf, inst/doc/over.pdf,
	  inst/external/seamap105_mod.csv, man/CRS-class.Rd,
	  man/SpatialPolygons-class.Rd,
	  man/SpatialPolygonsDataFrame-class.Rd,
	  man/as.SpatialPolygons.GridTopology.Rd, man/gridlines.Rd,
	  man/nowrapSpatialLines.Rd, man/polygons.Rd,
	  man/recenter-methods.Rd, man/spplot.Rd,
	  tests/Examples/sp-Ex.Rout.save: add vignette; fix line length
	  issues

2013-06-24 21:09  edzer

	* R/SpatialPoints-methods.R, R/disaggregate.R, R/sp_spat1.R,
	  R/unfold.R: added disaggregate functions (not yet exported);
	  added $ method for SpatialPoints that also catches coordinates,
	  as meuse$x
	  sp_spat1 has the conversion from spatstat classes ppp and im to
	  Spatial objects

2013-06-21 14:11  rsbivand

	* R/CRS-methods.R, man/CRS-class.Rd, man/is.projected.Rd,
	  tests/fail1.R, tests/fail1.Rout.save: checks on latlon and lonlat

2013-05-23 19:29  edzer

	* R/Spatial-methods.R, man/spTransform.Rd: added spTransform(ANY)
	  methods that will stop and point to rgdal.

2013-05-07 09:12  rsbivand

	* R/SpatialPoints-methods.R: guard against non-finite coordinates

2013-05-07 07:54  rsbivand

	* inst/include/sp_xports.c, src/sp_xports.c: guard against
	  non-finite polygon coordinates

2013-04-26 08:54  edzer

	* DESCRIPTION, R/SpatialGridDataFrame-methods.R, R/unfold.R:
	  scaffold for unfold - nothing exported; improved coercion
	  function
	  for SpatialPixelsDataFrame to SpatialGridDataFrame, thanks to Jon
	  Skoien.

2013-04-24 07:05  rsbivand

	* ChangeLog, inst/ChangeLog: closeAllConnections in readRAST6
	  replaced by counted closure

2013-04-22 19:48  edzer

	* DESCRIPTION: version update

2013-04-22 14:49  edzer

	* demo/depend.R: tidy

2013-04-22 14:24  edzer

	* demo/depend.R: better depend script

2013-04-22 09:34  edzer

	* demo/depend.R, man/spTransform.Rd,
	  tests/Examples/sp-Ex.Rout.save, tests/fail1.Rout.save: added
	  spTransform doc, updated checks, depend now uses two cores.

2013-04-19 15:52  edzer

	* DESCRIPTION: increased the rgdal version dependency

2013-04-19 13:16  edzer

	* NAMESPACE, R/Spatial-methods.R: defines generic, and exports
	  method spTransform.

2013-04-12 22:11  mdsumner

	* R/gridlines.R: stringsAsFactors = FALSE for gridat labels,
	  otherwise the factors returned are unusable without conversion to
	  character

2013-03-30 13:36  edzer

	* DESCRIPTION: version bump

2013-03-30 13:33  edzer

	* R/spplot.R: lwd and lty now work on spplot()'ing
	  SpatialPolygonsDataFrame objects;
	  email today on r-sig-geo.

2013-03-29 10:00  rsbivand

	* ChangeLog, inst/ChangeLog: tidy

2013-03-29 09:57  rsbivand

	* inst/include/sp_xports.c: removing clang warnings

2013-03-29 09:56  rsbivand

	* DESCRIPTION, src/Rcentroid.c, src/pip.c, src/pip2.c,
	  src/sp_xports.c, src/zerodist.c: removing clang warnings
2013-07-07 11:16:24 +00:00
wen
dbd9dc2860 Update to 1.4.17
(No upstream changelog)
2013-07-07 11:07:18 +00:00
wen
6facd1be9d Update to 0.9.5
(No changelog upstream)
2013-07-07 09:30:28 +00:00
wen
6c9611cbc3 Update to 1.7.10
Upstream changes:
Changes in Version 1.7-10

  o All methods that had previously been fully exported (merge.zoo,
    MATCH.default, ..., and many more) in order to be accessible to
    _all_ conceivable generics are now additionally registered as
    S3method()s for the standard generics. Exception: as.Date.* are
    still only fully exported.

