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323364 commits

Author SHA1 Message Date
mef
7c23b74104 (math/py-numpy) INSTALL.rst.txt says Cython >= 0.29.21 2020-08-11 05:58:29 +00:00
rjs
fbbdf313fc Updated lang/sbcl to version 2.0.7. 2020-08-10 23:20:18 +00:00
rjs
2022616b63 Update to version 2.0.7.
Allow it to be built with lang/abcl. Remove build dependency on lang/sbcl
if bootstrapping.

Changes since version 1.5.7

New in version 2.0.7

    * minor incompatible change: SB-THREAD:THREAD-OS-TID returns NIL
      for a thread which has exited.
    * minor incompatible change: OPEN no longer calls TRUENAME
      implicitly on a string filespec prior to issuing an open()
      system call.
    * minor incompatible change: PATHNAME is no longer a STRUCTURE-OBJECT.
    * documentation: HASH-FUNCTION is a function
      designator. (#1888028, reported by Jacek Zlydach)
    * bug fix: eliminated a potential garbage-collector deadlock when
      linking with TCMalloc.
    * bug fix: foreign threads (those not made by
      SB-THREAD:MAKE-THREAD) can not crash with a "GC_PENDING, but
      why?" error when returning back from Lisp into the foreign
      caller.
    * bug fix: sb-fasteval crashed trying to install a JIT-compiled
      DEFSTRUCT accessor in a locked package.
    * bug fix: removed misuse of putwc() which caused stdio streams to
      drop characters.
    * bug fix: the "maximum interrupt nesting depth exceeded" error
      generated in the C runtime is significantly less likely to
      occur.
    * bug fix: sb-sprof should no longer segfault from calling
      pthread_kill() on a nonexistent thread.
    * bug fix: a portability issue arising from various build hosts
      (#1886255, reported by Pierre Neidhart)
    * bug fix: spurious compiler warnings from REDUCE with
      :INITIAL-VALUE. (#1885515, reported by Michael South)
    * bug fix: an inconsistency between class hierarchies and the type
      system under some circumstances involving
      redefinition. (#1886397, reported by Atilla Lendvai)
    * bug fix: the USE-VALUE restart for OPEN on non-existent files is
      more likely to function as expected. (#1886587)
    * bug fix: various invalid inputs to ROTATE-BYTE no longer cause
      compiler errors. (#1887164, #1888152)
    * optimization: PPC64 on linux uses the __thread annotation on C
      variables in preference to pthread_setspecific() and
      pthread_getspecific().

New in version 2.0.6

    * planned incompatible change: the defined symbols in the
      Metaobject Protocol, currently accessible from both SB-MOP and
      SB-PCL packages, will in a later release be no longer exported
      from SB-PCL.
    * platform support:
        * better support for dynamic-extent on the SPARC architecture.
        * bug fix for loading very large core files.
        * bug fix for logior and logxor on PPC64.
    * enhancement: EQUALP on structure instances uses code specialized
      to each structure type, inlining comparison of non-pointer
      slots.
    * enhancement: some standard operators, such as
      WITH-OUTPUT-TO-STRING and CHANGE-CLASS, have been adapted to use
      dynamic-extent temporary objects, and so cons less garbage on
      the heap.
    * enhancement: read tables are more space- and speed efficient
    * bug fix: stream conditions with dynamic-extent streams have the
      stream replaced by a stub. (reported by Matt Kaufmann)
    * bug fix: garbage collections triggered from foreign callbacks
      crashed. (#1884403, reported by Andrew Kent)
    * bug fix: compiler failure in compiling MAKE-LIST. (#1881349)
    * bug fix: using the debugger from frames with calls to functions
      with unsupplied optional arguments is less likely to cause heap
      corruption. (#1883745)

New in version 2.0.5

    * platform support:
	* experimental support for ARM32 and ARM64 on OpenBSD
	* better musl libc support. (#1768368, thanks to Eric Timmons)
	* more correct use of futexes on 64-bit Linux. (#1876825,
          reported by Ilya Perminov)
	* restore building on current Solaris. (#1881393, thanks to
          Shawn Ellis)
    * enhancement: CMUCL-style START-BLOCK and END-BLOCK declarations
      are now supported for block compiling forms at a sub-file
      granularity.
    * enhancement: IPv6 support in sb-bsd-sockets is enabled on Windows.
    * minor change: *compile-print* now makes it more clear what block
      compilation is actually doing. The default output is now
      slightly more verbose as a result.
    * bug fix: number keys in EQUALP hash tables are correctly
      hashed. (#1878653, reported by Syll)
    * bug fix: EQness is better preserved given partial sharing of
      list contents in the file compiler. (#1583753, reported by Denis
      Budyak)
    * bug fix: the peephole pass neglected to preserve jump table
      labels. (#1876485)
    * bug fix: fix compiler crash in block compilation merging of
      toplevel lambdas. (#1865336, reported by il71)
    * bug fix: sb-introspect's function-lambda-arglist is better at
      extracting default values of nested macro arguments. (#1876194)
    * bug fix: RESTART-BIND's body is an implicit progn, and so does
      not accept declarations. (#1876303, reported by Michal Herda)
    * optimization: EQUAL hash tables with keys involving
      structure-objects will have fewer systematic collisions.

