Commit graph

93 commits

Author SHA1 Message Date
asau
d64da5a360 Update to MPICH2 1.3.1
Changes in 1.3.1

 # OVERALL: MPICH2 is now fully compliant with the CIFTS FTB standard
   MPI events (based on the draft standard).

 # OVERALL: Major improvements to RMA performance for long lists of
   RMA operations.

 # OVERALL: Performance improvements for Group_translate_ranks.

 # COLLECTIVES: Collective algorithm selection thresholds can now be controlled
   at runtime via environment variables.

 # ROMIO: PVFS error codes are now mapped to MPI error codes.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r7350:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.3.1

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.3.1?action=follow_copy&rev=HEAD&stop_rev=7350&mode=follow_copy


Changes in 1.3

 # OVERALL: Initial support for fine-grained threading in
   ch3:nemesis:tcp.

 # OVERALL: Support for Asynchronous Communication Progress.

 # OVERALL: The ssm and shm channels have been removed.

 # OVERALL: Checkpoint/restart support using BLCR.

 # OVERALL: Improved tolerance to process and communication failures
   when error handler is set to MPI_ERRORS_RETURN.  If a communication
   operation fails (e.g., due to a process failure) MPICH2 will return
   an error, and further communication to that process is not
   possible.  However, communication with other processes will still
   proceed normally.  Note, however, that the behavior collective
   operations on communicators containing the failed process is
   undefined, and may give incorrect results or hang some processes.

 # OVERALL: Experimental support for inter-library dependencies.

 # PM/PMI: Hydra is now the default process management framework
   replacing MPD.

 # PM/PMI: Added dynamic process support for Hydra.

 # PM/PMI: Added support for LSF, SGE and POE in Hydra.

 # PM/PMI: Added support for CPU and memory/cache topology aware
   process-core binding.

 # DEBUGGER: Improved support and bug fixes in the Totalview support.

 # Build system: Replaced F90/F90FLAGS by FC/FCFLAGS. F90/F90FLAGS are
   not longer supported in the configure.

 # Multi-compiler support: On systems where C compiler that is used to
   build mpich2 libraries supports multiple weak symbols and multiple aliases,
   the Fortran binding built in the mpich2 libraries can handle different
   Fortran compilers (than the one used to build mpich2).  Details in README.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r5762:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.3

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.3?action=follow_copy&rev=HEAD&stop_rev=5762&mode=follow_copy
2010-12-17 02:47:18 +00:00
asau
dfc6889736 "fortran" -> "fortran77" except where it is clear that it isn't F77.
"fortran" is alias of "fortran77" for now, but it will change later.
2010-07-30 10:36:22 +00:00
obache
8f22f22446 exactly disable to build with java, or result in PLIST mismatch. 2010-05-28 12:15:42 +00:00
asau
bd5d527473 Update to MPICH2 1.2.1p1.
This is primarily a bug fix release that fixes several issues on
PowerPC systems, build system bugs, and the MPD process manager.
2010-05-17 18:27:15 +00:00
joerg
3a06eb96bf Bump revision for PYTHON_VERSION_DEFAULT change. 2010-02-10 19:17:31 +00:00
asau
a102105a66 DragonFly build fix: treat DragonFly the same way as FreeBSD.
Catched by bulk builds, tested by Stathis Kamperis.
2010-01-12 20:42:16 +00:00
asau
5fea2e3dc6 Update to MPICH2 1.2.1.
===============================================================================
                               Changes in 1.2.1
===============================================================================

 # OVERALL: Improved support for fine-grained multithreading.

 # OVERALL: Improved integration with Valgrind for debugging builds of MPICH2.

 # PM/PMI: Initial support for hwloc process-core binding library in
   Hydra.

 # PM/PMI: Updates to the PMI-2 code to match the PMI-2 API and
   wire-protocol draft.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r5425:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.2.1

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.2.1?action=follow_copy&rev=HEAD&stop_rev=5425&mode=follow_copy


===============================================================================
                               Changes in 1.2
===============================================================================

 # OVERALL: Support for MPI-2.2

 # OVERALL: Several fixes to Nemesis/MX.

 # WINDOWS: Performance improvements to Nemesis/windows.

 # PM/PMI: Scalability and performance improvements to Hydra using
   PMI-1.1 process-mapping features.

 # PM/PMI: Support for process-binding for hyperthreading enabled
   systems in Hydra.

 # PM/PMI: Initial support for PBS as a resource management kernel in
   Hydra.

 # PM/PMI: PMI2 client code is now officially included in the release.

 # TEST SUITE: Support to run the MPICH2 test suite through valgrind.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r5025:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.2

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.2?action=follow_copy&rev=HEAD&stop_rev=5025&mode=follow_copy


===============================================================================
                               Changes in 1.1.1p1
===============================================================================

 - OVERALL: Fixed an invalid read in the dataloop code for zero count types.

