5909 commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
mef
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0d497374ec |
(math/mpfr) Adding official patch mpfr-4.1.1 to 4.1.1p
openscad-2021.01nb13 failed with math/mpfr-4.1.1 http://www.ki.nu/pkgsrc/reports/current/NetBSD-9.0/20221123.2254/openscad-2021.01nb13/build.log For this problem and as well as https://github.com/CGAL/cgal/issues/7064 patch is supplied at https://www.mpfr.org/mpfr-4.1.1/patch01 and patches are one of the pieces: for file to file from above. See also: http://mail-index.netbsd.org/pkgsrc-users/2022/11/26/msg036540.html openscad has PKGREVISION++ because of icu update almost at the same time, and not packaged since then, so no PKGREVISION++ is necessary, (OK ?) |
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wiz
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8d14cea65d | py-statsmodels: add py-setuptools_scm tool dependency to fix PLIST | ||
adam
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cc34ee3bc6 | massive revision bump after textproc/icu update | ||
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adam
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da3a5a0187 |
py-patsy: updated to 0.5.3
v0.5.3 ------ * Officially add support for Python 3.10 and 3.11, and extend test coverage to include these releases. * Fix handling of future interpreter features that no longer have a mandatory release version, as for the `annotations` feature |
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adam
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23eae29e42 |
libnumbertext: updated to 1.0.11
1.0.11 release: * Soros.cxx/java/js/py: fix boundary inheritance of optional function (conditional text), reported by Juanma Sanchez and Antonio Bueno * test/*, configure.ac, Makefile.am: add C++ unit testing * Soros.cxx: fix an assert seen with in libreoffice crashtesting on an empty string, by Caolán McNamara New modules: * fa.sor: new Persian (Farsi) module by Amir Hossein Maher * mul.sor: new module with note symbols for multiple languages Module fixes and extensions: * ca.sor: revert removing conditional text * cs.sor: fix ordinals, cardinals, currencies by Stanislav Horáček, with help of Zdeněk Crhonek * da.sor: revert removing conditional text * en.sor: add extra currencies (BZF, DKK, ILS, LKR, ZMW, ZWD) for LibreOffice locales of Number Format dialog windows * es.sor: add extra currencies (PAB, SVC, VED/VES) for LibreOffice, revert removing conditional text * ga.sor: add currency support * hu_Hung.sor: fix regression of transliteration of parenthesized words in LibreOffice, reported by Zoltán Óvári * ro.sor: strip first space and remove double space in currency * ru.sor: fix grammar of cents by Alex Ivanov * sl.sor: fix cardinal-masculine and cardinal-neuter, reported by Martin Srebotnjak * uk.sor: fix grammar of cents by Alex Ivanov LibreOffice Calc add-on: * CalcAddIn.xcu: new Russian translation by Evgeniy Kukhtinov |
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adam
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86a4dd667b |
mpfr: updated to 4.1.1
Changes from version 4.1.0 to version 4.1.1 Bug fixes (see the fixed bugs on the MPFR 4.1.0 page and/or the ChangeLog file), in particular for macros implementing functions. Improved manual formatting. |
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jperkin
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6789d44009 |
*: Re-apply SunOS linker argument removals.
These are currently duplicated in mk/platform/SunOS.mk but the generic removals will be removed soon in favour of per-package removals, due to flags getting leaked into installed files. |
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adam
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9ca49f4085 |
py-sympy: updated to 1.11.1
1.11.1 Changes utilities The 1.11 release introduced a regression when using lambdify with the cse=True option (introduced in 1.9) resulting in a list being returned for a lambdified expression that was not a list. This bug is now fixed in the 1.11.1 release. 1.11.0 Better support for integrating several different types of expressions. The series expansion has seen several improvements. The assumption system is now fully deterministic, so it should work in multi-threaded environments. A new and improved Mathematica parser. |
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wiz
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19072bf9c7 |
py-statsmodels: update to 0.13.5.
Major news: New cross-sectional models Beta Regression BetaModel estimates a regression model for dependent variable in the unit interval such as fractions and proportions based on the Beta distribution. The Model is parameterized by mean and precision, where both can depend on explanatory variables through link functions. Ordinal Regression statsmodels.miscmodels.ordinal_model.OrderedModel implements cumulative link models for ordinal data, based on Logit, Probit or a userprovided CDF link. Distributions Copulas Statsmodels includes now basic support for mainly bivariate copulas. Currently, 10 copulas are available, Archimedean, elliptical and asymmetric extreme value copulas. CopulaDistribution combines a copula with marginal distributions to create multivariate distributions. Count distribution based on discretization DiscretizedCount provides count distributions generated by discretizing continuous distributions available in scipy. The parameters of the distribution can be estimated by maximum likelihood with DiscretizedModel. Bernstein Distribution BernsteinDistribution creates nonparametric univariate and multivariate distributions using Bernstein polynomials on a regular grid. This can be used to smooth histograms or approximate distributions on the unit hypercube. When the marginal distributions are uniform, then the BernsteinDistribution is a copula. Statistics Brunner Munzel rank comparison Brunner-Munzel test is nonparametric comparison of two samples and is an extension of Wilcoxon-Mann-Whitney and Fligner-Policello tests that requires only ordinal information without further assumption on the distributions of the samples. Statsmodels provides the Brunner Munzel hypothesis test for stochastic equality in rank_compare_2indep but also confidence intervals and equivalence testing (TOST) for the stochastically larger statistic, also known as Common Language effect size. Nonparametric Asymmetric kernels Asymmetric kernels can nonparametrically estimate density and cumulative distribution function for random variables that have limited support, either unit interval or positive or nonnegative real line. Beta kernels are available for data in the unit interval. The available kernels for positive data are “gamma”, “gamma2”, “bs”, “invgamma”, “invgauss”, “lognorm”, “recipinvgauss” and “weibull” pdf_kernel_asym estimates a kernel density given a bandwidth parameter. cdf_kernel_asym estimates a kernel cdf. Time series analysis Autoregressive Distributed Lag Models ARDL adds support for specifying and estimating ARDL models, and UECM support specifying models in error correction form. ardl_select_order simplifies selecting both AR and DL model orders. bounds_test implements the bounds test of Peseran, Shin and Smith (2001) for testing whether there is a levels relationship without knowing teh orders of integration of the variables. Fixed parameters in ARIMA estimators Allow fixing parameters in ARIMA estimator Hannan-Rissanen (hannan_rissanen) through the new fixed_params argument |
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adam
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8f5e7b8ba6 |
py-numpy: updated to 1.23.5
1.23.5 TST, MAINT: Replace most setup with setup_method (also teardown) MAINT, CI: Switch to cygwin/cygwin-install-action@v2 TST: Make test_partial_iteration_cleanup robust but require leak... MAINT: Ensure graceful handling of large header sizes TYP: Spelling alignment for array flag literal BUG: Fix bounds checking for ``random.logseries`` DEV: Update GH actions and Dockerfile for Gitpod CI: Only fetch in actions/checkout BUG: Decrement ref count in gentype_reduce if allocated memory... BUG: Histogramdd breaks on big arrays in Windows |
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wiz
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df1b666827 | py-tables: fix build for python 3.11 | ||
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adam
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5d6bfcc77c |
py-asteval: updated to 0.9.28
0.9.28 add support for Python 3.11 add support for multiple list comprehensions improve performance of making the initial symbol table, and Interpreter creation, including better checking for index_tricks attributes |
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wiz
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d162d8fdbe |
py-scikit-image: update to 0.19.3.
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.3
Bugs Fixed
Revert unintentional change to default multichannel behavior introduced in v0.19.0 for skimage.restoration.cycle_spin (now defaults to single channel again)
Fix corner case with an optimal angle of 0 degrees in hough_line_peaks
Fixed the gallery example involving registration with log-polar transformations
Update test suite for compatibility with the most recent tifffile release.
warp/rotate: fixed a bug with clipping when cval is not in the input range
Fix computation of histogram bins for multichannel integer-valued images
General Maintenance
Update skimage.future.manual_polygon_segmentation to work with Matplotlib 3.5.
