Commit graph

11 commits

Author SHA1 Message Date
wiz
00da7815c0 *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
rillig
65eb834533 biology/canu: fix build on NetBSD-8.0-x86_64 2020-05-16 19:50:21 +00:00
rillig
58f7f30d7c biology/canu: fix SUBST blocks to actually find the Java code 2020-05-16 19:40:59 +00:00
rillig
3c4a7bd5ca biology/canu: don't try to chmod system binaries
/usr/bin/chmod -R g-w /home/pbulk/build/biology/canu/work
chmod: WARNING: can't change /home/pbulk/build/biology/canu/work/.gcc/bin/cc
chmod: WARNING: can't change /home/pbulk/build/biology/canu/work/.gcc/bin/g++

Just good that serious pkgsrc builds are run as an unprivileged user,
with no chance of bricking the whole operating system.
2020-05-14 18:30:05 +00:00
adam
7d4b705c63 revbump after boost update 2020-05-06 14:04:05 +00:00
ryoon
eedd1e806f *: Recursive revbump from devel/boost-libs 2020-01-12 20:19:52 +00:00
ryoon
edacf2bbcb Recursive revbump from boost-1.71.0 2019-08-22 12:22:48 +00:00
wiz
84e123ddd2 Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
ryoon
57d0806c39 Recursive revbump from boost-1.70.0 2019-07-01 04:07:44 +00:00
nia
b21b6149c2 More http -> https.
Reviewed by hand.
2019-06-24 10:59:40 +00:00
bacon
94e269c682 biology/canu: import canu-1.8
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule
sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

    Detect overlaps in high-noise sequences using MHAP

    Generate corrected sequence consensus

    Trim corrected sequences

    Assemble trimmed corrected sequences
2019-01-07 02:33:17 +00:00