 - OVERALL: Fixed several bugs in ch3:nemesis:mx (tickets #744,#760;
   also change r5126).

 - BUILD SYSTEM: Several fixes for functionality broken in 1.1.1 release,
   including MPICH2LIB_xFLAGS and extra libraries living in $LIBS instead of
   $LDFLAGS.  Also, '-lpthread' should no longer be duplicated in link lines.

 - BUILD SYSTEM: MPICH2 shared libraries are now compatible with glibc versioned
   symbols on Linux, such as those present in the MX shared libraries.

 - BUILD SYSTEM: Minor tweaks to improve compilation under the nvcc CUDA
   compiler.

 - PM/PMI: Fix mpd incompatibility with python2.3 introduced in mpich2-1.1.1.

 - PM/PMI: Several fixes to hydra, including memory leak fixes and process
   binding issues.

 - TEST SUITE: Correct invalid arguments in the coll2 and coll3 tests.

 - Several other minor bug fixes, memory leak fixes, and code cleanup.  A full
   list of changes is available using:

     svn log -r5032:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1.1p1

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1.1p1?action=follow_copy&rev=HEAD&stop_rev=5032&mode=follow_copy


===============================================================================
                               Changes in 1.1.1
===============================================================================

 # OVERALL: Improved support for Boost MPI.

 # PM/PMI: Significantly improved time taken by MPI_Init with Nemesis and MPD on
   large numbers of processes.

 # PM/PMI: Improved support for hybrid MPI-UPC program launching with
   Hydra.

 # PM/PMI: Improved support for process-core binding with Hydra.

 # PM/PMI: Preliminary support for PMI-2. Currently supported only
   with Hydra.

 # Many other bug fixes, memory leak fixes and code cleanup. A full
   list of changes is available using:

  svn log -r4655:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1.1

  ... or at the following link:

  https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1.1?action=follow_copy&rev=HEAD&stop_rev=4655&mode=follow_copy


===============================================================================
                               Changes in 1.1
===============================================================================

- OVERALL: Added MPI 2.1 support.

- OVERALL: Nemesis is now the default configuration channel with a
  completely new TCP communication module.

- OVERALL: Windows support for nemesis.

- OVERALL: Added a new Myrinet MX network module for nemesis.

- OVERALL: Initial support for shared-memory aware collective
  communication operations.  Currently MPI_Bcast, MPI_Reduce, MPI_Allreduce,
  and MPI_Scan.

- OVERALL: Improved handling of MPI Attributes.

- OVERALL: Support for BlueGene/P through the DCMF library (thanks to
  IBM for the patch).

- OVERALL: Experimental support for fine-grained multithreading

- OVERALL: Added dynamic processes support for Nemesis.

- OVERALL: Added automatic as well as statically runtime configurable
  receive timeout variation for MPD (thanks to OSU for the patch).

- OVERALL: Improved performance for MPI_Allgatherv, MPI_Gatherv, and MPI_Alltoall.

- PM/PMI: Initial support for the new Hydra process management
  framework (current support is for ssh, rsh, fork and a preliminary
  version of slurm).

- ROMIO: Added support for MPI_Type_create_resized and
  MPI_Type_create_indexed_block datatypes in ROMIO.

- ROMIO: Optimized Lustre ADIO driver (thanks to Weikuan Yu for
  initial work and Sun for further improvements).

- Many other bug fixes, memory leak fixes and code cleanup. A full
  list of changes is available using:

  svn log -r813:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1

  ... or at the following link:

  https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1?action=follow_copy&rev=HEAD&stop_rev=813&mode=follow_copy
2009-12-13 18:38:10 +00:00
asau
6754aacfb8 Follow f2c/libf2c split: bump revision of all packages
that list Fortran in used languages.
2009-12-03 13:06:51 +00:00
joerg
d289453e83 Remove @dirrm entries from PLISTs 2009-06-14 18:10:40 +00:00
joerg
2d1ba244e9 Simply and speed up buildlink3.mk files and processing.
This changes the buildlink3.mk files to use an include guard for the
recursive include. The use of BUILDLINK_DEPTH, BUILDLINK_DEPENDS,
BUILDLINK_PACKAGES and BUILDLINK_ORDER is handled by a single new
variable BUILDLINK_TREE. Each buildlink3.mk file adds a pair of
enter/exit marker, which can be used to reconstruct the tree and
to determine first level includes. Avoiding := for large variables
(BUILDLINK_ORDER) speeds up parse time as += has linear complexity.
The include guard reduces system time by avoiding reading files over and
over again. For complex packages this reduces both %user and %sys time to
half of the former time.
2009-03-20 19:23:50 +00:00
joerg
3c645bb7fc Switch to Python 2.5 as default. Bump revision of all packages that have
changed runtime dependencies now.
2009-02-09 22:56:21 +00:00
obache
af6c0740c7 Update MPICH2 to 1.0.8, maintainer update request by PR 40239.
Changes since 1.0.7:
- Added support for MPI 2.1
- Added support for MPI_Type_create_resized and
  MPI_Type_create_indexed_block datatypes in ROMIO.
- Bug fixes, memory leak fixes and code cleanup.
2008-12-21 11:41:01 +00:00
obache
e2f7ed377b Add missing dependency on X11. Based on maintainer's PR 39107.
Fixes build failure with X11_TYPE=native.

