bacon
36901a2a68
Add hisat2
2019-01-15 01:27:42 +00:00
bacon
aefc835978
Add canu
2019-01-07 02:34:21 +00:00
bacon
136f8fcc3b
Add stacks
2018-12-22 21:53:23 +00:00
bacon
669fe112b9
Add kallisto
2018-12-21 19:03:46 +00:00
adam
1d7a39df12
bcftools: added version 1.9
...
BCFtools is a program for variant calling and manipulating files in the Variant
Call Format (VCF) and its binary counterpart BCF. All commands work
transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
In order to avoid tedious repetion, throughout this document we will use "VCF"
and "BCF" interchangeably, unless specifically noted.
Most commands accept VCF, bgzipped VCF and BCF with filetype detected
automatically even when streaming from a pipe. Indexed VCF and BCF work in all
situations. Unindexed VCF and BCF and streams work in most, but not all
situations. In general, whenever multiple VCFs are read simultaneously, they
must be indexed and therefore also compressed.
2018-11-15 09:21:24 +00:00
leot
ff020a3410
biology: +py-pydicom
2018-10-31 20:16:30 +00:00
bacon
32ab611e22
Add trimmomatic
2018-07-25 15:15:50 +00:00
bacon
6136f9678e
Add samtools
2018-05-07 18:40:10 +00:00
bacon
584191f36d
Add htslib
2018-04-30 16:53:07 +00:00
bacon
6801a45e0e
Add ncbi-blast+
2018-04-27 20:30:24 +00:00
mef
a56100d88d
Deleting p5-BioPerl. Duplicate with bioperl. Sorry.
2017-05-10 15:09:47 +00:00
mef
cc5e5d1dcf
Added biology/p5-BioPerl version 1.007001
2017-05-07 13:59:16 +00:00
leot
7b83648f44
Add bwa.
2015-10-14 17:13:44 +00:00
leot
408f6ea29e
Add cdhit.
2015-10-12 16:49:03 +00:00
asau
2ffed7a925
+ gabedit
2015-07-22 19:49:07 +00:00
fhajny
c00a54ff57
Add p5-Bio-ASN1-EntrezGene
2014-02-20 11:44:51 +00:00
asau
f97d8dda23
+ mpqc
2013-03-16 12:45:33 +00:00
asau
0e747dbb57
+ plinkseq
2012-11-01 04:08:03 +00:00
asau
9775ab5cd8
+ plink
2012-09-14 17:49:03 +00:00
brook
b50285d184
Initial import of primer3.
...
Primer3 is a widely used program for designing PCR primers (PCR =
"Polymerase Chain Reaction"). PCR is an essential and ubiquitous tool
in genetics and molecular biology. Primer3 can also design
hybridization probes and sequencing primers.
2011-10-31 21:25:57 +00:00
ryoon
f921a2d1cf
Add bodr, chemical-mime-data, gnome-chemistry-utils, and openbabel.
2011-10-05 22:29:44 +00:00
asau
8fbb4c766a
Sort list.
2010-03-18 08:02:32 +00:00
asau
35ecaf319e
+ gromacs
2010-03-15 14:10:38 +00:00
tnn
7065ab1326
Add misc/dvtm, biology/mopac, emulators/yabause.
2008-03-09 18:28:54 +00:00
rillig
6aecf48699
Added mk/misc/category.mk, which contains the definitions that are only
...
useful for category Makefiles, as opposed to bsd.pkg.subdir.mk, which is
also relevant for the top-level directory. Adjusted the category Makefiles.
2007-08-13 08:12:41 +00:00
wiz
daf939404d
Finish move of pymol to py-mol.
2007-08-12 03:21:06 +00:00
minskim
4913f6ecc9
Add azara.
2005-11-05 01:49:34 +00:00
perry
9b21c0e35c
add pymol
2005-10-07 21:37:15 +00:00
jmmv
ce0062d15d
Add and enable arka.
2005-03-27 13:09:19 +00:00
minskim
7b94f8c2bb
Add and enable lucy.
2005-03-26 17:06:50 +00:00
jschauma
3e0bfff865
Add/enable xylem
2003-10-04 19:16:29 +00:00
jschauma
c34937f178
Add/enable glimmer.
2003-09-30 02:11:32 +00:00
jschauma
ecaefb1578
Add/enable genesplicer.
2003-09-30 01:57:35 +00:00
jschauma
53f2681a9f
Add/enable fluctuate.
2003-09-30 01:20:02 +00:00
jschauma
f04d4bf38a
Add/enable coalesce.
2003-09-30 01:04:39 +00:00
jschauma
52e686b5bd
Add/enable stride
2003-09-27 23:47:20 +00:00
jschauma
7b86174cc4
Add/enable sewer
2003-09-27 23:36:59 +00:00
jschauma
115d93fc1f
Add/enable profit
2003-09-27 23:18:55 +00:00
jschauma
17127b1ec0
Add/enable mummer
2003-09-27 22:25:54 +00:00
jschauma
836b031b26
Add/enable hmmer.
2003-09-26 03:53:10 +00:00
jschauma
975db5d56b
Add/enable gp.
2003-09-26 03:30:26 +00:00
jschauma
8ccab174e6
Add/enable pdbalign.
2003-09-26 03:18:15 +00:00
wiz
02e8ee6a47
Update to new COMMENT style: COMMENT var in Makefile instead of pkg/COMMENT.
...
While I'm here, unify category Makefiles to more standard style.
(If you have tools depending on the previous form, please fix them.)
2001-02-16 15:51:46 +00:00
jtb
43fc1ac0f0
Add and enable "chemtool". Fixes PR pkg/11377 by Jason Beegan.
2000-11-25 20:14:30 +00:00
wiz
18734b9939
add and enable rasmol
2000-03-13 04:43:21 +00:00
wiz
f895e15bb9
remove commented out SUBDIR += lines for packages that never got
...
converted from FreeBSD, or have been disabled since. Sorted lines
alphabetically, added some missing directories.
2000-02-25 01:04:11 +00:00
rh
1e10c515bb
Add and enable fastDNAml
1999-07-28 20:20:39 +00:00
rh
3458de5977
Enable clustalw
1999-07-28 20:08:38 +00:00
rh
0efe3c63e7
Enable phylip
1999-07-28 19:19:56 +00:00
rh
7f90c37101
Add and enable puzzle.
1999-07-28 19:00:39 +00:00