  o Added a new mean() method for "zoo" objects that simply does
    mean(coredata(obj), ...).

  o Added yearmon_trans, scale_x_yearmon and scale_y_yearmon and
    yearqtr_trans, scale_x_yearqtr and scale_y_yearqtr to ggplot2 interface.

  o Removed the use of the shape and linetype aesthetic by default
    in autoplot() method.

  o Bug fix in na.fill for univariate series based on 1-column matrices
    (provided by Josh Ulrich).

  o Added [[ methods for "yearmon" and "yearqtr".

  o Constructs like time(obj)[ORDER(time(obj))] are now split up into
    two steps in the package code. If zoo is only imported but not
    loaded, R can otherwise have problems correctly dispatching to
    the new generics ORDER and MATCH.

  o as.Date() now also works for yearqtr/yearmon that are all NA
    (especially needed for format() and print() method).
2013-07-07 09:23:30 +00:00
rodent
ebafde0608 +p5-Math-Complex 2013-07-06 00:36:53 +00:00
rodent
1970c37b08 Import p5-Math-Complex-1.59 as math/p5-Math-Complex.
This package lets you create and manipulate complex numbers. By default, Perl
limits itself to real numbers, but an extra use statement brings full complex
support, along with a full set of mathematical functions typically associated
with and/or extended to complex numbers.
2013-07-06 00:35:15 +00:00
ryoon
2193923ba6 Recursive revbump from graphics/giflib update to 5.0.4. 2013-07-05 13:29:28 +00:00
wiz
9e4b20860c Update to 1.12.3:
Gnumeric 1.12.3

Andreas:
	* Fix border handling for merged cells in LaTeX export.
	* Fix 'Go to First'. [#699631]
	* Fix data merges. [#699897]
	* Fix editing of hyperlinks. [#700732]
	* Fix conditional formatting crash. [#700969]
	* Do not include hidden cells in automatic print range. [#700994]
	* Make buttons 1 and 2 behave similarly when selecting cells. [#700792]
	* Warn when encountering extLst in xlsx import. [#700018]
	* Use ctrl-a only to select the whole sheet, if the sheet
	  has focus. [#699746]
	* Add a keyboard shortcut to jump to the current cell indicator.
	  [#699710]
	* Fix placement of hyperlink tooltip. [#701436]
	* Adjust cell comment display. [#698519]
	* Make reference display in paste/define names dialog consistent with
	  sheet preferences. [Debian #699054]
	* Write/read pagesetup settings to/from xlsx. [#701834]
	* Fix in-cell-combos attached to merged cells. [#702146]
	* Use the pagesetup setting to determine the landscape option in LaTeX
	  export [#702169]
	* Fix ODF crash. [#702197]
	* In ODF import ignored mentioned but not included sheets. [#698388]
	* Fix crash on corrupted files.  [#702205] [#702219] [#702285]
	  [#702288] [#702364] [#702409] [#702486] [#702485] [#702498] [#702322]
	  [#702689]
	* Some documentation improvements. [Debian #621735] [Debian #530462]
	* Fix crash on xlsx import due to external references. [#702407]
	* Fix reading of conditional formats from xls files. [#702612]
	* Fix reading of solid fill conditional formats from xlsx files.
	  [#702615]
	* Improve xlsx import of new stat function names.
	* Fix export of FLOOR(x) to xlsx. [Debian #464732]
	* Fix clipboard related crash. [#702868]

Darrell Tangman:
	* Update documentation for Edit and Insert menus. [#700596]
	* Update documentation for comments and hyperlinks. [#700797]
	* Consolidate comment, hyperlinks, names documentation.
	* Update documentation for Manage Sheets, R1C1 notation,
	  sheet ranges. 1.12 updates, typo corrections, misc. cleanup.

