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251752 commits

Author SHA1 Message Date
bsiegert
54ab5b93a6 New package, go-mow-cli.
A framework to build command line applications in Go with most of the burden of
arguments parsing and validation placed on the framework instead of the
developer.
2016-07-16 13:03:42 +00:00
bsiegert
e9024c30f0 Add a buildlink3.mk for dependent packages. 2016-07-16 12:51:46 +00:00
asau
ddbfe56ad7 Revert changes inspired by broken tool. 2016-07-16 11:48:01 +00:00
wiz
1419b65006 Updated lang/guile20 to 2.0.12 2016-07-16 09:18:03 +00:00
wiz
dad142643d Updated guile20 to 2.0.12.
Changes in 2.0.12 (since 2.0.11):

* Notable changes

** FFI: Add support for functions that set 'errno'

When accessing POSIX functions from a system's libc via Guile's dynamic
FFI, you commonly want to access the 'errno' variable to be able to
produce useful diagnostic messages.

This is now possible using 'pointer->procedure' or
'scm_pointer_to_procedure_with_errno'.  See "Dynamic FFI" in the manual.

** The #!r6rs directive now influences read syntax

The #!r6rs directive now changes the per-port reader options to make
Guile's reader conform more closely to the R6RS syntax.  In particular:

  - It makes the reader case sensitive.
  - It disables the recognition of keyword syntax in conflict with the
    R6RS (and R5RS).
  - It enables the `square-brackets', `hungry-eol-escapes' and
    `r6rs-hex-escapes' reader options.

** 'read' now accepts "\(" as equivalent to "("

This is indented for use at the beginning of lines in multi-line strings
to avoid confusing Emacs' lisp modes.  Previously "\(" was an error.

** SRFI-14 character data set upgraded to Unicode 8.0.0

** SRFI-19 table of leap seconds updated

** 'string-hash', 'read-string', and 'write' have been optimized

** GOOPS bug fix for inherited accessor methods

In the port of GOOPS to Guile 2.0, we introduced a bug related to
accessor methods.  The bug resulted in GOOPS assuming that a slot S in
an object whose class is C would always be present in instances of all
subclasses C, and allocated to the same struct index.  This is not the
case for multiple inheritance.  This behavior has been fixed to be as it
was in 1.8.

One aspect of this change may cause confusion among users.  Previously
if you defined a class C:

  (use-modules (oop goops))
  (define-class C ()
    (a #:getter get-a))

And now you define a subclass, intending to provide an #:init-value for
the slot A:

  (define-class D ()
    (a #:init-value 42))

Really what you have done is define in D a new slot with the same name,
overriding the existing slot.  The problem comes in that before fixing
this bug (but not in 1.8), the getter 'get-a' would succeed for
instances of D, even though 'get-a' should only work for the slot 'a'
that is defined on class C, not any other slot that happens to have the
same name and be in a class with C as a superclass.

It would be possible to "merge" the slot definitions on C and D, but
that part of the meta-object protocol (`compute-slots' et al) is not
fully implemented.

Somewhat relatedly, GOOPS also had a fix around #:init-value on
class-allocated slots.  GOOPS was re-initializing the value of slots
with #:class or #:each-subclass allocation every time instances of that
class was allocated.  This has been fixed.

* New interfaces

** New SRFI-28 string formatting implementation

See "SRFI-28" in the manual.

** New (ice-9 unicode) module

See "Characters" in the manual.

** Web server

The (web server) module now exports 'make-server-impl', 'server-impl?',
and related procedures.  Likewise, (web server http) exports 'http'.

** New procedures: 'string-utf8-length' and 'scm_c_string_utf8_length'

See "Bytevectors as Strings" in the manual, for more.

** New 'EXIT_SUCCESS' and 'EXIT_FAILURE' Scheme variables

See "Processes" in the manual.

** New C functions to disable automatic SMOB finalization

The new 'scm_set_automatic_finalization_enabled' C function allows you
to choose whether automatic object finalization should be enabled (as
was the case until now, and still is by default.)  This is meant for
applications that are not thread-safe nor async-safe; such applications
can disable automatic finalization and call the new 'scm_run_finalizers'
function when appropriate.

See the "Garbage Collecting Smobs" and "Smobs" sections in the manual.

** Cross-compilation to ARM

More ARM cross-compilation targets are supported: "arm.*eb",
"^aarch64.*be", and "aarch64".