Update skimage.io.imread to avoid warnings when using imageio>=2.16.2.
Now compatible with Pillow >= 9.1 (palette may contain <256 entries)
Added support for NumPy 1.23
Pull Requests Included
Backport PR #6306 on branch v0.19.x (Fix for error in 'Using Polar and Log-Polar Transformations for Registration') (#6312)
Backport PR #6271 on branch v0.19.x (hough_line_peaks fix for corner case with optimal angle=0) (#6313)
Backport PR #6261 on branch v0.19.x (Ignore sparse matrix deprecation warning) (#6316)
backport PR 6328: Fix issue with newer versions of matplotlib in manual segmentation (#6334)
Backport PR #6343 on branch v0.19.x (avoid warnings about change to v3 API from imageio) (#6344)
Backport PR #6355 on branch v0.19.x (remove use of deprecated kwargs from test_tifffile_kwarg_passthrough) (#6357)
Backport PR #6352 on branch v0.19.x (Fix channel_axis default for cycle_spin) (#6358)
Backport PR #6348 on branch v0.19.x (Fix smoothed image computation when mask is None in canny) (#6359)
Backport PR #6361 on branch v0.19.x (Document support for Path objects in io functions) (#6363)
Backport PR #6400 on branch v0.19.x (Add support for NumPy 1.23) (#6403)
Backport PR #6335 on branch v0.19.x (warp/rotate: fixed a bug with clipping when cval is not in the input range) (#6411)
Backport PR #6413 on branch v0.19.x (Fix computation of histogram bins for multichannel integer-valued images) (#6414)
0.19.2
Pull Requests Included
fix mistake in tests.yml made during backport (gh-6129)
Backport PR #6145 on branch v0.19.x (Fix channel_axis handling in pyramid_gaussian and pyramid_laplace) (gh-6155)
Backport PR #6130 on branch v0.19.x (bump deprecated Azure windows environment) (gh-6131)
Backport PR #6148 on branch v0.19.x (deprecate n_iter_max (should be max_num_iter)) (gh-6156)
Backport PR #6152 on branch v0.19.x (specify python version used by mybinder.org for gallery demos) (gh-6157)
Backport PR #6139 on branch v0.19.x (fix phase_cross_correlation typo) (gh-6158)
Backport PR #6133 on branch v0.19.x (Update user warning message for viewer module.) (gh-6159)
Backport PR #6169 on branch v0.19.x (Fix unintended change to output dtype of match_histograms) (gh-6172)
Backport PR #6184 on branch v0.19.x (Fix SIFT wrong octave indices + typo) (gh-6186)
Backport PR #6191 on branch v0.19.x (Fix issue6190 - inconsistent default parameters in pyramids.py) (gh-6193)
Backport PR #6207 on branch v0.19.x (Always set params to nan when ProjectiveTransform.estimate fails) (gh-6210)
Backport PR #5262 on branch v0.19.x (Add textbook-like tutorial on measuring fluorescence at nuclear envelope.) (gh-6213)
Backport PR #6087 on branch v0.19.x (Add two datasets for use in upcoming scientific tutorials.) (gh-6215)
Backport PR #6214 on branch v0.19.x (EuclideanTransform.estimate should return False when NaNs are present) (gh-6221)
Backport PR #6219 on branch v0.19.x (Allow the output_shape argument to be any iterable for resize and resize_local_mean) (gh-6222)
Backport PR #6223 on branch v0.19.x (Update filename in testing instructions.) (gh-6225)
Backport PR #6231 on branch v0.19.x (Update imports/refs from deprecated scipy.ndimage.filters namespace) (gh-6233)
Backport PR #6229 on branch v0.19.x (Remove redundant testing on Appveyor) (gh-6234)
Backport PR #6183 on branch v0.19.x (Fix decorators warnings stacklevel) (gh-6238)
Backport PR #6239 on branch v0.19.x (DOC: fix SciPy intersphinx) (gh-6241)
Backport PR #6232 on branch v0.19.x (Include Cython sources via package_data) (gh-6244)
Backport PR #6227 on branch v0.19.x (Fix calculation of Z normal in marching cubes) (gh-6245)
Backport PR #6242 on branch v0.19.x (Fix bug in SLIC superpixels with enforce_connectivity=True and start_label > 0) (gh-6246)
Backport PR #6211 on branch v0.19.x (PiecewiseAffineTransform.estimate return should reflect underlying transforms) gh-6247
update MacOS libomp installation in wheel building script (gh-6249)
0.19.1
Pull Requests Included
Backport PR #6097 on branch v0.19.x (Restore non-underscore functions in skimage.data) (gh-6099)
Backport PR #6095 on branch v0.19.x (Preserve backwards compatibility for channel_axis parameter in transform functions) (gh-6100)
Backport PR #6103 on branch v0.19.x (Make rank filter test comparisons robust across architectures) (gh-6106)
Backport PR #6105 on branch v0.19.x (Pass a specific random_state into ransac in test_ransac_geometric) (gh-6107)
Fix two equality comparison bugs in the wheel build script (gh-6098)
Backport of gh-6109 (Add linker flags to strip debug symbols during wheel building) (gh-6110)
Pin setuptools maximum in v0.19.x to avoid breaking on planned distutils API changes (gh-6112)
Avoid potential circular import of rgb2gray (gh-6113)
Backport PR #6089 on branch v0.19.x (Skip tests requiring fetched data) (gh-6115)
Backport PR #6118 on branch v0.19.x (Fixes to tests.yml and fixes for expected warnings) (gh-6127)
Backport PR #6114 on branch v0.19.x (Relax test condition to make it more robust to variable CI load) (gh-6128)
0.19.0
A highlight of this release is the addition of the popular
scale-invariant feature transform (SIFT) feature detector and
descriptor. This release also introduces a perceptual blur metric,
new pixel graph algorithms, and most functions now operate in
single-precision when single-precision inputs are provided. Many
other bug fixes, enhancements and performance improvements are
detailed below.
A significant change in this release is in the treatment of
multichannel images. The existing multichannel argument to functions
has been deprecated in favor of a new channel_axis argument.
channel_axis can be used to specify which axis of an array contains
channel information (with channel_axis=None indicating a grayscale
image).
scikit-image now uses "lazy loading", which enables users to access
the functions from all skimage submodules without the overhead of
eagerly importing all submodules. As a concrete example, after
calling "import skimage" a user can directly call a function such
as skimage.transform.warp whereas previously it would have been
required to first "import skimage.transform".
An exciting change on the development side is the introduction of
support for Pythran as an alternative to Cython for generating
compiled code. We plan to keep Cython support as well going forward,
so developers are free to use either one as appropriate.
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wiz
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e773708062 |
py-pywavelets: update to 1.4.1.