New in version 2.0.4

    * platform support:
	* 32-bit RISC-V is now fully supported. Unlike other ports,
          its backend is entirely shared with 64-bit RISC-V.
	* native threads are now supported on RISC-V.
	* fix and add some x86-64 vector instructions. (reported by
          Shubhamkar Ayare)
	* improve pointer representation on ppc64 for low-level
          performance improvement.
	* threads are more stable on big-endian ppc64
    * enhancement: forward-referenced type tests can now be open-coded
      by using block compilation. The result is that mutually
      referential defstructs are now efficiently compiled in block
      compilation mode, superseding a lighter mechanism that worked in
      fewer contexts. However, that lighter mechanism has been
      removed, so for now, users who want to efficiently compile
      mutually referential defstructs must explicitly opt-in using
      block compilation.
    * bug fix: defstructs with empty initforms in the sbcl source are
      now explicitly intiialized with NIL, as that is undefined
      behavior under ANSI. This helps cross compilation hosts which do
      not implicitly initialize empty initform slots to NIL. (Thanks
      to Karsten Poeck)
    * bug fix: backtracing through assembly routines now works
      properly on RISC-V.
    * bug fix: ASH no longer gets miscompiled in certain edge cases on RISC-V.
    * bug fix: &MORE args have been slightly optimized and are more
      correct on RISC-V.
    * bug fix: unused local functions with &REST/&KEY/&OPTIONAL now
      also issue a deletion note.
    * bug fix: APPLY on a large list ("large" being in excess of 2k to
      16k items depending on the platform) can no longer crash the
      gencgc collector.
    * bug fix: sb-concurrency FRLOCK algorithm has been corrected. (#1087955)
    * bug fix: block compilation now respects inlining declarations
      better (like CMUCL).
    * optimization: hashing of structures with raw slots for EQUALP
      hash tables has been improved.

New in version 2.0.3

    * incompatible change: the external format now defaults to UTF-8
      and is not affected by LANG. SB-EXT:*DEFAULT-EXTERNAL-FORMAT* is
      now the only way to change it.
    * minor incompatible change: the undocumented :EPHEMERAL argument
      to MAKE-THREAD has been removed.
    * minor incompatible change: DECLARE type testing of structure
      types when the SAFETY optimization quality is less than SPEED
      (but greater than 0) is precise, rather than merely testing that
      an object is a (general) STRUCTURE-OBJECT.
    * platform support
	* respect sunos platform assembler flag handling
	* riscv architecture can be detected during the build
	* enabled the sb-dynamic-core feature on riscv, sparc, and
          made it unconditional everywhere
	* cheneygc is an option for arm and arm64
    * enhancement: the installed sbcl executable tree can be renamed
      or moved without risk of incorrectly referencing a '.core' file
      from an obsolete path. (#666086)
    * optimization: transform (values-list (list one-item)) to (values
      one-item) as multiple items were already recognized.

New in version 2.0.2

    * new feature: CMUCL-style block compilation support has been
      added, allowing whole program optimization. It has been
      documented in a new section of the manual entitled "Advanced
      Compiler Use and Efficiency Hints". In particular, users of
      block compilation will find a large speedup for numerical code,
      as functions which call or return floating point values will
      keep everything unboxed.
    * bug fix: in CHANGE-CLASS, handle non-standard
      slot-value-using-class for :INSTANCE and :CLASS slots
      better. (reported by Shinmera on #sbcl)
    * bug fix: REMHASH in an EQUAL or EQUALP hash-table works
      correctly on a key for which EQUAL (respectively EQUALP) is
      reduced to EQ. (#1865094)
    * bug fix: do not emit a warning for DEFCLASS slots with
      mismatched :TYPE and :INITFORM when the class has a non-standard
      metaclass.
    * bug fix: DISASSEMBLE on SPARC is less likely to spuriously
      annotate code sequences as error traps.