* New deprecation

** The undocumented and unused C function 'scm_string_hash' is now deprecated

* Bugs fixed

** Compiler
*** 'call-with-prompt' does not truncate multiple-value returns
    (<http://bugs.gnu.org/14347>)
*** Use permissions of source file for compiled file
    (<http://bugs.gnu.org/18477>)
*** Fix bug when inlining some functions with optional arguments
    (<http://bugs.gnu.org/17634>)
*** Avoid quadratic expansion time in 'and' and 'or' macros
    (<http://bugs.gnu.org/17147>)
*** Fix expander bug introduced when adding support for tail patterns
    (<http://lists.gnu.org/archive/html/guile-user/2015-09/msg00017.html>)
*** Handle ~p in 'format' warnings (<http://bugs.gnu.org/18299>)
*** Fix bug that exposed `list' invocations to CSE
    (<http://bugs.gnu.org/21899>)
*** Reduce eq? and eqv? over constants using equal?
    (<http://bugs.gnu.org/21855>)
*** Skip invalid .go files found in GUILE_LOAD_COMPILED_PATH

** Threads
*** Fix data races leading to corruption (<http://bugs.gnu.org/22152>)

** Memory management
*** Fix race between SMOB marking and finalization
    (<http://bugs.gnu.org/19883>)

** Ports
*** Setting GUILE_INSTALL_LOCALE=1 sets port default charset from locale
*** Fix port position handling on binary input ports
    (<http://bugs.gnu.org/20302>)
*** Bytevector and custom binary ports to use ISO-8859-1
    (<http://bugs.gnu.org/20200>)
*** Fix buffer overrun with unbuffered custom binary input ports
    (<http://bugs.gnu.org/19621>)
*** Fix memory corruption that arose when using 'get-bytevector-n'
    (<http://bugs.gnu.org/17466>)

** System
*** {get,set}sockopt now expect type 'int' for SO_SNDBUF/SO_RCVBUF
*** 'system*' now available on MS-Windows
*** 'open-pipe' now available on MS-Windows
*** Better support for file names containing backslashes on Windows

** Web
*** 'split-and-decode-uri-path' no longer decodes "+" to space
*** HTTP: Support date strings with a leading space for hours
    (<http://bugs.gnu.org/23421>)
*** HTTP: Accept empty reason phrases (<http://bugs.gnu.org/22273>)
*** HTTP: 'Location' header can now contain URI references, not just
    absolute URIs
*** HTTP: Improve chunked-mode support (<http://bugs.gnu.org/19939>)
*** HTTP: 'open-socket-for-uri' now sets better OS buffering parameters
    (<http://bugs.gnu.org/15368>)

** Miscellaneous
*** Fix 'atan' procedure when applied to complex numbers
*** Fix Texinfo to HTML conversion for @itemize and @acronym
    (<http://bugs.gnu.org/21772>)
*** 'bytevector-fill!' accepts fill arguments greater than 127
    (<http://bugs.gnu.org/19027>)
*** 'bytevector-copy' correctly copies SRFI-4 homogeneous vectors
   (<http://bugs.gnu.org/18866>)
*** 'strerror' no longer hangs when passed a non-integer argument
    (<http://bugs.gnu.org/18065>)
*** 'scm_boot_guile' now gracefully handles argc == 0
    (<http://bugs.gnu.org/18680>)
*** Fix 'SCM_SMOB_OBJECT_LOC' definition (<http://bugs.gnu.org/18495>)
*** Fix bug where 'bit-count*' was not using its second argument
*** SRFI-1 'length+' raises an error for non-lists and dotted lists
    (<http://bugs.gnu.org/17296>)
*** Add documentation for SXPath (<http://bugs.gnu.org/19478>)
2016-07-16 09:17:53 +00:00
wiz
bdde020ac2 Updated security/libgcrypt to 1.7.2 2016-07-16 08:36:02 +00:00
wiz
b42c80fa13 Updated libgcrypt to 1.7.2.
Noteworthy changes in version 1.7.2 (2016-07-14)  [C21/A1/R2]
------------------------------------------------

 * Bug fixes:

   - Fix setting of the ECC cofactor if parameters are specified.

   - Fix memory leak in the ECC code.

   - Remove debug message about unsupported getrandom syscall.

   - Fix build problems related to AVX use.

   - Fix bus errors on ARM for Poly1305, ChaCha20, AES, and SHA-512.

 * Internal changes:

   - Improved fatal error message for wrong use of gcry_md_read.

   - Disallow symmetric encryption/decryption if key is not set.
2016-07-16 08:35:52 +00:00
wiz
86e491510e Updated security/gnupg21 to 2.1.14 2016-07-16 08:32:15 +00:00
wiz
5768c670d6 Updated gnupg21 to 2.1.14.
Noteworthy changes in version 2.1.14 (2016-07-14)
-------------------------------------------------

 * gpg: Removed options --print-dane-records and --print-pka-records.
   The new export options "export-pka" and "export-dane" can instead
   be used with the export command.