============================== PyWavelets 1.1.0 Release Notes ============================== We are very pleased to announce the release of PyWavelets 1.1. This release includes enhanced functionality for both the stationary wavelet transforms (``swt``, ``swt2``, ``swtn``) as well as the continuous wavelet transform (``cwt``). In addition, there are a handful of bug fixes as described in more detail below. This release has dropped Python 2.7 support and now requires Python >= 3.5. ============================== PyWavelets 1.1.1 Release Notes ============================== This release is identical in functionality to 1.1.0. It fixes setup.py to prevent pip from trying to install from PyPI for Python < 3.5. ============================== PyWavelets 1.2.0 Release Notes ============================== We are very pleased to announce the release of PyWavelets 1.2. This release has new discrete wavelet transforms features incleading a series of multiresolution analysis functions (details below). PyWavelets has dropped support for Python 3.5 and 3.6 and now supports Python 3.7-3.10. We also now provide aarch64 linux wheels as well as universal2 and arm64 wheels that are compatible with Apple's M1 processors. ============================== PyWavelets 1.3.0 Release Notes ============================== We are very pleased to announce the release of PyWavelets 1.3. This release is functionally the same as 1.2.0, but we have updated the set of binary wheels provided. Specifically we have added `aarch64` wheels for Python 3.7 that were missing in 1.2.0 and have updated the versions of `manylinux` used for the linux wheels in a manner consistent with NumPy and SciPy. We have also dropped `musllinux` wheels which were present for some architectures in 1.2.0. We may add them again in the future if they are adopted by NumPy and there is a demand for this architecture. ============================== PyWavelets 1.4.0 Release Notes ============================== We are very pleased to announce the release of PyWavelets 1.4. This release is a minor update to 1.3.0. It adds wheels for Python 3.11 and drops support for Python 3.7. There is one new utility function, `pywt.frequency2scale`, that can be used to determine CWT scale factors corresponding to a given (normalized) frequency. It is the inverse of the existing `pywt.scale2frequency`. |
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wiz
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654fce2a7a | py-photutils: does not support python 3.11 because of py-scikit-image | ||
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wiz
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319bdbaedf | py-gmpy: remove, replaced by py-gmpy2 | ||
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wiz
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3ac1139b4a |
py-mpmath: switch to py-gmpy2
Bump PKGREVISION. |
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wiz
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5b53843f48 | math/Makefile: + py-gmpy2 | ||
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wiz
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058ac1c04d |
math/py-gmpy2: import py-gmpy2-2.1.2
gmpy2 is an optimized, C-coded Python extension module that supports fast multiple-precision arithmetic. gmpy2 is based on the original gmpy module. gmpy2 adds support for correctly rounded multiple-precision real arithmetic (using the MPFR library) and complex arithmetic (using the MPC library). |
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wiz
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660d98e548 | py-quadprog: fix build with python 3.11 | ||
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adam
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eafe98549c |
py-pythran: updated to 0.12.0
0.12.0 Improve numpy expression computation speed Decent ICC support (fixing an issue from 2018!) Much faster C++ code generation Complete rework of constant folder Support C++-time evaluation of numpy.ndarray.ndim Improved omp declare reduction support Allow indexing of ndarray by integers of mixed types A lot of small pesty bug fixes in the C++ headers |
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adam
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f26b8907b0 |
octave: updated to 7.3.0
GNU Octave 7.3.0 This version is a bug fixing release: Improvements and fixes scanf: Don’t set error when reaching end of stream Fix duplicate names displayed with mixed @class/classdef classes canonicalize_file_name: Handle symlinks to UNC network shares canonicalize_file_name: Generalize check for mapped network drive fortran_vec: Fix instances of method chaining that may cause dangling pointer. Fix wrong color in PDF printout of some LaTeX strings unpack.m: Escape backslashes in paths on Windows canonicalize_file_name: Check root of potential mapped network drive nextpow2.m: Fix for input between 0.5 and 1 quad2d: Fix unintended complex conjugate return Make sure we don’t pass short 8.3 path to latex on Windows canonicalize_file_name: Trim trailing file separators from root of mapped network drive imformats.m: Fix isa function in return value pie3: Fix “Too many input” args error. Accept negative inputs to -2^63 for dec2bin and dec2hex Fix incorrect lambda outputs for lsqnonneg and pqpnonneg addtodate.m: Fix wrong month returned when subtracting a month from some end-of-month dates var.m: Fix some Inf and NaN inputs returning 0 instead of NaN var.m: Fix automatic broadcasting error for sparse and diagonal matrix inputs with vector weighting legend.m: Fix error with contour plot containing clabels dec2bin.m: Fix input validation glpk.m: Avoid using isfinite on potentially sparse input. var.m: Use bsxfun rather than broadcasting with vector weighting Fix out of bound indexing in in-place broadcasting operations GUI Respect confirmation when deleting files in file browser widget Build system / Tests io.tst: Add test case for scanf nextpow2.m: Add bug number tag to regression tests quad2d.m: Add BIST to cset b0e90ca8e679 Add test for number of methods with classdef in @folder Use Autoconf macro to find egrep executable. Documentation uitable.m: Fix example code Clarify number of processors returned by nproc with hyperthreading. Minor wording change to hashing documentation. lsqnonneg and pqpnonneg: Document undocumented outputs. pqpnonneg.m: Improve docstring readability. lsode: Make TeX and non-TeX docstrings agree. curl: Fix error in TeX docstring. Update text on function argument checking. schur: Update documentation. |
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pin
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dba39df320 |
math/kalker: update to 2.0.1
- Minor bug fixes |
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gdt
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d186b6a80e |
py37-reduce: Drop 37 from PYTHON_VERSIONS_ACCEPTED
Drop 37 from PYTHON_VERSIONS_ACCEPTED for all but py-backports.cached-property (which exists only for 37, and I'm guessing it will build fine and not cause trouble). This follows the new plan of "37 is all but removed, with the lang/python37 package remaining, but py37-foo are not built by default" compromise to avoid problems from the current state of massive py37-foo build failures while stopping short of outright removal. |