New in version 2.0.1

    * minor incompatible change: some symbols have been removed from
      *FEATURES* based on a determination of which should be
      impermissible to examine via #+ and #- reader macros in
      user-written code.
    * optimization: DEFSTRUCT copiers including COPY-STRUCTURE are
      able to stack-allocate the result when declared dynamic-extent.
    * bug fix: loop analysis code more robust. In particular, loop
      nesting depth is computed more accurately, improving the
      register allocation around loops.

New in version 2.0.0

    * minor incompatible change: heap relocation now works on
      Windows. Since this feature now works on all platforms, it is
      enabled unconditionally and the :RELOCATABLE-HEAP symbol no
      longer appears on *FEATURES* in any builds. (Thanks to Luís
      Borges de Oliveira)
    * enhancement: malformed type specifiers and occurrences of
      deprecated types in :TYPE initargs of DEFCLASS and
      DEFINE-CONDITION slot specifications are detected and result in
      compile-time errors and warnings respectively.
    * enhancement: parallel contrib building, controlled by
      SBCL_MAKE_JOBS=-jX the same as for the C runtime.
    * bug fix: add a walker template for WITH-SOURCE-FORM.
    * bug fix: start the summary of a compilation unit on a fresh
      line. (Thanks to Zach Beane)
    * bug fix: on Windows, PARSE-NATIVE-NAMESTRING produces an
      absolute directory when parsing a bare drive name and
      :AS-DIRECTORY is specified. (Thanks to Luís Borges de Oliveira)
    * bug fix: on RISCV, the runtime is linked with libz if the core
      compression feature is requested. (Thanks to Andreas Schwab)
    * bug fix: ADJOIN using an EQL test and a KEY function only
      transforms into an EQ test if the key function returns values
      for which EQ and EQL are guaranteed to be the same.
    * optimizations:
	* the instruction sequence for multiple-value calls is more
          efficient on x86-64.
	* the direction flag is now unused on x86 and x86-64 when
          handling an unknown number of return values. (Thanks to
          Fanael Linithien)
	* the x86-64 backend is better able to use memory operands for
          arithmetic operations.
	* compilation of TYPECASE to a jump table is enabled when all
          the types being tested are frozen.
	* compilation of CASE and ECASE into a jump table has been
          implemented on 32- and 64-bit powerpc platforms.
	* the implementation of Unicode normalization has been sped up.
	* pretty-printing dispatch on conses is faster, particularly
          with the standard pretty-print dispatch table. Deeply-nested
          forms should also pretty-print faster.

New in version 1.5.9

    * platform support:
	* a message intended to be more helpful will be displayed for
        an mmap failure on OpenBSD.
	* the soft-float ABI on ARM32 is better supported, in
          particular in returning double floats from calls into C.
    * optimizations:
	* CASE and ECASE with symbols as keys may be optimized into a
          vector lookup if all result forms are quoted or
          self-evaluating objects.
	* CASE and ECASE can be optimized into a jump table on the
          x86[-64] backends with arbitrary result forms provided that
          the clause keys are either all fixnums, all characters, or
          all symbols.
	* a number of forms are converted to use CASE in circumstances
          where that makes sense, including calls to POSITION, MEMQ
          and MEMBER, and TYPECASE where the types are MEMBER/EQL
          types.
	* POSITION of a variable symbol in a constant sequence of
          symbols is converted to CASE and thence to a jump table.
	* TYPECASE of a variable where the clauses are member types is
          converted to CASE and thence to a jump table.
	* a number of slow instructions are no longer used on x86 and
          x86-64 machines. (Thanks to Fanael Linithien)
	* the compiler is better at tracking the implications of
          branches after EQ and EQL tests.
	* parsing &KEY lists is slightly less register-intensive.
	* a pattern-based peephole optimizer pass has been added,
          running some simple transformations on the x86-64 backend.
    * enhancements: more thorough compile-time type checking of
      various initforms (defclass, &key, defstruct).
    * bug fix: unions of complicated CONS types are less likely to
      cause an infinite loop. (#1799719)
    * bug fix: DESCRIBE on functions not named by extended function
      designators no longer signals a type error. (#1850531, reported
      by Michal Herda)

New in version 1.5.8

    * platform support:
        * support for Mac OS X Catalina
	* improvements in interoperability with C code compiled with
          memory sanitization options
	* libsbcl.so links to zlib when sb-core-compression is
          enabled. (#1845763, thanks to Juan M. Bello-Rivas)
	* workarounds for BSD issues around mmap() and
          pthread_attr_setstack(). (#1845936) support SSE for bzero if
          available on OpenBSD
    * optimizations:
	* improved type understanding and translations for division
          operators (including TRUNCATE, GCD, LCM).
	* sequential comparisons and branches can elide intermediate
          comparisons. (#1847284)
	* convert EQUAL and EQUALP to EQL if either of the arguments
          is a type for which the structural equality predicate is
          identical to the simpler equality check. (#1848583)
	* internal operators implementing string comparisons produce
          simpler-to-consume values. (#1848776)
    * bug fix: inspecting adjustable arrays and vectors with fill
      pointers works better. (#1846191, reported by Yves Pagani)
2020-08-10 23:18:51 +00:00
taca
e91f34276d doc: note update of mail/roundcube t 1.4.8
Update roundcube packages to 1.4.8.