 * gpg: New options --import-filter and --export-filter.

 * gpg: New import options "import-show" and "import-export".

 * gpg: New option --no-keyring.

 * gpg: New command --quick-revuid.

 * gpg: New options -f/--recipient-file and -F/--hidden-recipient-file
   to directly specify encryption keys.

 * gpg: New option --mimemode to indicate that the content is a MIME
   part.  Does only enable --textmode right now.

 * gpg: New option --rfc4880bis to allow experiments with proposed
   changes to the current OpenPGP specs.

 * gpg: Fix regression in the "fetch" sub-command of --card-edit.

 * gpg: Fix regression since 2.1 in option --try-all-secrets.

 * gpgv: Change default options for extra security.

 * gpgsm: No more root certificates are installed by default.

 * agent: "updatestartuptty" does now affect more environment
   variables.

 * scd: The option --homedir does now work with scdaemon.

 * scd: Support some more GEMPlus card readers.

 * gpgtar: Fix handling of '-' as file name.

 * gpgtar: New commands --create and --extract.

 * gpgconf: Tweak for --list-dirs to better support shell scripts.

 * tools: Add programs gpg-wks-client and gpg-wks-server to implement
   a Web Key Service.  The configure option --enable-wks-tools is
   required to build them; they should be considered Beta software.

 * tests: Complete rework of the openpgp part of the test suite.  The
   test scripts have been changed from Bourne shell scripts to Scheme
   programs.  A customized scheme interpreter (gpgscm) is included.
   This change was triggered by the need to run the test suite on
   non-Unix platforms.

 * The rendering of the man pages has been improved.
2016-07-16 08:32:05 +00:00
wiz
05af540f32 Request minimal libgpg-error version that is accepted by configure. 2016-07-16 08:27:47 +00:00
wiz
78c3ef2c19 Updated security/libgpg-error to 1.24 2016-07-16 08:21:22 +00:00
wiz
a673f0eee6 Updated security/libassuan2 to 2.4.3 2016-07-16 08:21:08 +00:00
wiz
0a219e39f6 Updated libassuan to 2.4.3.
Add TEST_TARGET.

Noteworthy changes in version 2.4.3 (2016-07-14) [C7/A7/R3]
------------------------------------------------

 * Allow socket redirection with assuan_socket_connect.

 * Speedup spawning programs on Linux

 * Fix minor memory leaks

 * Portability fixes for Solaris and AIX.
2016-07-16 08:20:56 +00:00
wiz
a34b4ea694 Updated libgpg-error to 1.24.
Noteworthy changes in version 1.24 (2016-07-14) [C19/A19/R1)
-----------------------------------------------

 * Fixes a bug in es_fclose_snatch when used used after es_fseek.

 * Fixes building without thread support.

 * New configure option --disable-tests.
2016-07-16 08:19:22 +00:00
wen
b4443f4ae6 Updated devel/p5-CPAN to 2.14 2016-07-16 07:25:59 +00:00
wen
b7788285ed Update to 2.14
Upstream changes:
2016-06-25  k  <andk@cpan.org>

	* release 2.14

	* three weeks after the trial release; cpantesters have generated 383
	passes, no fail

	* no changes except for a few in the distroprefs/ directory which do not
	count because it is not used per default

2016-06-04  k  <andk@cpan.org>

	* release 2.14-TRIAL

	* Fix failing tests on Windows (hopefully); tested on my i5-3317U
	notebook with Strawberry 5.24 and HARNESS_OPTIONS=j3: 104 wallclock secs

	* set SIGWINCH to IGNORE only when the key WINCH exists in %ENV (avert
	noise on boxes that do not support it)

	* fix a rare bug when ->expand returned nothing for whatever reason

	* improve diagnostics on fails during testing (but it is still very hard
	to debug these tests)

2016-05-16  k  <andk@cpan.org>

	* release 2.13-TRIAL

	* support for parallel running tests (tested with HARNESS_OPTIONS=j8)

	* bump all versions that have changed since 2.10 or 2.12 so we can
	generate a better pull request for bleadperl

2015-12-31  k  <andk@cpan.org>

	* release 2.12-TRIAL

	* merge in a lot of small changes to App::Cpan and cpan (brian d foy)

	* rt#92435: non-deterministic dependency handling (Zefram)

	* fix "Redundant argument in sprintf" (Father Chrysostomos)

	* rt#102867: sequential build dir names (Zefram)

	* rt#102429: Tarball with bad permissions may kill CPAN shell (Slaven Rezic)