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adam
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317985d6a7 |
py-numexpr: updated to 2.8.4
Changes from 2.8.3 to 2.8.4 --------------------------- * Support for Python 3.11 has been added. * Thanks to Tobias Hangleiter for an improved accuracy complex `expm1` function. While it is 25 % slower, it is significantly more accurate for the real component over a range of values and matches NumPy outputs much more closely. * Thanks to Kirill Kouzoubov for a range of fixes to constants parsing that was resulting in duplicated constants of the same value. * Thanks to Mark Harfouche for noticing that we no longer need `numpy` version checks. `packaging` is no longer a requirement as a result. |
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adam
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44f45ec56f |
flann-lib: updated to 1.9.2
Version 1.9.2 * Removed redundant assignment * Removed unnecessary null checks before delete * Reverted PR 424 due to lack of portability * fscanf fix * Out of bounds check * Fixed MacOS build * Fixed build system with dummy.c hack * Fixed misleading indentation in util/any.h * Included datasets in repo * Correct typo in definition * Fix typos * CMakefile CUDA sources fix * Documentation fix * Scoping issue fix * Documentation fixes * Changed return value * Fixed CUDA crash - guarantee prealloc > 0 * Fixed wrong variable use * Fixed RNG initialization * Updated link to PDF |
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nros
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97bac52ed7 | pari23: update MASTER_SITES to the right directory | ||
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nros
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b5db27b02f | clisp-pari: fix build by depending on pari23 instead of pari, revbump | ||
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nros
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0b8cc0e958 | pari: blbump for pari 2.15.0 update | ||
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nros
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4ec0bc93fe |
Update math/pari to version 2.15.0
Listed in the TODO and the version in pkgsrc was 7 years old. Fix pkglint complaints. The changes below are only for 2.13 to 2.15. The commit message would be to big if all changes were included. Changes from changelog: Bug numbers refer to the BTS at http://pari.math.u-bordeaux.fr/Bugs/ Done for version 2.15.0 (released 19/09/2022): Fixed 1- slowdown in zeta (e.g. zeta(Pi) at \p500) 2- GC error in idealinv [#2258] 3- qfminim inefficiency (initial bound from non-LLL-reduced matrix) 4- mfshimura in weight 3/2 => oo loop 5- zetahurwitz(s, huge x) => overflow or very slow 6- matsolve([1,1,1/2; 1,0,1/2; 2,1,0], [-1;1;-1]) -> SEGV [#2261] 7- qfminim(Mat(1),,,2) -> precision error [#2262] 8- subst(p, v, t_SER) very slow if p contains many variables [#2264] 9- mfsymboleval for trivial path returned 0 instead of a vector of 0s when f has multiple embeddings [#2260] 10- 2^(1 + O(3^4)) -> type error 11- Zn_quad_roots(8,0,-1) to compute roots of x^2-1 mod 8 -> [4,[1,3]] (1 or 3 mod 4) instead of the expected [2,[1]] (1 mod 2) [#2265] 12- tan(1+10^20*I) -> overflow (same for cotan and psi) BA 13- Mod(2,3)^1000000000000000000001 -> Mod(-1,3) [#2266] 14- subst(O(y) + x, x, (1 - y + O(y^2))*x + O(x^2)) -> SEGV [#2267] 15- (Mod(0,3) + x) + O(x^2) -> x + O(x^2) [now Mod(1,3)*x + O(x^2)] 16- precision too low for units in mfgaloisprojrep 17- missing GC at the end of RgXn_inv 18- (-1)^(1/3) -> -1 instead of exp(log(-1)/3) 19- mfeisenstein(k, trivial characters mod N > 1) not handled correctly BA 20- missing GC in qfsolve 21- missing GC in nfeltval + better algorithm when valuation is huge 22- rnfidealup(, non-integral ideal) -> division by 0 23- memory leak in ellheight 24- memory leak in bnfinit 25- zeta(-2 + O(x)) => division by 0 26- nfeltdiv(nfinit(x^2+1), 0, 1+x/2) -> SEGV [#2277] 27- numerical instability in polinterpolate [#2278] 28- znchargauss(g,chi,0) -> oo loop 29- bnflog(bnr, ...) -> SEGV 30- elliptic functions: incorrect reduction of z/w1 mod [1,tau] => catastrophic cancellation 31- powcx(x, t_COMPLEX with 0 imaginary part) -> crash 32- nfsubfields(t_POL in other var than x,,1) -> SEGV 33- extra terms in power t_SER substitutions [#2281] f=1+4*t^2+36*t^4+O(t^6); g=q-4*q^3+14*q^5+O(q^7); subst(f,t,g) -> spurious extra term -400*q^6 34- k=bnfinit(quadpoly(-2923,a)); bnrclassfield(k,3) -> SEGV [#2280] BA 35- rnfdisc mishandled polynomials with denominators [#2284] BA 36- elltamagawa(ellinit([-1456/243,93184/19683])) -> wrong result 37- mfsearch would sometimes miss the trivial form 38- typo in allh [affects ECPP tunings] HC 39- mfisetaquo(mffrometaquo([1,12;193,12])) -> 0 40- polroots(1.E-47*t^6 + 1.E-47*t^5 + 4.E-46*t^4) -> bug in type [#2286] 41- ceil(quadgen(5)) -> 1 instead of 0 [#2288] 42- floor(Mod(0,3)*quadgen(5)) -> crash 43- padicappr(x^2+1, 1/3+O(3)) -> missing valuation and type checks 44- padicappr(x^2+25,5+O(5^2)) -> [O(5),O(5)] instead of [2*5+O(5^2),3*5+O(5^2)] 45- wrong ispower(t_RFRAC) and issquare(t_RFRAC, &z) [#2289] 46- slow series substitution if valuation huge f=t^50000+O(t^50001); g=q*Ser(vector(50000,i,1),q); h=subst(f,t,g) 47- 1+O(x)==O(x) 48- cmp() would use possibly uninitialized bits in t_POL codewords BA 49- qfauto([[1,0;0,1],[0,0;1,0]]) -> SEGV 50- bnfsunit(...)[4] (the S-regulator) did not correspond to its definition in the documentation [ was using log(p) instead of log(Norm P)) for P in S above p ] BA 51- rnfdisc could return corrupted result 52- quadtofp suffered from catastrophic cancellation [#2298] z=66992092050551637663438906713182313772 -47370562574818466708936539960450008968*quadgen(8); z*1. -> 0.75 BA 53- concat(List([1])[1..0]) ->SEGV (instead of error) [#2299] BA 54- List([1])[1..0]==List() -> 0 instead of 1 55- ZX_squff(T) did not follow its specification if T(0) = 0 56- (-1)^(-1/2) -> I instead of -I 57- lfuntheta inaccurate in large weight [#2305] 58- GC error in ZX_Uspensky(, flag = 0) BA 59- ellisomat(ell/nf not integral) -> oo-loop or wrong result BA 60- (f(~v)=v[1]=1);(g(v) = f(~v)); my(V=[0]);g(V);V -> [1] instead of [0] due to missing copy on write [#2304] 61- hypergeom([1/12,1/12],2/3,3) -> wrong result (incorrect limiting case of transformation formula) 62- overflow in mulu_interval(,ULONG_MAX) [#2309] 63- ellE(1) -> domain error [#2312] 64- log1p(-1 + 10^-10) -> oo time 65- bernvec entries were wrong from B_{2*4064} on [#2311] 66- plotrecthraw for multi-curves 67- RgXn_powu(,,1) wrong result [#2314] 68- erfc incorrect on negative imaginary axis [#2315] 69- mfgalpoistype bug for dihedral types (when conductor at oo is not stable under Galois) [#2293] BA 70- [32bit] forfactored(n=223092868, 223092871, ) -> SEGV [#2318] 71- Fp_issquare(0, p) would return 0 72- For z=x+wy a t_QUAD, z.pol returned the modulus z.mod instead of the t_POL x+'w*y 73- allow eulerianpol(0) (= 1) 74- allow polylog(0,x) (was broken when eulerianpol was introduced) BA 75- concat(t_LIST,t_LIST) was leaking memory 76- missing type checks in ellchangepoint (SEGV) 77- polsturm(-5500*x^4+440*x^3+21780*x^2-9680*x-29040,[-oo,-4])->corruption 78- ellheight(E,,Q) -> SEGV 79- besselj(80,66) -> oo loop 80- lfun(1, 0.0) "normalizing a series with a 0 leading term" [#2329] 81- (0. + O(x) == 1) returned 'true' 82- lfun(1, 0., 1) -> division by 0 83- fix lfuncost when root number is unknown (more a_n are needed) 84- idealismaximal(nfinit(x),Mat(2)) -> 0 [#2333] 85- O(29^(-1)) == 1 was FALSE (same for -1) 86- Mod(0, 2*x^0) == 1 was FALSE (same for -1) BA 87- [X11] resizing a window could keep traces of previous drawing BA 88- x->x+0x1 was not displayed correctly 89- bnfinit(Q) was not using current precision [#2335] 90- lfuncreate(x^2 + 1/2) -> internal error. Allow rational coefficients. 