	mail/roundcube
	mail/roundcube-plugin-enigma
	mail/roundcube-plugin-password
	mail/roundcube-plugin-zipdownload
2020-08-10 22:33:06 +00:00
taca
a929c817f1 mail/roundcube: update to 1.4.8
Update roundcube to 1.4.8, security release.


RELEASE 1.4.8
-------------
- Security: Fix potential XSS issue in HTML editor of the identity signature input (#7507)
- Managesieve: Fix too-small input field in Elastic when using custom headers (#7498)
- Fix support for an error as a string in message_before_send hook (#7475)
- Elastic: Fix redundant scrollbar in plain text editor on mail reply (#7500)
- Elastic: Fix deleted and replied+forwarded icons on messages list (#7503)
- Managesieve: Allow angle brackets in out-of-office message body (#7518)
- Fix bug in conversion of email addresses to mailto links in plain text messages (#7526)
- Fix format=flowed formatting on plain text part derived from the HTML content (#7504)
- Fix incorrect rewriting of internal links in HTML content (#7512)
- Fix handling links without defined protocol (#7454)
- Fix paging of search results on IMAP servers with no SORT capability (#7462)
- Fix detecting special folders on servers with both SPECIAL-USE and LIST-STATUS (#7525)
- Security: Fix cross-site scripting (XSS) via HTML messages with malicious svg content [CVE-2020-16145]
- Security: Fix cross-site scripting (XSS) via HTML messages with malicious math content
2020-08-10 22:30:41 +00:00
wiz
a081e40e94 php-baikal: This needs php-json, depend on it.
Bump PKGREVISION.
2020-08-10 20:54:45 +00:00
brook
601ca2eed6 doc: Added biology/R-popbio version 2.7 2020-08-10 18:19:00 +00:00
brook
3f19906b94 biology/R-popbio: import R-popbio-2.7
Construct and analyze projection matrix models from a demography study
of marked individuals classified by age or stage. The package covers
methods described in Matrix Population Models by Caswell (2001) and
Quantitative Conservation Biology by Morris and Doak (2002).
2020-08-10 18:18:46 +00:00
pin
6f40fd86b5 doc: Updated graphics/kvantum to 0.16.1 2020-08-10 16:59:11 +00:00
pin
d1d6c672ee graphics/kvantum: update to 0.16.1
V0.16.1
---------
 * Consider a toolbar stylable if it contains a tabbar that isn't inside the
same window.
 * Be more explicit about the color group when getting colors from the standard
palette.
2020-08-10 16:58:29 +00:00
nia
8a8bff7292 janet: CFLAGS.NetBSD no longer needed here 2020-08-10 14:45:53 +00:00
adam
a5e7dcbe6d Updated devel/py-joblib, textproc/py-nltk 2020-08-10 14:43:32 +00:00
adam
627c6075a0 py-nltk: updated to 3.5
Version 3.5
* add support for Python 3.8
* drop support for Python 2
* create NLTK's own Tokenizer class distinct from the Treebank reference tokeniser
* update Vader sentiment analyser
* fix JSON serialization of some PoS taggers
* minor improvements in grammar.CFG, Vader, pl196x corpus reader, StringTokenizer
* change implementation <= and >= for FreqDist so they are partial orders
* make FreqDist iterable
* correctly handle Penn Treebank trees with a unlabeled branching top node.
2020-08-10 14:43:10 +00:00
adam
415606b03d py-joblib: updated to 0.16.0
Release 0.16.0
--------------

- Fix a problem in the constructors of of Parallel backends classes that
  inherit from the `AutoBatchingMixin` that prevented the dask backend to
  properly batch short tasks.

- Fix a problem in the way the joblib dask backend batches calls that would
  badly interact with the dask callable pickling cache and lead to wrong
  results or errors.