	* rt#71722: Locking issues on Windows (Slaven Rezic, Andreas Koenig)

	* several small changes improving NFS file locking (Andreas Koenig)

	* warn if system returns -1 when trying to make (David Golden)

	* github#91: fixes Help to fit in an 80-character console window (Steve
	Hay, Andreas Koenig)

	* encourage plugin names of the style CPAN::Plugin::$something (Slaven Rezic)

	* rt#107353: set SIGWINCH to IGNORE (rene.schickbauer, Andreas Koenig)

	* rt#106009: bump dependency on IO::Scalar to 2.105
2016-07-16 07:24:51 +00:00
wen
9bc929a7ea Updated devel/p5-CPAN-Reporter to 1.2018 2016-07-16 07:15:10 +00:00
wen
864450be98 Update to 1.2018
Upstream changes:
1.2018    2016-06-21 15:05:12-04:00 America/New_York

  [CHANGED]

  - Expand list of environment variables included in reports
2016-07-16 07:14:10 +00:00
wen
f049e6628f Updated devel/p5-CPAN-Perl-Releases to 2.80 2016-07-16 06:55:10 +00:00
wen
5757834d56 Update to 2.80
Upstream changes:
version 2.80 at 2016-06-20 20:52:25 +0000
-----------------------------------------

  Change: eb8b805edeb4683414b78f34eedb2f59d53e9a8c
  Author: Chris 'BinGOs' Williams <chris@bingosnet.co.uk>
  Date : 2016-06-20 21:52:25 +0000

    Updated for v5.25.2
2016-07-16 06:53:24 +00:00
wen
4147088bb2 Updated devel/p5-Config-General to 2.62 2016-07-16 06:48:10 +00:00
wen
d864db20c2 Update to 2.62
Upstream changes:
2.62  - fix rt.cpan.org#115326: Callback on 'pre_open' not called
        when glob expands to one include file

      - added patch by Niels van Dijke, which adds apache IFDefine
        support. Use -UseApacheIfDefine=>1 to enable, add defines
        with -Define and add <IFDefine ...> to your config, see
        pod for details.

      - added test case for the code.

      - fixed unindented half of the pod, which was largely no
        readable because of this. However, I wonder why this hasn't
        reported, seems nobody reads the docs :)

      - fixed tab/space issues here and there
2016-07-16 06:46:08 +00:00
markd
a8850f3fac gcc6 build fix 2016-07-16 04:47:45 +00:00
wen
784020f1fa Updated devel/p5-Check-ISA to 0.08 2016-07-16 04:35:15 +00:00
markd
f6966a9d00 Fix building with linux-headers >= 3.9 2016-07-16 04:35:13 +00:00
wen
8137c6f8b1 Update to 0.08
Upstream changes:
0.08  2016-07-15 MANWAR
      - Added LICENSE file as reported by CPANTS.

0.07  2016-06-10 MANWAR
      - Added README file as reported by CPANTS.

0.06  2016-06-05 MANWAR
      - Updated Copyright details as suggested by Yuval Kogman (original author).
      - Added more information to the pod document.

0.05  2016-05-28 MANWAR
      - Tidied up pod document.
      - Tidied up Changes file.
      - Rewrote Makefile.PL script.
      - Added section "REPOSITORY".
      - Added standard 00-load.t script.
2016-07-16 04:34:24 +00:00
wen
c63a18328c Updated devel/p5-bareword-filehandles to 0.004 2016-07-16 04:30:09 +00:00
wen
6b996341c3 Update to 0.004
Upstream changes:
0.004     2016-05-16 19:18:36+01:00 Europe/London
 - fix POD typo (RT#76421)
 - Use "bareword::filehandles/disabled" as the hint hash key
 - Fix building on -DPERL_OP_PARENT perls (RT#114394)
2016-07-16 04:29:13 +00:00
wen
a1541a0044 devel/p5-B-Hooks-OP-PPAddr 2016-07-16 04:26:30 +00:00
wen
b8f68ac4a6 Update to 0.05
Upstream changes:
0.05      2016-07-13 01:26:33Z
  - release 0.04_01 as stable, with tooling updates.