91- polresultant(t_POL with t_RFRAC coefs,...) -> internal errors 92- znchardecompose(znstar(2,1),[],2) -> SEGV [#2339] 93- genus2red(150*x^6+180*x^5-270*x^4+2040*x^3-1350*x^2+3060*x+270) -> internal bug [#2331] 94- missing roots in nfroots(t_POL,) [#2345] 95- factorpadic: ensure leading coefs are powers of p [#2352] 96- nfsnf: wrong results [#2353] XR 97- rare SEGV in nfdisc. [#2356] BA 98- factor((Mod(1,2)*((t^2+1)*x^4+(t^4+1)*x^2+1))) -> division by 0 99- internal type errors in mfsymboleval [#2360] 100- incorrect chargalois for trivial group [#2341] 101- minpoly(Mod(1/(x-(t+1))*Mod(1,2),(t+1)*x^2+t*x+1)) -> error [#2363] BA 102- factor(Mod(1,2)*x^5+a*x^3) -> div by 0 AP 103- nfgrunwaldwang: fix infinite loop [#2343] 104- ti=thueinit(3*x^3 + 5*x^2 - 14*x + 54,1); thue(ti,1) -> error [#2365] 105- algdep(t_POLMOD x) -> x.mod instead of correct result 106- bnrinit(,,,cycmod) failed to delete elementary divisors equal to 1 BA 107- bnrclassfield: incorrect result when fundamental units are large, e.g. bnrclassfield(bnfinit(nfsplitting(a^3-a^2-202*a-3080),1),2) [#2371] 108- M8=mfinit([8,5/2]); mfatkininit(M8,8)[1] was 0 and shouldn't be 109- polylogmult instability default(realprecision,366);a=(1+sqrt(5))/2;w=(1+sqrt(-3))/2; polylogmult([1,1,1,1],[1/a,a,1,w]) -> error 110- valuation(x*(y^2-1), y+1) -> oo loop [#2381] 111- round(t_FRAC, &e): e was always -oo 112- FpM_center_inplace would crash for p = 3 [#2387] BA 113- [gp interpreter] fix memory leak in pop_lex 114- numerator(1/x+1/y, 'x) -> x*y 115- colors = "no" (or "") handled incorrectly [#2402] 116- thue(thueinit(x^3-3*x^2+1,1), 2187) -> domain error in mplog [#2397] 117- Bessel function of huge order -> oo loop [e.g. besselj(220, 112)] 118- elltwist(E,) would ignore E's real precision Added HC 1- new GP function eulerreal BA 2- fplll: fast, dpe and heuristic variants 3- dirpowerssum: allow a completely multiplicative function 4- [libpari] atanhuu, atanhui, powcx, powcx_prec, cx_approx0 5- new GP function lfunparams (initial implementation P. Molin) 6- [libpari] row_Q_primpart BA 7- [libpari] RgXQ_trace, RgX_chinese_coprime, RgXQV_factorback 8- [libpari] FpM_intersect_i, Flm_intersect_i HC 9- add optional argument to ramanujantau + parallelize code HC 10- new GP functions bessljzero, besselyzero BA 11- [libpari] Fle_ellweilpairing, Fle_elltatepairing, Flj_to_Fle Fl_ellptors BA 12- [libpari] ZC_divexactu, ZM_divexactu HC 13- allow hypergeom(N, D, t_SER) 14- [libpari] qfbsqr, qfbcomp, qfbpow, qfbpowraw, qfbsqr_i, qfbcomp_i, qfbpow_i, qfbpow, qfbpowraw, qfr3_compraw, qfr5_compraw 15- general composition of binary quadratic forms (in different orders) BA 16- New GP functions ellrank, ellrankinit : implement 2-descent on elliptic curve following a GP script by Denis Simon. BA 17- [libpari] RgXY_derivx, RgX_recip_i 18- [libpari] RgC_RgV_mulrealsym, RgM_to_RgXV_reverse BA 19- New GP function ellsaturation 20- [libpari] ZX_Z_eval BA 21- [libpari] elltors_psylow 22- ellinit([j]); no need to use ellfromj 23- ideallist(nf, negative bound) to return ideals of norm |bound| (in factored form) 24- rnfconductor(bnf,pol,flag): add flag=2 to only return the conductor and its factorization (which comes for free) HC 25- New GP functions nflist, nfresolvent BA 26- [libpari] Hermite_bound 27- substvec: support t_VEC replacement values BA 28- New GP function ell2cover BA 29- nfsplitting: flag to get the embedding BA 30- New GP function galoissplittinginit HC 31- lambertw(y): support all values y > -1/e [#1472] HC 32- lambertw: add optional 'branch' argument; support and complex, p-adic and power series inputs BA 33- [libpari] ZXC_to_FlxC, ZXM_to_FlxM BA 34- [libpari] New function families F3v, F3m BA 35- New GP function setdebug 36- allow shortcut \g n feat for setdebug("feat", n) 37- New GP function poltomonic [#2200] 38- in GPRC, support default(key,val) and setdebug(dom,val) 39- New GP function polsubcyclofast 40- [libpari] prV_primes, ideals_by_norm, nfV_to_scalar_or_alg, quadpoly_i 41- new bit in nfinit flag: don't perform LLL on nf.zk BA 42- new flag value in nfisincl 43- [libpari] hclassno6u_from_cache, uhclassnoF_fact, hclassnoF_fact, vandermondeinverseinit, vandermondeinverse, trans_evalgen, sunits_mod_units, Qp_exp_prec BA 44- [libpari] RgXQ_minpoly 45- [libpari] quadclassnos, quadclassnoF, unegquadclassnoF, uposquadclassnoF, coredisc2_fact, coredisc2u_fact, uquadclassnoF_fact quadclassnoF_fact, Z_issquarefree_fact 46- new GP functions quadunitnorm, quadunitindex LGr 47- allow endpoints in solve() to by +oo or -oo 48- allow Vec(t_STR, n) and Vecsmall(t_STR, n) 49- new GP function: harmonic 50- allow digits(integral t_PADIC) 51- new GP function qfbcornacchia 52- [libpari] gc_all BA 53- [libpari] Zp_inv, Zp_invlift, Zp_div, Zp_log, Zp_exp BA 54- [libpari] FpXn_div, Flxn_div, RgXn_div, RgXn_div_i, FpXQXn_div, F2xn_div 55- [libpari] maxomegau, maxomegaoddu, ZV_snf_rank, ZV_snf_rank_u, zv_snf_rank, F3c_to_ZC, F3c_to_mod, F3m_to_mod, ZX_unscale_divpow, ZX_affine 56- new GP function snfrank HC 57- allow lngamma(t_PADIC of negative valuation) 58- file LICENSE (for Software Heritage archiving) BA 59- [libpari] RgXV_prod BA 60- new GP function serdiffdep 61- new module for hypergeometric motives, see ??hgm. GP functions hgmalpha hgmbydegree hgmcyclo hgminit hgmtwist hgmcoef hgmeulerfactor hgmissymmetrical lfunhgm hgmcoefs hgmgamma hgmparams BA 62- new GP function lfuneuler TF 63- new GP functions subcyclohminus, subcycloiwasawa, subcyclopclgp 64- new GP function bnrcompositum 65- [libpari] gdivgu, gdivgunextu, divrunextu, gmulgu, gmulug 66- [libpari] Zp_log, Zp_exp 67- new GP function intnumosc, sumnumsidi BA 68- [x86_64,arm64] AVX,NEON support for hyperellratpoints BA 69- [libpari functions ZX_digits, ZXV_ZX_fromdigits NM 70- new GP function elltrace BA 71- [libpari] FpXQXV_red, FpXQXT_red BA 72- [libpari] ZpXQX_ZpXQXQ_liftroot, ZqX_ZqXQ_liftroot 73- [libpari] ZV_snfclean 74- allow bnrchar to construct a Dirichlet character (with a znstar input) 75- new GP functions nfeltissquare, nfeltispower BA 76- [libpari] FlxqX_nbfact_by_degree BA 77- [libpari] RgXY_cxevalx 78- allow f*g and f^n for qfbcomp/qfbpow also for extended (real) forms 79- [libpari] qfbpows BA 80- [libpari] FlxM_to_FlxXV, FlxXC_sub BA 81- [libpari] FlxqXC_FlxqXQ_eval, FlxqXC_FlxqXQV_eval BA 82- new GP function qfminimize BA 83- new GP functions hyperelldisc, hyperellminimalmodel, hyperellminimaldisc, hyperellred 84- new GP function setdelta BA 85- [libpari] RgX_homogenous_evalpow, QXQX_homogenous_evalpow BA 86- [libpari] FpX_roots_mult