Dmitry Smirnov:
	* Fixes to the gnumeric and ssconvert manual pages.

Jean:
	* Adjust labels vertical alignment in document properties
	  dialog. [#700156]
	* Don't crash when exchanging missing axes. [#702126]
	* Don't accept GNM_SHEET_PATTERNS as a valid pattern. [#702833]

Morten:
	* Improve xlsx import of style-only cells.
	* Don't write empty cells to .gnumeric.
	* Add MPSEUDOINVERSE function.
	* Add ctrl-shift-z as extra accelerator for redo.  [#699579]
	* Fix conditional format problem.  [#699647]
	* Remove gobject property strings from translation corpus.
	* Improve LINEST.  [#551457]
	* Improve statfuns tests.  [#700294]
	* Improve mathfuns tests.  [#700295]
	* Add new R.PTUKEY function.  [#700132]
	* Add new Q.PTUKEY function.  [#700132]
	* Fix missing translation of certain function examples.
	* Add new SNORM.DIST.RANGE function.
	* Fix critical when last row deleted.
	* Fix criticals in about dialog.
	* Introspection fixes.
	* Fix xls/biff5 link export.  [#701604]
	* Workaround problems with automake 1.13.
	* Fix crashes on corrupted files.  [#702101] [#702182] [#702218]
	  [#702267] [#702277] [#702379] [#702658] [#703006]
	* Improve xls import of new stat function names.
	* Plug leaks.
2013-07-04 14:12:09 +00:00
sno
9bb9908664 Adding subdir's for p5-Algorithm-Cluster, p5-Math-Random-ISAAC,
p5-Math-Random-ISAAC-XS, p5-Number-Tolerant.
2013-07-03 14:36:49 +00:00
sno
9ebd34a15c Adding package for CPAN distribution Math-Random-ISAAC version 1.004 into
math/p5-Math-Random-ISAAC.

As with other Pseudo-Random Number Generator (PRNG) algorithms like the
Mersenne Twister (see Math::Random::MT), this algorithm is designed to
take some seed information and produce seemingly random results as output.

However, ISAAC (Indirection, Shift, Accumulate, Add, and Count) has
different goals than these commonly used algorithms. In particular, it's
really fast - on average, it requires only 18.75 machine cycles to generate
a 32-bit value. This makes it suitable for applications where a significant
amount of random data needs to be produced quickly, such solving using the
Monte Carlo method or for games.

The results are uniformly distributed, unbiased, and unpredictable unless
you know the seed. The algorithm was published by Bob Jenkins in the late
90s and despite the best efforts of many security researchers, no feasible
attacks have been found to date.
2013-07-03 14:33:32 +00:00
sno
f79ee669b2 Adding package forPAN package Math-Random-ISAAC-XS version 1.004 into
math/Math-Random-ISAAC-XS.

This module implements the same interface as Math::Random::ISAAC and can
be used as a drop-in replacement. This is the recommended implementation
of the module, based on Bob Jenkins' reference implementation in C.

Selecting the backend to use manually really only has two uses:

    * If you are trying to avoid the small overhead incurred with
      dispatching method calls to the appropriate backend modules.
    * If you are testing the module for performance and wish to
      explicitly decide which module you would like to use.
2013-07-03 14:30:36 +00:00
sno
fcf26a3cac Adding package for CPAN distribution Algorithm-Cluster version 1.50 into
devel/p5-Algorithm-Cluster.

This module is an interface to the C Clustering Library, a general purpose
library implementing functions for hierarchical clustering (pairwise simple,
complete, average, and centroid linkage), along with k-means and k-medians
clustering, and 2D self-organizing maps. This library was developed at the
Human Genome Center of the University of Tokyo. The C Clustering Library
is distributed along with Cluster 3.0, an enhanced version of the famous
Cluster program originally written by Michael Eisen while at Stanford
University.
2013-07-03 14:26:03 +00:00
sno
6379746940 Adding package for CPAN distribution Number-Tolerant version 1.701 into
math/p5-Number-Tolerant.