0.04_01   2009-09-25 15:48:45Z
  - Store static data more safely.
2016-07-16 04:25:02 +00:00
markd
2ec922e06d gcc6 build fix 2016-07-16 04:14:03 +00:00
wen
bcf0c09db3 Updated geography/py-obspy to 1.0.1 2016-07-16 04:13:22 +00:00
wen
33a2b1e086 Update to 1.0.1
Update DEPENDS

Upstream changes:
1.0.1: (doi: 10.5281/zenodo.48254)
 - General:
   * Some methods might have unnecessarily upcasted float32 arrays to float64.
     Now methods for which it makes sense and which don't lose accuracy don't
     upcast float32 arrays. Integers are still upcasted. Trace.resample() will
     also no longer return the original dtype which might have resulted in a
     large loss of accuracy but it now always returns float64 arrays.
     (see #1302)
 - obspy.core:
   * Trace.normalize() does no longer divide by zero in case an all-zeros
     data trace is being used. (see #1343)
   * Inventory.select() and consorts now behave as expected even with empty
     child elements. (see #1126, #1348)
   * Code formatting is no longer checked for clean release versions. Thus
     updates to the linters no longer break the tests for releases.
     (see #1312)
   * remove_response(..., pre_file=None, plot=True) works again. (see #1320)
 - obspy.clients.arclink:
   * Restored ArcLink encryption support. (see #1352, #1347)
 - obspy.clients.fdsn:
   * Local URLs are now recognized as valid URLs. (see #1309)
   * Some bug fixes for the mass downloader. (see #1293, #1304)
   * The NOA node has been added to the list of known nodes.
     (see 2347a25714bc3e16068031f4b6138fafd627d34e)
 - obspy.io.sac:
   * More automatic merging of SAC and ObsPy headers. The new `obspy.io.sac`
     modules thus behaves more like the old one and more in line with
     expectations of users. (see #1285)
   * No more out of bounds errors when assigning coordinates. (see #1300)
   * The evdp header can be set again. (see #1345)
   * Correctly propagating sampling rate changes to the SAC headers.
     (see #1317)
   * Always set nvhdr, leven, lovrok, iftype to ensure valid SAC files.
     (see #1204)
 - obspy.io.xseed:
   * The Parser.get_paz() method now works with multiple blockette 53s.
     (see #1281)
 - obspy.taup
   * Fixed wrong azimuth direction for paths > 180 degrees distance (see #1289)
   * Azimuth is appended to arrivals as well (see #1289)
   * Fixed issue with taup cache function on Python 2.7. (see #1308)