BA 87- [libpari] RgX_affine HC 88- new GP function lerchphi, lerchzeta BA 89- new GP function hyperellisoncurve BA 90- [libpari] nfM_ker 91- [libpari] Qp_zeta BA 92- [libpari] RgX_mul2n 93- [libpari] rfrac_to_ser_i 94- [libpari] FlxC_FlxqV_eval_pre, FlxC_Flxq_eval_pre, Flx_FlxqV_eval_pre, Flx_Flxq_eval_pre, Flx_Frobenius_pre, Flx_div_pre, Flx_divrem_pre, Flx_extgcd_pre, Flx_gcd_pre, Flx_get_red_pre, Flx_halfgcd_pre, Flx_mul_pre, Flx_oneroot_pre, Flx_oneroot_split_pre, Flx_rem_pre, Flx_roots_pre, Flx_sqr_pre, Flxq_div_pre, Flxq_inv_pre, Flxq_invsafe_pre, Flxq_mul_pre, Flxq_powers_pre, Flxq_powu_pre, Flxq_sqr_pre, Flx_powu_pre, Flxn_div_pre, Flxn_mul_pre, Flxn_sqr_pre, FlxqX_fromNewton_pre, FlxqX_Flxq_mul_pre, FlxqX_Flxq_mul_to_monic_pre, FlxqX_FlxqXQV_eval_pre, FlxY_FlxqV_evalx_pre, FlxY_Flxq_evalx_pre, FlxqX_Newton_pre, FlxqX_get_red_pre, FlxqX_invBarrett_pre, FlxqX_powu_pre, FlxqXn_mul_pre, FlxqXn_sqr_pre, FlxqXn_inv_pre, FlxqXn_expint_pre, FlxY_eval_powers_pre, FlxY_evalx_powers_pre, FlxY_evalx_powers_pre, FlxqX_divrem_pre, FlxqXQ_inv_pre, FlxqXQ_invsafe_pre, FlxqXQ_sqr_pre, FlxqX_rem_pre, FlxqX_sqr_pre, FlxqXQ_pow_pre, FlxqXC_FlxqXQV_eval_pre, FlxqXQ_div_pre, FlxqXQ_mul_pre, FlxqX_halfgcd_pre, FlxqX_mul_pre, FlxqX_extgcd_pre, FlxqXQ_powers_pre, FlxqXQ_powu_pre, FlxqX_normalize_pre, FlxqX_red_pre, Kronecker_to_FlxqX_pre, Flx_dotproduct_pre, FlxqX_div_pre, FlxY_Flxq_evalx_pre, FlxqXC_FlxqXQV_eval_pre, Flx_is_smooth_pre, Flxq_pow_pre, Flxq_pow_init_pre, Flxq_pow_table_pre, Flx_matFrobenius_pre, FlxqV_dotproduct_pre, FlxqX_FlxqXQ_eval_pre, Flxq_auttrace_pre, Flxq_minpoly_pre, Flxq_lroot_fast_pre, Flxq_lroot_pre Flxq_matrix_pow_pre, Flx_ddf_pre, Flx_factor_squarefree_pre, Flx_nbfact_pre, Flx_nbfact_Frobenius_pre, Flx_resultant_pre, Flxq_autpow_pre, FlxqX_gcd_pre, FlxY_evalx_pre, FlxqXQ_autsum_pre, FlxqXQ_minpoly_pre, FlxqXQ_autpow_pre, FlxqXQ_auttrace_pre, FlxqX_Frobenius_pre, FlxqX_factor_squarefree_pre, FlxqE_weilpairing_pre TF 95- new GP function factormodcyclo TF 96- new libpari functions FpX_factcyclo, Flx_factcyclo 97- new libpari functions ZV_sort_shallow, ZV_sort_uniq_shallow, tridiv_boundu BA 98- rnfabelianconjgen 99- new libpari functions abmap_kernel, abmap_subgroup_image, ZV_ZV_mod, ZM_ZV_mod 100- bnr_char_sanitize, bnr_subgroup_sanitize TF 101- GP function znsubgroupgenerators 102- [libpari] RgV_is_prV 103- improve idealfactorback [using ideamulpowprime] Changed HC 1- faster implementation of eulervec + cache result 2- sumnummonieninit(,1): faster algorithm (complex step) 3- atanh(rational) now uses binary splitting BA 4- FqV_to_FlxV, FqC_to_FlxC, FqM_to_FlxM: replaced by ZXC_to_FlxC, ZXM_to_FlxM 5- FpM_intersect and Flm_intersect now guaranteed to return an Fp-basis; use FpM_intersect_i if you only need a generating set 6- ZXX_to_Kronecker -> RgXX_to_Kronecker, ZXX_to_Kronecker_spec -> RgXX_to_Kronecker_spec 7- [libpari] nbessel -> ybessel 8- faster implementation of mfinit and mfbasis in weight 1 9- ZabM_ker: replace final exact check by probabilistic check modulo a 63-bit prime 10- [libpari] ZC_u_divexact -> ZC_divexactu 11- unify real and imaginary binary quadratic forms, include discriminant types t_QFI and t_QFR are replaced by t_QFB 12- allow Qfb([a,b,c]) and Vec(t_QFB) 13- qfbredsl2(q, S): change format of S: was [D,isD], is now isD BA 14- [libpari] gp_read_stream now return NULL when EOF is reached (was gnil) 15- elltwist now returns an ellinit, and accepts the same input formats as ellinit ([a1,a2,a3,a4,a6], [a4,a6], Cremona label) 16- gen_search / vecvecsmall_search: remove flag; the result is now positive if the element is found else -i if element should be inserted at position i. 17- allow t_COL of objects in gconcat1 / shallowconcat1 18- [libpari] Z_smoothen now uses (and returns) t_VEC arguments. Use Z_lsmoothen to input small primes as a t_VECSMALL. 19- poliscyclo: replace Bradford-Davenport's Graeffe method by their invphi algorithm (much faster) BA 20- [libpari] QXX_QXQ_eval renamed to QXY_QXQ_evalx 21- [libpari] ZX_Zp_root(f,a,p,): assume 0 <= a < p BA 22- [libpari] gen_factorback now take an extra parameter one. 23- [libpari] mplambertx_logx, mplambertX, mplambertxlogx_x 24- [libpari] absZ_factor_limit_strict no longer guarantees that q is composite: this is useless for applications and possibly expensive 25- default(debugfiles,) is now obsolete, use setdebug("io",) 26- [libpari] quadclassno now has a second argument (to recover the attached fundamental discriminant) 27- faster qfbclassno for non fundamental positive discriminants (use quadunitindex) 28- removed appa.tex from users.dvi; inline the text in INSTALL.tex 29- divrunu, divgunu: use a single division in all cases (faster even if denominator has 2 words) 30- allow random(negative integer N) -> a random integer in [-n,n], n=|N|-1. 31- allow sqrtint and sqrtnint for nonnegative real number argument 32- allow logint for positive real number argument 33- improve gamma and lngamma for t_FRAC inputs 34- renamed normalize -> normalizeser 35- nfinit/nfdisc/nfbasis: use lazy factorization by default [#2326] 36- in idealtyp(ideal, fa), allow setting fa to NULL BA 37- system now return the shell return value. 38- allow valuation(x) when x is a t_PADIC, a t_POL or a t_SER 39- libpari function precision() now always return a 'prec' (integer > 2). It used to return 2 for real 0 of non-negative exponent. 40- grndtoi(GEN x, long *e): allow setting e = NULL BA 41- [libpari] pari_thread_start: do not allow threads started this way to launch more threads. BA 42- genus2red: 3rd component is now a pair [P,Q] such that y^2+Q*y=P is minimal everywhere. 43- faster implementation of binomial Removed 1- [libpari] obsolete functions qfi, qfr, qfi_1, qfr_1, redreal, redrealnod, rhoreal, rhorealnod, qfrcomp, qfrcompraw, qfrsqr, qfrsqrraw, qfisqrraw, qficompraw, qfipowraw, qfipow, qficomp, qfisqr, redimag 2- [libpari] obsolete types t_QFI, t_QFR 3- [libpari] nfinitall is now obsolete; use nfinit with the same arguments 4- [libpari] order is now obsolete; use znorder |
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nros
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bdefdfc824 | pari: fix work directory referance to gzip tool | ||
alnsn
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d8932a6f52 |
Update math/sollya to version 8.0.
Changes from version 7.0 to 8.0:
================================
Changes of syntax and output:
* Hexadecimal constants ending on '+' or '-' (e.g., 0x123p-) now
provoke a syntax error (as it always should have).
* The match construct on error now matches (it used to return
error).
* In certain cases, procedures could not be applied to an empty set
of arguments because a syntax error occurred before. This is now
possible.
* The meaning and use of infinities and signed zeros in intervals
has been changed (see documentation for details).
* Input and output of decimal constants is now fully exact in
rationalmode. In all other instances, a warning message is now
produced when an internal constant gets printed in decimal and a
rounding occurs.
Critical bug fixes:
* Making Sollya compile again with recent versions of fplll (at
least on the Linux side).
Improvements in internal handling:
* Improved performance on manipulation of polynomials.