While here, bin/mpdroot marked as special perms.

Bump PKGREVISION.
2008-07-11 01:57:00 +00:00
tnn
72506526b4 prune wip reference 2008-05-29 20:27:47 +00:00
tnn
8112a86e60 Update to mpich2-1.0.7. From pkgsrc-wip, contributed by Aleksej Saushev.
MPICH2 is an all-new implementation of MPI from the group at Argonne
National Laboratory.  It shares many goals with the original MPICH but
no actual code.  It is a portable, high-performance implementation of
the entire MPI-2 standard.  This release has all MPI-2 functions and
features required by the standard with the exception of support for the
"external32" portable I/O format.
2008-05-29 20:25:53 +00:00
joerg
3d8ef5a52d Second round of explicit pax dependencies. As reminded by tnn@,
many packages used to use ${PAX}. Use the common way of directly calling
pax, it is created as tool after all.
2008-05-26 02:13:14 +00:00
wiz
a7c8e0cd61 Reset maintainer on his request. 2008-01-19 09:16:17 +00:00
gdt
e8300a2db9 add MAKE_JOBS_SAFE=no 2007-07-02 19:21:14 +00:00
joerg
422c673bbd Modular Xorg support. 2007-01-14 09:03:09 +00:00
rillig
be6182c0b7 Fixed PKGMANDIR and minor file permissions. 2007-01-07 12:02:43 +00:00
rillig
2829e658f2 Mechanically replaced man/* with ${PKGMANDIR}/* in the definition of
INSTALLATION_DIRS, as well as all occurrences of ${PREFIX}/man with
${PREFIX}/${PKGMANDIR}.

Fixes PR 35265, although I did not use the patch provided therein.
2007-01-07 09:13:46 +00:00
obache
d745dd4de7 Fix HOMEPAGE.
On August 25, 2006, MCS began revamping its web presence.
2006-12-22 13:24:16 +00:00
jlam
c16221a4db Change the format of BUILDLINK_ORDER to contain depth information as well,
and add a new helper target and script, "show-buildlink3", that outputs
a listing of the buildlink3.mk files included as well as the depth at
which they are included.

For example, "make show-buildlink3" in fonts/Xft2 displays:

	zlib
	fontconfig
	    iconv
	    zlib
	    freetype2
	    expat
	freetype2
	Xrender
	    renderproto
2006-07-08 23:10:35 +00:00
jlam
9430e49307 Track information in a new variable BUILDLINK_ORDER that informs us
of the order in which buildlink3.mk files are (recursively) included
by a package Makefile.
2006-07-08 22:38:58 +00:00
joerg
73bb80dd81 Also include protofix.h in PLIST. Bump revision. 2006-05-18 14:26:48 +00:00
joerg
5285bddaa9 First step into making mpi-ch fully work with CHECK_FILES.
Also annotate use of C++ and Fortran. Bump revision.
2006-05-16 22:01:18 +00:00
rillig
bd2cff67a2 Fixed pkglint warnings. The documentation files are installed in
share/doc instead of share/doc/html. Bumped PKGREVISION.
2006-04-13 01:20:32 +00:00
rillig
96fc47c14f Aligned the last line of the buildlink3.mk files with the first line, so
that they look nicer.
2006-04-12 10:26:59 +00:00
reed
5abef9be14 Over 1200 files touched but no revisions bumped :)
RECOMMENDED is removed. It becomes ABI_DEPENDS.

BUILDLINK_RECOMMENDED.foo becomes BUILDLINK_ABI_DEPENDS.foo.

BUILDLINK_DEPENDS.foo becomes BUILDLINK_API_DEPENDS.foo.

BUILDLINK_DEPENDS does not change.

IGNORE_RECOMMENDED (which defaulted to "no") becomes USE_ABI_DEPENDS
which defaults to "yes".

Added to obsolete.mk checking for IGNORE_RECOMMENDED.

I did not manually go through and fix any aesthetic tab/spacing issues.

I have tested the above patch on DragonFly building and packaging
subversion and pkglint and their many dependencies.

I have also tested USE_ABI_DEPENDS=no on my NetBSD workstation (where I
have used IGNORE_RECOMMENDED for a long time). I have been an active user
of IGNORE_RECOMMENDED since it was available.