1.0.0:
 - General:
   * Requirements have been increased to reflect latest distributions:
     * Removed support for Python 2.6.
     * Added support for Python 3.5.
     * matplotlib >= 1.1.0 is now required.
     * numpy >= 1.6.1 is now required
     * scipy >= 0.9.0 is now required
   * Reorganized the submodule structure. We provide a deprecation path so the
     old imports will continue to work for one ObsPy version.
   * Consistent naming scheme across the code base. This results in some
     functions having different names. Most things that worked with ObsPy 0.10
     will continue to work with this version, but starting with the next
     version they will fail. Pay attention to the deprecation warnings.
   * Support for additional waveform data formats:
     - Read support for the ASCII format for waveforms from the K-NET and
       KiK-net strong-motion seismograph networks.
   * Support for additional event data formats:
     - CMTSOLUTION files used by many waveform solvers.
     - ESRI shapefile write support, useful in GIS applications (see #1066)
     - Google Earth KML output.
   * Support for additional station data format:
     - The FDSN web service station text format can now be read.
     - Read support for the NIED's moment tensor TEXT format (see #1125)
     - Google Earth KML output.
     - Read support for SeisComP3 inventory files.
 - obspy.core:
   * New method for generating sliding windows from Stream/Trace windows.
     (see #860)
   * Stream/Trace.slice() now has the optional `nearest_sample` argument from
     Stream/Trace.trim().
   * Trace.remove_response() now has `plot` option to show/output a plot of all
     individual steps of instrument response removal in frequency domain
     (see #1116).
   * New method Stream/Trace.remove_sensitivity() to remove instrument
     sensitivity
   * Fix incorrect parsing of some non-ISO8601 date/time strings. (see #1215)
   * Added plotting method to Event (customizable subplots from a selection
     of map, beachball and farfield radiation plots, see #1192)
 - obspy.clients.fdsn:
   * Replace FDSN webservice shortcut `NERIES` with `EMSC` and deprecate the
     `NERIES` shortcut, will be removed in a future release (see #1146).
   * Now requests gzipped data for the XML files. Much smaller files!
   * The station service can now also be used to download files in the text
     format. This has limited information but is much faster.
   * New mass downloader to assist in downloading data across a large number
     of FDSN web services.
   * Catch invalid URLs when initialising Client and avoid confusing error
     messages (see #1162)
 - obspy.clients.filesystem.sds:
   * New client to read data from local SDS directory structure (see #1135).
   * Command line script `obspy-sds-report` to generate html page with
     information on latency, data availability percentage and number of gaps
     for a local SDS archive (see #1202)
 - obspy.clients.neries:
   * Removed the dedicated client. Data can still be accessed by using the FDSN
     client.
 - obspy.clients.syngine:
   * New client for the IRIS Syngine service to retrieve custom synthetic
     seismograms.
 - obspy.imaging:
   * Experimental support for Cartopy when plotting maps. Use the `method`
     argument to functions that plot maps to select between Basemap or Cartopy.
   * New default colormap for all plots. A backport of the new viridis colormap
     from matplotlib is available for those using older matplotlib releases.
   * Added plotting routines for farfield radiation patterns of moment tensors
 - obspy.io.kml:
   * New module for Google KML output of Inventory and Catalog objects
     (e.g. for use in Google Earth)
 - obspy.io.mseed:
   * Upgrade to libmseed 2.16
 - obspy.io.seiscomp.sc3ml:
   * New module reading SeisComP3 inventory files to ObsPy inventory objects
     (see #1182).
 - obspy.io.shapefile:
   * New module for ESRI shapefile write support (see #1066)
 - obspy.io.stationtxt:
   * New module reading the FDSN station files.
 - obspy.signal:
   * Switch to second-order sections for filters; backported from SciPy 0.16.0
     (see #1028)
   * New Lanczos interpolation/resampling (see #1101)
   * Higher order detrending methods (see #1173)
   * PPSD (see #931, #1108, #1130, #1187):
     - Algorithm for PSD computation was improved, especially affecting results
       at long periods (for detailed discussion see #931 and #1108).
     - Keywords `paz` and `parser` were removed in favor of new keyword
       `metadata`. PPSD now accepts `metadata` in a much wider range
       of formats:
          * Inventory objects (e.g. from StationXML or from FDSN webservice)
          * obspy.io.xseed Parser objects (e.g. from dataless SEED file)
          * filename of a RESP file
          * dictionary with poles and zeros information (like in
            prior versions)
       Most old codes should still work, issuing a deprecation warning, but
       old code that specifies *both* `paz` and `parser` keywords will raise
       an exception.
     - Whenever possible (i.e. when using for `metadata` an Inventory,
       a Parser or a RESP file), response calculation now takes into account
       the full response (all stages) as opposed to only using the poles and
       zeros response stage (as was done in previous versions when using a
       Parser object). When using a poles and zeros dictionary response
       calculation is unchanged (as no information on other stages is
       available, of course).
     - PPSD now stores the psd for each time segment that gets processed,
       instead of only storing the stacked histogram. That way, differing
       custom stacks with various selection criteria (e.g. time of day, by
       weekday, etc.) can now be made from the same processed data
       (see #1130).
     - New save/load mechanism using numpy .npz binary format that circumvents
       some problems with the old pickle mechanism:
       `PPSD.save_npz()` and `PPSD.load_npz()` (and `PPSD.add_npz()` to add
       data from additional npz files)
     - Change default colormap to new obspy default sequential colormap
       (matplotlibs new viridis colormap). The old PQLX colormap is provided by
       `obspy.imaging.cm.pqlx` and can be used with
       `PPSD.plot(..., cmap=...)`.
     - new option `PPSD.plot(..., cumulative=True)` for a cumulative plot of
       the histogram, i.e. a non-exceedence percentage visualization, similar
       to the `percentile` option.
     - x axis in `PPSD.plot()` can be switched to frequency in Hz with
       `PPSD.plot(..., xaxis_frequency=True)` (see #1130)
     - changes to special handling of rotational: now handled by kwarg
       `special_handling="ringlaser"` (kwarg `is_rotational_data` is
       deprecated, see #916)
     - special handling option for hydrophone data (no differentiation, see
       #916)
     - bin width on frequency axis can now be controlled using
       `PPSD(..., frequency_bin_width_octaves=...)` (in fractions of octaves,
       default is the old fixed setting of 1/8 octaves as in PQLX)
 - obspy.taup
   * Added support for nd file format for input velocity models. Allows for
     named discontinuities at arbitrary depths allowing for less Earth like
     models (see #1147).
   * Added three methods (`get_travel_times_geo()`, `get_pierce_points_geo()`
     and `get_ray_paths_geo()`) to `TauPyModel` to handle station and
     event location data as latitude and longitude, instead of the source to
     station distance in degrees. In addition `get_ray_paths_geo()` and
     `get_pierce_points_geo()` decorate the returned pierce points and ray
     paths with the latitude and longitude of each point. Some functionality
     needs the `geographiclib` module to be installed. (See #1164.)
   * ObsPy now ships with a bunch of new velocity models in addition to the
     existing ones: `prem`, `sp6`, `1066a,b`, `herrin` (See #1196).
   * Add support for buried receivers (see #1103.)
   * Port more accurate calculation of ray parameter from Java. The effect is
     stronger for longer phases, but also corrects issues with shorter body and
     surface waves (see #986.)
   * Fix incorrect branch splitting which also caused issues for extremely
     shallow phases (see #1057.)
   * Proper cache for model splits resulting in much faster calculations if
     the source depth is repeatedly the same (see #1248).