Major bug fixes:
* Patched a bug in interval erfc.
* Patched a bug preventing match to work on unary minus.
Major new functionalities:
* The interpolate command allows for polynomial interpolation with
and without error (see documentation for details).
* The bezout command allows for computation of a gcd along with
matching cofactors (see documentation for details).
Minor new functionalities:
* The externaldata command now allows generic external library
symbols to be bound to Sollya objects (see documentation for
details).
* Improvements on use of the L'Hopital rule for function
evaluations.
* When started as an interactive tool or as a library, Sollya now
binds the executable's 0th argument to the Sollya identifier
__program_name.
* In situations when the user wishes to provide the minimax with
real coefficients to fpminimax, it is now possible to give a list
of coefficients instead of the expression of the real minimax (see
documentation for details).
* The free mathematical variable can now be unbound with the rename
command (see documentation for details).
* The bind command now allows for procedures with an arbitrary
number of arguments (see documentation for details).
* The char *sollya_lib_get_help_text(char *topic) function now
allows for access to the help text of a certain topic.
Others:
* In certain circumstances, the printing of a list may have had
quadratic complexity in the past. This has been corrected.
* If the compiler supports the -flto flag; this option is disabled
by default though. To enable LTO compilation, use
--enable-lto-compilation. On certain systems the -flto flag is
supported by the compiler but LTO compilation fails. In this case,
it is recommended not to enable LTO compilation.
* dirtyfindzeros used to include in the list of zeros any point
where the expression given as input evaluated to NaN. Such points
are now included only when there is a real suspicion that it could
be a true zero of the expression.
* externalprocedure, externalfunction and externaldata entries can
have cross-dependencies for their symbols. The tool now makes sure
all symbols are unloaded in the precise inverse order of their
loading, to allow for such cross-dependencies.
* chebyshevform command can now be used out of execute() statements.
* remez command now tries to recognize the situation when the
optimal error function is identically 0.
* configure now allows for cross-compilation.
Deprecated functionalities:
* Deprecated readxml and printxml.
* Deprecated the proof generation feature of the infnorm command.
* Deprecated end-elliptic lists ending with a number as a format
list in fpminimax.
And many bugs fixed.
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alnsn
|
ce0302b84f | Update website. | ||
|
wiz
|
dbe1a54e9d | *: bump PKGREVISION for libunistring shlib major bump | ||
|
wiz
|
530502eac9 | *: bump PKGREVISION for libunistring shlib major bump | ||
|
adam
|
82498201fb | volk: mark as not for Python 2.7 | ||
|
adam
|
74f739ef85 |
py-scipy: updated to 1.9.3
Issues closed for 1.9.3
scipy.interpolate.UnivariateSpline segfault
BUG: multivariate_normal returns a pdf for values outside its...
BUG: stats: inconsistency in docs and behavior of gmean and hmean
running scipy.interpolate.tests.test_fitpack::test_bisplev_integer_overflow...
test_bisplev_integer_overflow: Segmentation fault (core dumped)
Bug: setting iprint=0 hides all output from fmin_l_bfgs_b, but...
\`scipy.stats.mood\` does not correct for ties
ks_2samp throws \`RuntimeWarning: overflow encountered in double_scalars\`
\`shgo\` error since scipy 1.8.0.dev0+1529.803e52d
Input data validation for RectSphereBivariateSpline
BUG: binom.pmf - RuntimeWarning: divide by zero
BUG: scipy.optimize.minimize: Powell's method function evaluated...
BUG: lombscargle fails if argument is a view
BUG: Possible bug when using winsorize on pandas data instead...
BUG: stats.ttest_ind returns wrong p-values with permutations
odr.Model default meta value fails with __getattr__
BUG: Error in error message for incorrect sample dimension in...
BUG: dimension of isuppz in syevr is mistranslated
BUG: \`KDTree\`'s optional argument \`eps\` seems to have no...
dtype not preserved with operations on sparse arrays
BUG: \`stats.fit\` on \`boltzmann\` expects \`bound\` for \`lambda\`,...
BUG: Small oversight in sparse.linalg.lsmr?
BUG: Build failure due to problems with shebang line in cythoner.py
BUG: stats.rayleigh.fit: returns \`loc\` that is inconsistent...
BUG? Incorrect branch in \`LAMV\` / \`_specfunc.lamv\`
DOC: keepdims in stats.mode is incorrectly documented
Pull requests for 1.9.3
BUG: multivariate_normal returns a pdf for values outside its...
Bug: setting iprint=0 hides all output from fmin_l_bfgs_b, but...
BUG: stats: Reformulate loggamma._rvs to handle c << 1.
BUG: fix out-of-bound evaluations in optimize.minimize, powell...
BUG: fix powell evaluated outside limits
BUG: fix stats.rv_histogram for non-uniform bins
stats.mood: correct for when ties are present
BUG: fix a crash in \`fpknot\`
MAINT: stats: fix _contains_nan on Pandas Series
Fix ttest permutations
MAINT: fix SHGO extra arguments
BUG: Fix error in error message for incorrect sample dimension...
MAINT: stats.ks_2samp: always emit warning when exact method...
BUG: fix syevr series segfault by explicitly specifying operator...
BUG: optimize: Fix differential_evolution error message.
FIX: \`odr.Model\` error with default \`meta\` value
FIX: stats: ignore divide-by-zero warnings from Boost binom impl
MAINT: stats.vonmises: wrap rvs to -pi, pi interval
BUG: eps param no effect fixed
MAINT: Ensure Pythran input for lombscargle are contiguous
Detect integer overflow in bivariate splines in fitpackmodule.c,...
BUG: sparse: Fix indexing sparse matrix with empty index arguments.
FIX: spurious divide error with \`gmean\`
BUG: fix mutable data types as default arguments in \`ord.{Data,RealData}\`
MAINT: stats.boltzmann: correct _shape_info typo
BUG: interpolate: sanity check x and y in make_interp_spline(x,...
MAINT: avoid \`func_data\`, it conflicts with system header on...
BUG: interpolate: work array sizes for RectSphereBivariateSpline
BUG: linalg: Fix the XSLOW test test_sgesdd_lwork_bug_workaround()
MAINT: fix small LSMR problem
MAINT: stats.rayleigh: enforce constraint on location
FIX: special: use intended branching for \`lamv\` implementation
MAINT: stats.rv_discrete.pmf: should be zero at non-integer argument
REL: Prep for SciPy 1.9.3
BUG: special: Fix two XSLOW test failures.
MAINT: update meson.build to make it work on IBM i system
BLD: fix issue with incomplete threads dependency handling
Keepdims incorrectly documneted fix
MAINT: Handle numpy's deprecation of accepting out-of-bound integers.
BLD: fix invalid shebang for build helper script
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||
|
adam
|
720b13de72 |
octave: updated to 7.2.0
Summary of bugs fixed for version 7.2.0 (2022-07-28):
----------------------------------------------------
For
Improvements and fixes
- Avoid out-of-bounds indexing when checking for broadcastable inplace operators
- `hdl2struct.m`: Fix saving of `uibuttongroups`
- Fix `ls` with glob patterns on Windows
- `pkg.m`: Create directory before saving file
- `nchoosek.m`: Fix freeze-up for certain integer inputs
- `nchoosek.m`: Restore fast path code for floating point inputs
- `betainc.m`: Use sophisticated technique for calculating exponents to avoid inaccuracies
- `ls.m`: Fix handling of `\` on UNIX platforms
- `findobj.m`: Fix input validation of graphics handles
- `newplot.m`: Backed out changeset fdd58773ac02
- `__print_parse_opts__.m`: Initialize variables in all cases for print warnings
- `__wglob__`: Correctly handle `.` and `..` in patterns on Windows
- `datenum.m`: Correctly handle arrays with leading singleton dimensions
- Stop incorrect error when `reset()` called on `uimenu` handle
- Emit more informative error message on empty input when setting axis limits
- `msgbox.m`: Allow "custom" `cdata` for icon
- Fix memory leak with nested functions and anonymous functions
- `__wglob__`: Retain trailing file separator on Windows
- `pkg`: Avoid error when unlinking non-existent files
- `mkoctfile.m`: Trim whitespace (newline) around system output.