- Prevent a dask.distributed bug from surfacing in joblib's dask backend
  during nested Parallel calls (due to joblib's auto-scattering feature)

- Workaround for a race condition after Parallel calls with the dask backend
  that would cause low level warnings from asyncio coroutines:
2020-08-10 14:41:36 +00:00
nia
981d030691 doc: Updated net/bftpd to 5.6 2020-08-10 13:49:55 +00:00
nia
dfe0c97dfb bftpd: Update to 5.6
Jesse Smith <jessefrgsmith@yahoo.ca> -> 5.6
	- When Bftpd is run with the -n flag (no configuration file)
          default ratio settings prevented files from downloading.
          Samuel Hsu has patched Bftpd to assume no ratio ("") is
          treated the same as "none" or no restrictions.
	- Fixed potential overflow in buffer for directory listing.
	- Used calloc() and single strlen() call to avoid having
	  a string without a NULL terminator mystring library.
2020-08-10 13:49:15 +00:00
js
a7f3049d74 Update multimedia/sickgear to 0.21.42
Changes:

0.21.40:
* Change allow Python 3.8.5

0.21.41:
* Update NZBGet extension 2.5 to 2.6

0.21.42:
* Fix SickBeard search API compatibility issue
2020-08-10 13:46:15 +00:00
wiz
401e682f38 redis: remove trailing space in startup script 2020-08-10 11:23:50 +00:00
mef
f820c0e504 doc: Updated geography/R-deldir to 0.1.28 2020-08-10 08:55:11 +00:00
mef
2ceae2f20f (geography/R-deldir) Updated 0.1.28
Version 0.1-28

 Removed a browser() call that I'd left lying around in deldir().
  Grrrrrr!!!!

 15/07/2020
2020-08-10 08:54:59 +00:00
adam
b68d98e4e6 Updated misc/py-stdnum, www/py-hstspreload 2020-08-10 06:57:13 +00:00
adam
6248be5b97 py-hstspreload: updated to 2020.8.8
2020.8.8:
Sync with Chromium.
2020-08-10 06:56:56 +00:00
adam
bc47d2d253 py-stdnum: updated to 1.14
changes from 1.13 to 1.14
-------------------------

* Add modules for the following number formats:

  - УНП, UNP (Учетный номер плательщика, the Belarus VAT number)
  - AIC (Italian code for identification of drugs) (thanks Fabrizio Montanari)
  - Company Number (מספר חברה, or short ח.פ. Israeli company number)
    (thanks Leandro Regueiro)
  - NIT (Número de Identificación Tributaria, El Salvador tax number)
    (thanks Leandro Regueiro)
  - USCC (Unified Social Credit Code, 统一社会信用代码, China tax number)
    (thanks Leandro Regueiro)
  - UEN (Singapore's Unique Entity Number) (thanks Leandro Regueiro)
  - BRN (사업자 등록 번호, South Korea Business Registration Number)
    (thanks Leandro Regueiro)
  - MST (Mã số thuế, Vietnam tax number) (thanks Leandro Regueiro)
  - NPWP (Nomor Pokok Wajib Pajak, Indonesian VAT Number)
    (thanks Leandro Regueiro)
  - UBN (Unified Business Number, 統一編號, Taiwanese tax number)
    (thanks Leandro Regueiro)
  - UTR (United Kingdom Unique Taxpayer Reference) (thanks Mohammed Salman)
  - ONRC (Ordine din Registrul Comerţului, Romanian Trade Register identifier)
    (thanks dotbit1)
  - GS1-128 (Standard to encode product information in Code 128 barcodes)
    (thanks Sergi Almacellas Abellana)
  - VATIN (International value added tax identification number)
    (thanks Leandro Regueiro)

* Fix missing Dominican Republic NCF document types (thanks Gustavo Valverde)
* Fix issue with extra plus or minus in Swedish Personnummer
  (thanks balderman)
* Update Dominican Republic DGII endpoint (thanks Gustavo Valverde)
* Support validating temporary Finnish personal identity codes
  (thanks Aleksi Hoffman)
* Fix misleading docstring in se.personnummer.get_birth_date()
  (thanks Leon Sandøy)
* Improve birth date validation in Danish CPR (thanks Leon Sandøy)
* Add birth date validating in Norwegian Fødselsnummer (thanks Leon Sandøy)
* Add missing vat aliases for a number of countries (thanks Leandro Regueiro)
* Use HTTPS instead of HTTP fox VIES lookups (thanks grzekru)
* Switch to HTTPS URLs where possible
* Support 6 as third digit in Ecuadorian CI (thanks Christopher Ormaza)
* Add an online check for South Korean BRN
* Fix unescaping in Dominican Republic RNC online check (thanks evaldez89)
* Support foreign residents for Romanian CNP (thanks dotbit1)
2020-08-10 06:55:46 +00:00
adam
90706732bc Updated databases/py-asyncpg, databases/py-ldap3 2020-08-10 06:13:43 +00:00
adam
f6f6fe2842 py-ldap3: updated to 2.8
2.8:
- new feature: SafeSync strategy (SAFE_SYNC) for using a synchronous Connection object in a multi-threading program
- new feature: LDIF_LINE_LENGTH for specifying line length wrapping in ldif-content output (default to 78 as per RFC 2849)
- fixed requirements for pyasn1
- fixed regression for ldapi connections
- fixed issue with lazy connection requesting server info on every operation
- fixed searching by objectGUID in hex format (thanks Matt)
- added iso_format parameter to utils.format_json to return dates in ISO format (thanks Hugh)
- fixed issue with Referral attributes not returned by the referral server (thanks Nazarii)
- fixed lost error message in auto_bind (thanks cfelder)
- fixed delete_old_dn in mock connections (thanks kpinc)
- fixed a ResourceWarning with lazy connections
- fixed entry_to_json() that in python2 modified the original entry value (thanks Dirk-Jan)
- tests desnt' raise Exception if real server is not present
2020-08-10 06:12:08 +00:00
adam
41be6023d2 py-asyncpg: updated to 0.21.0
asyncpg v0.21.0