0.10.3:
  - obspy.core:
    * Fix reading of multiple catalog files using globs (see #1065).
    * Fixed a bug when using
      `Trace.remove_response(..., water_level=None)`.
      With that setting that is supposed to not use any water level
      stabilization in the inversion of the instrument response
      spectrum actually the instrument response was never inverted and
      thus instead of a deconvolution a convolution was performed
      (see #1104).
    * Fixing floating point precision/rounding issue with UTCDateTime when
      initializing with floating point seconds, i.e. with microseconds,
      that could lead to microseconds being off by 1 microsecond
      (see #1096)
    * Correct gap/overlap time returned by Stream.get_gaps() and printed
      by Stream.print_gaps() which was incorrect by one time the sampling
      interval (see #1151)
    * Stream.get_gaps(): return overlaps specified in units of samples
      as negative integers (see #1151)
  - obspy.fdsn:
    * More detailed error messages on failing requests (see #1079)
    * Follows redirects for POST requests (see #1143)
  - obspy.imaging:
    * fix some bugs in `obspy-scan` (see #1138)
  - obspy.mseed:
    * Blockette 100 is now only written for Traces that need it. Previously
      it was written or not for all Traces, depending on whether the last
      Trace needed it or not. (see #1069)
    * Fixed a bug that prevented microsecond accuracy for times before 1970
      (see #1102).
    * Updated to libmseed 2.17.
  - obspy.signal:
    * Bug fixed within rotate.rotate2zne(). Additionally it can now also
      perform the inverse rotation (see #1061).
    * Bug fixed in triggering. When using option `max_len_delete` and a trigger
      occurred right before the end of data, one trigger was potentially lost
      (see #1145 for details).
  - obspy.station:
    * Plotting responses across multiple channels is more robust now in
      presence of some strange channels (e.g. with zero sampling rate,
      happens e.g. for state of health channels, see #1115)
    * ObsPy no longer assumes that the StationXML namespace is the default
      namespace (see #1060).
    * Checking if a file is a StationXML file is less rigorous (and much
      faster) now (not checking strict validity against xsd schema but
      only looking for a FDSNStationXML root element, see #1114).
      This means that `read_inventory()` without explicitly specified
      format will correctly detect more files as StationXML that have very
      slight breaches of the schema but still can be interpreted as
      StationXML.
    * fix saving `xcorrPickCorrection()` results to an image file (see #1154)
  - obspy.taup:
    * Calculating arrival times for surface waves now works (see #1055)
    * Calculating arrivals for underside reflections now works (see #1089)
  - obspy.y:
    * correct misspelled name of a Y specific header field (see #1127)
  - obspy.zmap
    * Add support for time values with sub-second precision (see #1093)
2016-07-16 04:11:55 +00:00
markd
8e971ec5da gcc6 build fix 2016-07-16 04:02:13 +00:00
markd
095af3cd0c gcc6 build fix 2016-07-16 03:49:56 +00:00
markd
5c7f5f1b7a Fix build with gcc6 2016-07-16 03:36:51 +00:00
markd
077fd7ef7a Switch to using wxGTK30 and fix build with gcc6. 2016-07-16 03:32:32 +00:00
markd
94193de7f1 gcc6 build fix and deal with an openssl that has OPENSSL_NO_SSL3 set 2016-07-16 03:23:50 +00:00
wen
e7ff0197fa Updated devel/p5-App-perlbrew to 0.76 2016-07-16 03:08:19 +00:00
wen
54714d4d89 Update to 0.76
Upstream changes:
0.76: # 2016-06-21T23:02:44+0200
- Start supporting cperl installation.
- cperl releases are sourced from: https://github.com/perl11/cperl/releases
- Deal with a regex warning when testing perlbrew with perl-5.25. See RT: https://rt.cpan.org/Ticket/Display.html?id=114871
2016-07-16 03:07:14 +00:00
wen
f196923903 Updated databases/p5-Search-QueryParser-SQL to 0.010 2016-07-16 02:56:36 +00:00
wen
32d2406301 Update to 0.010
Upstream changes:
0.010 28 Feb 2014
 - add 'lower' feature to parser

0.009 20 Aug 2013
 - switch to github
 - fix for RT https://rt.cpan.org/Ticket/Display.html?id=87287 where
   implicit OR applied in dbic() and rdbo() structures when implicit AND
   was more appropriate.
2016-07-16 02:55:13 +00:00
wen
aed2a22fee Updated databases/p5-Rose-DBx-Garden to 0.193 2016-07-16 02:51:11 +00:00
wen
dce85edfb0 Update to 0.193
Update DEPENDS

Upstream changes:
0.193 10 July 2014
 - fix whitespace regression bug introduced in 0.192. Reported
   by Holger Rupprecht via f7c65ec.