- `subplot.m`: Avoid error when mixing `rcn` and `"position"` calling form
- `plot`: Deprecate using numbers to select line colors
- Don't shut down interpreter immediately on `execute`
- `isprime.m` and `__isprimelarge__.cc`: Minor performance tweaks.
- `__wglob__`: Handle patterns with UNC paths on Windows
- Change wording of error message when using a variable as function
- `inputParser.m`: Adapt for interpreter changes regarding number of output arguments
- Store token ID, not keyword ID when parsing keywords
- `canonicalize_file_name`: Do not translate mapped network drive to UNC path
- `inputParser`: Correctly handle cell default values for optional parameters
- `factor.m`: Performance tweak to avoid division in certain cases.
- Fix regression with `\color[rgb]` TeX pattern
- `regexp`: Check pattern length before accessing it
- `pkg.m`: Create `PREFIX` and `ARCHPREFIX` directories
- `pkg`: Replace `OCTAVE_HOME` in `PREFIX` and `ARCHPREFIX` independently
- `randmtzig.cc`: Add missing `#include <ctime>`
- `pkg`: Fix formatting of `copyfile` message
- `pkg`: Escape special characters in `OCTAVE_HOME` for `regexprep`
GUI
- Fix removing trailing spaces on closing a modified file
- Replace use of deprecated `QDesktopWidget` in GUI.
- Fix display in Variable Editor when `fixed_point_format` is on
- Fix file length when saving shorter content in editor
Build system / Tests
- `addpref.m`: Recode test to work with multiple running instances of Octave.
- Don't leak build directories in installed directories
- Import `hash-buffer` modules from gnulib
- Remove `.dirstamp` files from `test/` directory with `maintainer-clean` target.
- Add tests for `__FILE__` and `__LINE__`
Documentation
- `datestr.m`: Fix minor typo.
- `ls.m`: Improve wording in docstring
- `dir.m`: Clarify wildcard behavior on Windows in docstring
- `memory.m`: Redo documentation to be formatted correctly in Info output.
- Document contracted `format` arguments
- `humps.m`: Fix mismatch between TeX docstring and non-TeX docstring.
- `warning_ids.m`: Add new warning ID `"Octave:deprecated-option"`.
- `primes.m`: Move code examples before math theory.
- `primes.m`: Mark variables in docstring with `@var{}` macro.
- Rewrite section on automatic type conversions
- `subsasgn`: Correct example code
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adam
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7805ada73d |
py-numpy: updated to 1.23.4
1.23.4 BUG: Add ``__array_api_version__`` to ``numpy.array_api`` namespace MAINT: update sde toolkit to 9.0, fix download link BLD: use macos-11 image on azure, macos-1015 is deprecated MAINT: random: remove ``get_info`` from "extending with Cython"... BUG: Fix complex vector dot with more than NPY_CBLAS_CHUNK elements REV: Loosen ``lookfor``'s import try/except again TYP,ENH: Mark ``numpy.typing`` protocols as runtime checkable TYP,MAINT: Change more overloads to play nice with pyright TST,TYP: Bump mypy to 0.981 DOC: Update delimiter param description. BUG: Memory leaks in numpy.nested_iters REL: Prepare for the NumPy 1.23.4 release. TST: Fix failing aarch64 wheel builds. |
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nros
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824e7b55a0 | openfst: fix build by setting GCC_REQD to 8 since it needs <charconv> | ||
taca
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0db8afb615 | Bump revision by default Ruby's version change. | ||
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adam
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7b3202fcc8 |
py-scipy: updated to 1.9.2
Issues closed for 1.9.2 BUG: 1.9.0rc1: \`OptimizeResult\` not populated when \`optimize.milp\`... BUG: \`sparse.hstack\` returns incorrect result when the stack... BUG: optimize.minimize backwards compatability in scipy 1.9 BUG: using msvc + meson to build scipy --> cl cannot be used... BUG: error from \`scipy.stats.mode\` with \`NaN\`s, \`axis !=... BUG: scipy 1.7.3 wheels on PyPI require numpy<1.23 in contradiction... BUG: ncf_gen::ppf(..) causes segfault Pearson3 PPF does not function properly with negative skew. BUG: OSX-64 Test failure test_ppf_against_tables getting NaN Pull requests for 1.9.2 FIX: Updated dtype resolution in \`_stack_along_minor_axis\` FIX: milp: return feasible solutions if available on time out ENH: cibuildwheel infrastructure MAINT: minimize, restore squeezed ((1.0)) addresses 16898 REL: prep for SciPy 1.9.2 DOC: update version switcher for 1.9.1 and pin theme to 0.9 MAINT: cast \`linear_sum_assignment\` to PyCFunction BLD: use compiler flags in a more portable way MAINT: stats.mode: fix bug with \`axis!=1\`, \`nan_policy='omit'\`,... MAINT: fix NumPy upper bound BLD: fix usage of \`get_install_data\`, which defaults to purelib DOC: Update numpy supported versions for 1.9.2 BLD: fixes for building with MSVC and Intel Fortran Rudimentary test for manylinux_aarch64 with cibuildwheel BLD: make MKL detection a little more robust, add notes on TODOs CI: Update cibuildwheel to 2.10.1 MAINT: stats.pearson3: fix ppf for negative skew BUG: Fix numerical precision error of \`truncnorm.logcdf\` when... FIX: ensure a hold on GIL before raising warnings/errors TST: stats.studentized_range: fix incorrect test MAINT: pyproject.toml: Update build system requirements MAINT: 1.9.2 backports |
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taca
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ee718a9666 | Remove lines for Ruby 2.6. | ||
he
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f7181b46ab |
math/R: use ../../mk/atomic64.mk for 64-bit atomics.
R itself doesn't need this, but some modules might, e.g. R-s2. Bump PKGREVISION. |
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adam
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c4c772b20a |
py-scipy: updated to 1.9.1
SciPy 1.9.1 is a bug-fix release with no new features compared to 1.9.0. Notably, some important meson build fixes are included. SciPy 1.9.0 is the culmination of 6 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s). Our development attention will now shift to bug-fix releases on the 1.9.x branch, and on adding new features on the main branch. This release requires Python 3.8-3.11 and NumPy 1.18.5 or greater. For running on PyPy, PyPy3 6.0+ is required. |
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adam
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edd7073c07 |
volk: updated to 2.5.2
Changes 2.5.2 Android - Add Android CI - Fix armeabi-v7a on Android CI - Update all test jobs to more recent actions volk_8u_x4_conv_k7_r2_8u - Add NEON implementation neonspiral via sse2neon.h Fixes - Fix out-of-bounds reads - Fix broken neon kernels - Fix float to int conversion CMake - Suppress superfluous warning - Fix Python install path calculation and documentation cpu_features - Update submodule pointer VOLK 3.0 release preparations - Use SPDX license identifiers everywhere - Re-arrange files in top-level folder - Update Doxygen and all Doxygen related tasks into docs |
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markd
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16a5a56a6e |
KDE Gear update to 22.08.1
16 months of development |
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pin
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5e76bffddd | Add apecrunch | ||
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pin
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e9e3e210e3 |
math/apecrunch: import pkg
ApeCrunch aims to be a fast, user-friendly Rust/TUI calculator port of the popular SpeedCrunch project. While not a copy-paste port, there are plans to implement every function SpeedCrunch supports plus the addition of much more. |
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he
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b27d6e0702 |
math/z3: make this build on NetBSD/macppc 9.99.99.
Fixes two issues: * <immintrin.h> is only available on amd64 and i386 (I think...) * The scanner depends on signed chars a number of places. Sprinkle "signed" a minimal set of places to make this explicit, to deal with powerpc where "char" == "unsigned char". Bump PKGREVISION. |