Commit graph

3507 commits

Author SHA1 Message Date
markd
ab68a3fbb8 Update to KDE SC 4.14.3 2014-11-13 19:19:06 +00:00
adam
8e3b70e314 Revbump after updating boost 2014-11-07 19:39:24 +00:00
cheusov
09a45edfa1 Fix for build failure seen on Linux/gcc-4.7.
We have to enable -msse2 before checking for xmmintrin.h.
2014-11-02 23:09:31 +00:00
wen
a039059dd0 Update to 0.9
Upstream changes:
Version 0.9

2013-12-10	Change LICENCE following advince from Kurt Hornik

Version 0.8

2013-12-10	date stamp for CRAN submssion
2013-09-30	mv inst/doc vignettes
		rmdir inst

Version 0.7
2013-09-27	Add MIT to LICENSE

Version 0.6

2012-04-16	Change "integer gmax/50/" into "integer gmax, data gmax/50/" in lmm.f
		as suggested by Brook Milligan [mailto:brook@nmsu.edu]
2012-04-11	Revise example.Rd
2012-04-06	Include incomplete data in marijuana.rda
		Accommodate the change in example.Rd
2012-04-05	Fix typos and add title to Table 1 in lmm-tr.Rnw
2014-11-01 13:31:10 +00:00
cheusov
c75aff0462 Include example scripts, some of the are rather useful.
++pkgrevision.
2014-10-31 00:54:02 +00:00
cheusov
c8e1feb4e4 += crfsuite 2014-10-29 23:14:36 +00:00
cheusov
1a416088f4 CRFSuite is an implementation of Conditional Random Fields (CRFs) for
labeling sequential data. The first priority of this software is to
train and use CRF models as fast as possible even at the expense of
its memory space and code generality. CRFsuite runs 5.4 - 61.8 times
faster than C++ implementations for training. CRFsuite supports
parameter estimation with L1 regularization (Laplacian prior) using
Orthant-Wise Limited-memory Quasi-Newton (OW-LQN) method and L2
regularization (Gaussian prior) using Limited-memory BFGS (L-BFGS)
method.
2014-10-29 23:13:21 +00:00
cheusov
9f5c6fd0ac += liblbfgs 2014-10-29 23:12:17 +00:00
cheusov
abc1d88636 This library is a C port of the implementation of Limited-memory
Broyden-Fletcher-Goldfarb-Shanno (L-BFGS) method written by Jorge
Nocedal. The original FORTRAN source code is available at:
http://www.ece.northwestern.edu/~nocedal/lbfgs.html
2014-10-29 23:10:29 +00:00
cheusov
537fc34f66 += libshorttext 2014-10-29 17:09:39 +00:00
cheusov
16af52c1ec LibShortText is an open source tool for short-text classification and
analysis. It can handle the classification of, for example, titles,
questions, sentences, and short messages. Main features of
LibShortText include
  * It is more efficient than general text-mining packages. On a
    typical computer, processing and training 10 million short texts
    takes only around half an hour.
  * The fast training and testing is built upon the linear classifier
  * LIBLINEAR
  * Default options often work well without tedious tuning.
  * An interactive tool for error analysis is included. Based on the
    property that each short text contains few words, LibShortText
    provides details in predicting each text.
2014-10-29 17:06:40 +00:00
cheusov
3ff020199c Fix hardcoded paths to executables; ++pkgrevision 2014-10-19 22:11:22 +00:00
cheusov
627d01b121 += liblinear 2014-10-19 16:48:44 +00:00
cheusov
aa901feeca Add liblinear.
LIBLINEAR is a linear classifier for data with millions of instances
and features. It supports
    L2-regularized classifiers
    L2-loss linear SVM, L1-loss linear SVM, and logistic regression (LR)
    L1-regularized classifiers (after version 1.4)
    L2-loss linear SVM and logistic regression (LR)
    L2-regularized support vector regression (after version 1.9)
    L2-loss linear SVR and L1-loss linear SVR.
Main features of LIBLINEAR include
    Same data format as LIBSVM, our general-purpose SVM solver,
        and also similar usage
    Multi-class classification: 1) one-vs-the rest, 2) Crammer & Singer
    Cross validation for model selection
    Probability estimates (logistic regression only)
    Weights for unbalanced data
    MATLAB/Octave, Java, Python, Ruby interfaces
2014-10-19 09:57:21 +00:00
cheusov
3ff3680eea Add more utilities and files to libsvm package 2014-10-19 08:59:31 +00:00
szptvlfn
9b07cabdd2 Bump PKGREVISION for hs-vector-0.10.12.1 2014-10-18 21:28:58 +00:00
joerg
685155bfef Racy build. 2014-10-15 22:06:23 +00:00
jaapb
1e2c6eff15 Revbump for ocaml 4.02.0.
(Some packages omitted because they will be updated to new versions)
2014-10-09 19:14:03 +00:00
wiz
cda18437be Remove pkgviews: don't set PKG_INSTALLATION_TYPES in Makefiles. 2014-10-09 14:05:50 +00:00
wiz
e8647fedbb Remove SVR4_PKGNAME, per discussion on tech-pkg. 2014-10-09 13:44:32 +00:00
wiz
388e2d5aff Remove wxMaxima; wxmaxima replaces it. 2014-10-01 11:10:30 +00:00
wiz
e8b3efff42 Import wxmaxima-14.09.0 as math/wxmaxima. The casing of the package name
is finally consistent.

This is a graphical UI for the computer algebra system maxima.