Improvements

Add support for password functions (useful for RDS IAM auth)
Add support for connection termination listeners
Update CI matrix, aarch64 builds

Fixes

Fix possible uninitalized pointer access on unexpected array
message data (CVE-2020-17446)
Fix Connection class _copy_in private method
Bump pgproto to fix compilation issues
Improve pool documentation examples
Update usage.rst
Fix links in connection documentation
Fix usage documentation for hstore
Fix compiler warnings
2020-08-10 06:11:17 +00:00
joerg
78c08fe40d Apply python restrict of py-ipykernel cursively 2020-08-09 23:37:32 +00:00
joerg
52ba11c46f pbulk-0.70: store end of build in epoche format too
This is nicer for using bulk builds as benchmark as it doesn't require
parsing dates.
2020-08-09 23:18:30 +00:00
joerg
86f7c4f072 Don't depend on openssl.cnf to exist. 2020-08-09 23:16:48 +00:00
joerg
62c0f1bc35 Needs a newer ipython which doesn't support Python 3.6. Adjust. 2020-08-09 23:15:47 +00:00
joerg
8b9e072f81 Drop no-op subst. 2020-08-09 23:14:28 +00:00
joerg
b7f305bafe Don't leak tools-perl into config file. Bump revision.
Avoid LOCALBASE and similar clean-up.
2020-08-09 23:12:13 +00:00
rillig
6ef2ed0a80 textproc/tcl-expat: fix some pkglint warnings 2020-08-09 22:14:36 +00:00
nikita
81fccc7625 doc: Updated lang/nim to 1.2.6 2020-08-09 22:11:45 +00:00
nikita
d79c897404 nim: Update to 1.2.6
Changelog extracted from the unspecific changelog.md on the 1.2.6 tag.
Unable to get a Changelog diff for 1.2.4 and 1.2.6.

# v1.4.0 - yyyy-mm-dd

## Standard library additions and changes

  For `net` and `nativesockets`, an `inheritable` flag has been added to all
  `proc`s that create sockets, allowing the user to control whether the
  resulting socket is inheritable. This flag is provided to ease the writing of
  multi-process servers, where sockets inheritance is desired.

  For a transistion period, define `nimInheritHandles` to enable file handle
  inheritance by default. This flag does **not** affect the `selectors` module
  due to the differing semantics between operating systems.

  `system.setInheritable` and `nativesockets.setInheritable` is also introduced
  for setting file handle or socket inheritance. Not all platform have these
  `proc`s defined.

- The file descriptors created for internal bookkeeping by `ioselector_kqueue`
  and `ioselector_epoll` will no longer be leaked to child processes.

- `strutils.formatFloat` with `precision = 0` has been restored to the version
  1 behaviour that produces a trailing dot, e.g. `formatFloat(3.14159, precision = 0)`
  is now `3.`, not `3`.
- `critbits` adds `commonPrefixLen`.

- `relativePath(rel, abs)` and `relativePath(abs, rel)` used to silently give wrong results
  (see #13222); instead they now use `getCurrentDir` to resolve those cases,
  and this can now throw in edge cases where `getCurrentDir` throws.
  `relativePath` also now works for js with `-d:nodejs`.

- JavaScript and NimScript standard library changes: `streams.StringStream` is
  now supported in JavaScript, with the limitation that any buffer `pointer`s
  used must be castable to `ptr string`, any incompatible pointer type will not
  work. The `lexbase` and `streams` modules used to fail to compile on
  NimScript due to a bug, but this has been fixed.