0.192 8 July 2014
 - support Loader base_classes method in _schema_template().
   Cf. https://rt.cpan.org/Ticket/Display.html?id=97043

0.191 19 June 2014
 - remove the DEVELOPMENT RELEASE caveat. after this many years, it is as
   stable as it will ever be.
 - mkpath(self->debug) instead of mkpath(1) [ https://rt.cpan.org/Ticket/Display.html?id=96552 ]

0.190 15 May 2014
 - switch to File::Slurp::Tiny
2016-07-16 02:49:28 +00:00
wen
d65dcc6ed5 Updated databases/p5-Rose-DB to 0.778 2016-07-16 02:37:22 +00:00
wen
534a1499a7 Update to 0.778
Upstream changes:
0.778 (06.28.2016) - John Siracusa <siracusa@gmail.com>

    * Added mysql_enable_utf8mb4 attribute. (Patch by Alexander Karelas.)
    * Updated tests for the latest versions of MySQL and DateTime::Format::Pg.
2016-07-16 02:36:32 +00:00
wen
a6234fd68e Updated databases/p5-DBIx-Class to 0.082840 2016-07-16 02:27:48 +00:00
wen
8d318b0580 Update to 0.082840
Upstream changes:
0.082840 2016-06-20 07:02 (UTC)
    * New Features
        - When using non-scalars (e.g. arrays) as literal bind values it is no
          longer necessary to explicitly specify a bindtype (this turned out
          to be a mostly useless overprotection)

    * Fixes
        - Ensure leaving an exception stack via Return::MultiLevel or something
          similar produces a large warning
        - Another relatively invasive set of ::FilterColumn changes, covering
          potential data loss (RT#111567). Please run your regression tests!
        - Ensure failing on_connect* / on_disconnect* are dealt with properly,
          notably on_connect* failures now properly abort the entire connect
        - Fix use of ::Schema::Versioned combined with a user-supplied
          $dbh->{HandleError} (GH#101)
        - Fix parsing of DSNs containing driver arguments (GH#99)
        - Fix silencing of exceptions thrown by custom inflate_result() methods
        - Fix complex prefetch when ordering over foreign boolean columns
          ( Pg can't MAX(boolcol) despite being able to ORDER BY boolcol )
        - Fix infinite loop on ->svp_release("nonexistent_savepoint") (GH#97)
        - Fix spurious ROLLBACK statements when a TxnScopeGuard fails a commit
          of a transaction with deferred FK checks: a guard is now inactivated
          immediately before the commit is attempted (RT#107159)
        - Fix the Sybase ASE storage incorrectly attempting to retrieve an
          autoinc value when inserting rows containing blobs (GH#82)
        - Remove spurious exception warping in ::Replicated::execute_reliably
          (RT#113339)
        - Work around unreliable $sth->finish() on INSERT ... RETURNING within
          DBD::Firebird on some compiler/driver combinations (RT#110979)
        - Fix leaktest failures with upcoming version of Sub::Quote
        - Really fix savepoint rollbacks on older DBD::SQLite (fix in 0.082800
          was not sufficient to cover up RT#67843)

    * Misc
        - Test suite is now officially certified to work under very high random
          parallelism: META x_parallel_test_certified set to true accordingly
        - Typo fixes from downstream debian packagers (RT#112007)
2016-07-16 02:26:58 +00:00
wen
1af158ad37 Updated databases/p5-DBIx-Class-Helpers to 2.033000 2016-07-16 01:58:51 +00:00
wen
62585ea287 Update to 2.033000
Upstream changes:
2.033000  2016-07-03 22:02:03-07:00 America/Los_Angeles
 - Add ::Schema::Verifier::ColumnInfo (Thanks Wes Malone!) (Closes GH#67)
 - Uninserted rows do not set their storage value anymore
   (Thanks for the report Wes Malone!) (Closes GH#69)

2.032002  2016-05-24 10:00:16-07:00 America/Los_Angeles
 - Fix variation in list context when using ::OnColumnMissing
   (Thanks to David Farrell for the bug report!)
   (Closes GH#63)
2016-07-16 01:57:15 +00:00