Changes compared to math/wxMaxima:

14.09.0:
Bugfixes and compatibility with wxGTK-3.x.
2014-10-01 11:09:55 +00:00
jperkin
f501709395 Requires zlib. 2014-09-29 15:11:43 +00:00
fhajny
1f7b0c1490 Fix PLIST for SunOS. 2014-09-25 12:59:30 +00:00
jperkin
48badf9a0c Replace WRAPPER_BINDIR reference with real path in generated file. 2014-09-24 10:53:22 +00:00
jperkin
71212ef529 Don't include termcap.h on SunOS. 2014-09-23 22:52:01 +00:00
jperkin
b4efa95a07 Remove TOOLS_DIR references from the generated pari.cfg. 2014-09-23 09:08:21 +00:00
wiz
490710b08f Update to 3.1.1 and fix build with py-cython-0.20+.
We are happy to announce PyTables 3.1.1.

This is a bug-fix release that addresses a critical bug that make PyTables
unusable on some platforms.


What's new
==========

- Fixed a critical bug that caused an exception at import time.
  The error was triggered when a bug in long-double detection is detected
  in the HDF5 library (see :issue:`275`) and numpy_ does not expose
  `float96` or `float128`. Closes :issue:`344`.
- The internal Blosc_ library has been updated to version 1.3.5.
  This fixes a false buffer overrun condition that made c-blosc to fail,
  even if the problem was not real.

As always, a large amount of bugs have been addressed and squashed as well.
2014-09-20 17:56:36 +00:00
wiz
664fa26e58 - R-formatR. 2014-09-20 09:13:49 +00:00
brook
2b9ecca12f Move math/R-knitr to print/R-knitr.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-20 04:11:43 +00:00
brook
eceb5fda98 Move math/R-evaluate to devel/R-evaluate and fix dependencies.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-20 03:53:54 +00:00
brook
f6a1f767e0 Move math/R-digest to security/R-digest and fix dependencies.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-20 03:34:56 +00:00
brook
e82aa16ded Move math/R-markdown to textproc/R-markdown and fix dependencies.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-19 22:47:06 +00:00
brook
35e28d2ef6 Move math/R-highr to textproc/R-highr and fix dependencies.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-19 22:34:44 +00:00
brook
0dc0261741 Move math/R-stringr to textproc/R-stringr and fix dependencies.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-19 21:21:16 +00:00
brook
312c623188 Fix dependency on R-Rcpp, which was moved from math/R-Rcpp to devel/R-Rcpp.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-19 21:19:40 +00:00
brook
0443d94659 Move math/R-Rcpp to devel/R-Rcpp.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-19 21:17:12 +00:00
brook
a1b93a3672 Move math/R-countrycode to geography/R-countrycode.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-19 20:55:07 +00:00
brook
239aa353bd Move math/R-mime to mail/R-mime.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-19 20:46:32 +00:00
brook
55b5323a70 Move math/R-formatR to textproc/R-formatR and fix depending packages.
Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-19 20:36:53 +00:00
brook
7412b1b573 Remove math/R-latticeExtra and switch dependency to reimported package
in graphics/R-latticeExtra.

Note: this commit is part of reorganizing some of the recently
imported R packages, which are being reimported into more appropriate
categories (and removed from math) as a result of a recent discussion
on tech-pkg and privately with wiz@.  See the thread starting with:

  http://mail-index.netbsd.org/tech-pkg/2014/09/05/msg013558.html
2014-09-19 19:42:13 +00:00
szptvlfn
668b6e01c1 Update to 0.15.3
CHANGELOG:
0.15.3
------
* `instance NFData a => NFData (NonEmpty a)`
* Added `NFData` instances for the types in Data.Semigroup
2014-09-14 18:26:13 +00:00
szptvlfn
45de396234 Update to 0.3.3.1
changelog:
0.3.3.1
	*  Allow newer tasty, tasty-hunit and criterion
2014-09-14 18:25:25 +00:00
szptvlfn
75be48599d Bump PKGREVISION for hs-text-1.2.0.0 2014-09-13 22:23:27 +00:00
szptvlfn
57b7951159 Bump PKGREVISION for hs-text-1.1.1.3 2014-09-05 21:27:09 +00:00
wen
56d2bbcccb Update to 0.43
Upstream changes please visit:
http://cpansearch.perl.org/src/DANAJ/Math-Prime-Util-0.43/Changes
2014-09-04 07:09:56 +00:00
brook
483b53cb62 Added R-knitr v1.6. 2014-09-03 21:34:51 +00:00
brook
63c7cd0a09 Initial revision of R-knitr v1.6.
This package provides a general-purpose tool for dynamic report
generation in R, which can be used to deal with any type of (plain
text) files, including Sweave, HTML, Markdown, reStructuredText,
AsciiDoc, and Textile. R code is evaluated as if it were copied and
pasted in an R terminal thanks to the evaluate package (e.g., we do
not need to explicitly print() plots from ggplot2 or lattice). The
language in code chunks is not restricted to R (there is simple
support to Python and shell scripts, etc). Many features are borrowed
from or inspired by Sweave, cacheSweave, pgfSweave, brew and decumar.
2014-09-03 21:33:47 +00:00
brook
1fc1d3f50e Added R-digest v0.6.4. 2014-09-03 18:52:42 +00:00
brook
382e48a498 Initial revision of R-digest v0.6.4.
The digest package provides a function 'digest()' for the creation of
hash digests of arbitrary R objects (using the md5, sha-1, sha-256 and
crc32 algorithms) permitting easy comparison of R language objects, as
well as a function 'hmac()' to create hash-based message
authentication code.
2014-09-03 18:49:51 +00:00