  The following modules now compile on both JS and NimScript: `parsecsv`,
  `parsecfg`, `parsesql`, `xmlparser`, `htmlparser` and `ropes`. Additionally
  supported for JS is `cstrutils.startsWith` and `cstrutils.endsWith`, for
  NimScript: `json`, `parsejson`, `strtabs` and `unidecode`.

- Added `streams.readStr` and `streams.peekStr` overloads to
  accept an existing string to modify, which avoids memory
  allocations, similar to `streams.readLine` (#13857).

- Added high-level `asyncnet.sendTo` and `asyncnet.recvFrom`. UDP functionality.

- `paramCount` & `paramStr` are now defined in os.nim instead of nimscript.nim for nimscript/nimble.
- `dollars.$` now works for unsigned ints with `nim js`

- Improvements to the `bitops` module, including bitslices, non-mutating versions
  of the original masking functions, `mask`/`masked`, and varargs support for
  `bitand`, `bitor`, and `bitxor`.

- `sugar.=>` and `sugar.->` changes: Previously `(x, y: int)` was transformed
  into `(x: auto, y: int)`, it now becomes `(x: int, y: int)` in consistency
  with regular proc definitions (although you cannot use semicolons).

  Pragmas and using a name are now allowed on the lefthand side of `=>`. Here
  is an aggregate example of these changes:
  ```nim
  import sugar

  foo(x, y: int) {.noSideEffect.} => x + y

  # is transformed into

  proc foo(x: int, y: int): auto {.noSideEffect.} = x + y
  ```
- The fields of `times.DateTime` are now private, and are accessed with getters and deprecated setters.

- The `times` module now handles the default value for `DateTime` more consistently. Most procs raise an assertion error when given
  an uninitialized `DateTime`, the exceptions are `==` and `$` (which returns `"Uninitialized DateTime"`). The proc `times.isInitialized`
  has been added which can be used to check if a `DateTime` has been initialized.

- Fix a bug where calling `close` on io streams in osproc.startProcess was a noop and led to
  hangs if a process had both reads from stdin and writes (eg to stdout).

- The callback that is passed to `system.onThreadDestruction` must now be `.raises: []`.
- The callback that is assigned to `system.onUnhandledException` must now be `.gcsafe`.

- `osproc.execCmdEx` now takes an optional `input` for stdin, `workingDir` and `env`
  parameters.

- Added a `ssl_config` module containing lists of secure ciphers as recommended by
  [Mozilla OpSec](https://wiki.mozilla.org/Security/Server_Side_TLS)

- `net.newContext` now defaults to the list of ciphers targeting
  ["Intermediate compatibility"](https://wiki.mozilla.org/Security/Server_Side_TLS#Intermediate_compatibility_.28recommended.29)
  per Mozilla's recommendation instead of `ALL`. This change should protect
  users from the use of weak and insecure ciphers while still provides
  adequate compatibility with the majority of the Internet.

- A new module `std/jsonutils` with hookable `jsonTo,toJson,fromJson` operations for json
  serialization/deserialization of custom types was added.

- A new proc `heapqueue.find[T](heap: HeapQueue[T], x: T): int` to get index of element ``x``
  was added.
- Added `rstgen.rstToLatex` convenience proc for `renderRstToOut` and `initRstGenerator`
  with `outLatex` output.
- Added `os.normalizeExe`, e.g.: `koch` => `./koch`.
- `macros.newLit` now preserves named vs unnamed tuples; use `-d:nimHasWorkaround14720`
  to keep old behavior.
- Added `random.gauss`, that uses the ratio of uniforms method of sampling from a Gaussian distribution.
- Added `typetraits.elementType` to get element type of an iterable.
- `typetraits.$` changes: `$(int,)` is now `"(int,)"` instead of `"(int)"`;
  `$tuple[]` is now `"tuple[]"` instead of `"tuple"`;
  `$((int, float), int)` is now `"((int, float), int)"` instead of `"(tuple of (int, float), int)"`
- Added `macros.extractDocCommentsAndRunnables` helper

- `strformat.fmt` and `strformat.&` support `= specifier`. `fmt"{expr=}"` now
  expands to `fmt"expr={expr}"`.
- deprecations: `os.existsDir` => `dirExists`, `os.existsFile` => `fileExists`

- Added `jsre` module, [Regular Expressions for the JavaScript target.](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions)
- Made `maxLines` argument `Positive` in `logging.newRollingFileLogger`,
  because negative values will result in a new file being created for each logged
  line which doesn't make sense.
- Changed `log` in `logging` to use proper log level on JavaScript target,
  e.g. `debug` uses `console.debug`, `info` uses `console.info`, `warn` uses `console.warn`, etc.
- Tables, HashSets, SharedTables and deques don't require anymore that the passed
  initial size must be a power of two - this is done internally.
  Proc `rightSize` for Tables and HashSets is deprecated, as it is not needed anymore.
  `CountTable.inc` takes `val: int` again not `val: Positive`; I.e. it can "count down" again.
- Removed deprecated symbols from `macros` module, deprecated as far back as `0.15`.