Number::Tolerant creates a number-like object whose value refers to a
range of possible values, each equally acceptable. It overloads
comparison operations to reflect this.

I use this module to simplify the comparison of measurement results to
specified tolerances.

    reject $product unless $measurement == $specification;
2013-07-03 13:58:39 +00:00
adam
3b5c72b2ce Changes 4.51:
Singleton and dense phases were implemented on computing
LU-factorization with Gaussian elimination. The singleton phase
is a feature that allows processing row and column singletons
on initial elimination steps more efficiently. The dense phase
is a feature used on final elimination steps when the active
submatrix becomes relatively dense. It significantly reduces
the time needed, especially if the active submatrix fits in CPU
cache, and improves numerical accuracy due to full pivoting.

The API routine glp_adv_basis that constructs advanced initial
LP basis was replaced by an improved version, which (unlike the
old version) takes into account numerical values of constraint
coefficients.

The proximity search heuristic for MIP was included in the GLPK
integer optimizer glp_intopt. On API level the heuristic can be
enabled by setting the parameter ps_heur in glp_iocp to GLP_ON.
This feature is also available in the solver glpsol through
command-line option '--proxy'.

A bug was fixed that caused numerical instability in the FPUMP
heuristic.
2013-07-02 10:17:37 +00:00
tsutsui
6c9d91d5ea Make fortran support an option and enable it only on supported platforms.
Fixes build failure on platforms that are not supported by g95,
including NetBSD/arm 6.1.  PR/47965

Ok'ed by wiz@.
2013-06-29 18:59:43 +00:00
joerg
a3fbeef639 Require tex magic. Bump revision. 2013-06-26 15:50:30 +00:00
joerg
cb9c22b640 There is no portable way to derive vector iterators from pointers, so
just use the pointers directly.
2013-06-13 14:28:38 +00:00
joerg
8acc42f97c Fix main prototype. 2013-06-13 14:27:50 +00:00
joerg
2b253a665a Don't put extern "C" around headers that themselve include C++ headers. 2013-06-13 14:27:21 +00:00
dholland
e4ab372b11 Needs bison, lost during update 2013-06-11 23:34:48 +00:00
ryoon
fe39499e7f Add eukleides10.
Rename xeukleides to xeukleides10.
2013-06-10 12:31:25 +00:00
ryoon
1c1b8733ee Fix DEPENDS. 2013-06-10 12:29:39 +00:00
ryoon
021762f7c1 Remove xeukleides, remaned to xeukleides10. 2013-06-10 12:28:18 +00:00
ryoon
a56faa7ef3 Import xeukleides-1.0.1nb1 as math/xeukleides10.
This is a graphical frontend for eukleides legacy version.
2013-06-10 12:27:05 +00:00
ryoon
1775763d67 Re-import eukleides-1.0.3 as math/eukleides10.
A Euclidean drawing language compiler which allows one to typeset
geometry figures within a (La)TeX document. This program is also useful
to convert such figures into EPS format or into various other vector
graphic formats.
This package is legacy version.
2013-06-10 12:25:59 +00:00
ryoon
8c643e6623 Update to 1.5.4
* Change to 1.5 branch. New implementation.
2013-06-10 12:24:29 +00:00
gdt
240be403c0 Cosmetic change to make it easier to disable fortran.
This commit makes no semantic change; it merely splits
  USE_LANGUAGES=c fortran77
into two lines, reorders, and adds comments.

However, one can then easily turn off
  USE_LANGUAGES+= fortran77
and turn on
  CONFIGURE_ARGS+= --disable-fortran
and build, without a fortran dependency, and observe that there are no
PLIST problems.
2013-06-07 13:28:56 +00:00
wiz
e0b49a2fed Bump PKGREVISION for libXft changes for NetBSD native X support on
NetBSD 6, requested by tron.
2013-06-06 12:53:40 +00:00