## Language changes
- In newruntime it is now allowed to assign discriminator field without restrictions as long as case object doesn't have custom destructor. Discriminator value doesn't have to be a constant either. If you have custom destructor for case object and you do want to freely assign discriminator fields, it is recommended to refactor object into 2 objects like this:
  ```nim
  type
    MyObj = object
      case kind: bool
        of true: y: ptr UncheckedArray[float]
        of false: z: seq[int]

  proc `=destroy`(x: MyObj) =
    if x.kind and x.y != nil:
      deallocShared(x.y)
      x.y = nil
  ```
  Refactor into:
  ```nim
  type
    MySubObj = object
      val: ptr UncheckedArray[float]
    MyObj = object
      case kind: bool
      of true: y: MySubObj
      of false: z: seq[int]

  proc `=destroy`(x: MySubObj) =
    if x.val != nil:
      deallocShared(x.val)
      x.val = nil
  ```
2020-08-09 22:11:29 +00:00
rillig
6f98806e2a pkgtools/pkg_install: fix pkglint warning about CHECK_PERMS 2020-08-09 21:40:42 +00:00
rillig
657d9c5279 pkgtools/libkver: fix a few pkglint warnings 2020-08-09 21:37:26 +00:00
joerg
d7a3b42da0 Fix build against numpy 1.19. 2020-08-09 19:11:32 +00:00
nia
7f67287d8e doc: Updated devel/gearmand to 1.1.19.1 2020-08-09 19:03:57 +00:00
nia
edc4c6f1af gearmand: Update to 1.1.19.1
Fixing compiler warnings and incorporating security scan results
    Dropped OSX from automated testing
    Various fixes from the community
2020-08-09 19:03:37 +00:00
nia
a3c01af884 luakit: Don't rely on git for versioning 2020-08-09 18:17:42 +00:00
joerg
1331eb4ca0 Unbreak bulk builds by adding R-rgdal. 2020-08-09 17:32:12 +00:00
nia
d7999aa90f doc: Added www/luakit version 2.2 2020-08-09 17:25:52 +00:00
nia
2bf2d0021c www: Add luakit
Luakit is a highly configurable browser framework based on the WebKit web
content engine and the GTK+ toolkit. It is very fast, extensible with Lua,
and licensed under the GNU GPLv3 license. It is primarily targeted at
power users, developers and anyone who wants to have fine-grained control
over their web browser's behaviour and interface.
2020-08-09 17:25:37 +00:00
brook
0eaa7a23e6 geography/R-maps: remove MASTER_SITES
MASTER_SITES is defined in math/R/Makefile.extension, which should be
included by all R packages.  Therefore, MASTER_SITES should not normally
be defined in the Makefile for an R package.
2020-08-09 17:11:46 +00:00
brook
6902d6f424 math/R-tensor: remove MASTER_SITES
MASTER_SITES is defined in math/R/Makefile.extension, which should be
included by all R packages.  Therefore, MASTER_SITES should not normally
be defined in the Makefile for an R package.
2020-08-09 17:08:55 +00:00
brook
f0ddb5d94a math/R-goftest: remove MASTER_SITES
MASTER_SITES is defined in math/R/Makefile.extension, which should be
included by all R packages.  Therefore, MASTER_SITES should not normally
be defined in the Makefile for an R package.
2020-08-09 17:07:33 +00:00
taca
24a01fce8a net/bind916: fix PLIST
Fix PLIST when lmdb option is not enabled (case of default).

Noted by Marc Baudoin via private e-mail.
2020-08-09 17:06:32 +00:00
brook
55700481d1 math/R-LearnBayes: remove MASTER_SITES
MASTER_SITES is defined in math/R/Makefile.extension, which should be
included by all R packages.  Therefore, MASTER_SITES should not normally
be defined in the Makefile for an R package.
2020-08-09 17:05:12 +00:00
brook
5e19c3fb11 graphics/R-polyclip: remove MASTER_SITES
MASTER_SITES is defined in math/R/Makefile.extension, which should be
included by all R packages.  Therefore, MASTER_SITES should not normally
be defined in the Makefile for an R package.
2020-08-09 17:02:38 +00:00