As suggested, I removed the documentation sentences suggesting bumping for
"security" issues.

As discussed on tech-pkg.

I will commit to revbump, pkglint, pkg_install, createbuildlink separately.

Note that if you use wip, it will fail!  I will commit to pkgsrc-wip
later (within day).
2006-04-06 06:21:32 +00:00
kristerw
32928b1928 Do not use ${INSTALL} to copy files into ${WRKSRC} -- this is wrong for
e.g. NetBSD 1.6 whose /usr/bin/install does not set -c by default.

${CP} is much better if you just want to copy a file...
2006-03-18 18:38:36 +00:00
joerg
b147230967 Add DragonFly support. 2006-03-14 01:10:49 +00:00
joerg
5911def816 Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
garbled
358bf07663 Address PR pkg/30506 :
Change pkg to use tk instead of tk83.  I found no compelling reason for
it to still be dependant on the old version of tk.
Change the HOMEPAGE, as the old one no longer works.
Tested install, the pkg seems to install stuff properly now.. I believe
the PR should now be addressed fully.
2005-12-30 04:16:17 +00:00
rillig
579e977969 Ran "pkglint --autofix", which corrected some of the quoting issues in
CONFIGURE_ARGS.
2005-12-05 23:55:01 +00:00
rillig
b71a1d488b Fixed pkglint warnings. The warnings are mostly quoting issues, for
example MAKE_ENV+=FOO=${BAR} is changed to MAKE_ENV+=FOO=${BAR:Q}. Some
other changes are outlined in

    http://mail-index.netbsd.org/tech-pkg/2005/12/02/0034.html
2005-12-05 20:49:47 +00:00
abs
ee9906d198 Fix NetBSD statvfs check to be >= 299000900 not >= 200040000
No pkgrevision bumps needed.
2005-09-06 08:10:57 +00:00
jlam
3e474a90d8 Get rid of USE_PERL5. The new way to express needing the Perl executable
around at either build-time or at run-time is:

	USE_TOOLS+=	perl		# build-time
	USE_TOOLS+=	perl:run	# run-time

Also remove some places where perl5/buildlink3.mk was being included
by a package Makefile, but all that the package wanted was the Perl
executable.
2005-07-16 01:19:06 +00:00
kristerw
cd9d53633a Prevent paths to the build directories from being included in the package.
Bump PKGREVISION.
2005-07-12 19:41:43 +00:00
wiz
14d5638070 Move inclusion of tk83/bl3.mk above inclusion of bsd.pkg.mk.
Probably fixes bulk build problem.
2005-06-11 11:22:21 +00:00
jlam
95fd1f6ec9 Massive cleanup of buildlink3.mk and builtin.mk files in pkgsrc.
Several changes are involved since they are all interrelated.  These
changes affect about 1000 files.

The first major change is rewriting bsd.builtin.mk as well as all of
the builtin.mk files to follow the new example in bsd.builtin.mk.
The loop to include all of the builtin.mk files needed by the package
is moved from bsd.builtin.mk and into bsd.buildlink3.mk.  bsd.builtin.mk
is now included by each of the individual builtin.mk files and provides
some common logic for all of the builtin.mk files.  Currently, this
includes the computation for whether the native or pkgsrc version of
the package is preferred.  This causes USE_BUILTIN.* to be correctly
set when one builtin.mk file includes another.

The second major change is teach the builtin.mk files to consider
files under ${LOCALBASE} to be from pkgsrc-controlled packages.  Most
of the builtin.mk files test for the presence of built-in software by
checking for the existence of certain files, e.g. <pthread.h>, and we
now assume that if that file is under ${LOCALBASE}, then it must be
from pkgsrc.  This modification is a nod toward LOCALBASE=/usr.  The
exceptions to this new check are the X11 distribution packages, which
are handled specially as noted below.

The third major change is providing builtin.mk and version.mk files
for each of the X11 distribution packages in pkgsrc.  The builtin.mk
file can detect whether the native X11 distribution is the same as
the one provided by pkgsrc, and the version.mk file computes the
version of the X11 distribution package, whether it's built-in or not.

The fourth major change is that the buildlink3.mk files for X11 packages
that install parts which are part of X11 distribution packages, e.g.
Xpm, Xcursor, etc., now use imake to query the X11 distribution for
whether the software is already provided by the X11 distribution.
This is more accurate than grepping for a symbol name in the imake
config files.  Using imake required sprinkling various builtin-imake.mk
helper files into pkgsrc directories.  These files are used as input
to imake since imake can't use stdin for that purpose.

The fifth major change is in how packages note that they use X11.
Instead of setting USE_X11, package Makefiles should now include
x11.buildlink3.mk instead.  This causes the X11 package buildlink3
and builtin logic to be executed at the correct place for buildlink3.mk
and builtin.mk files that previously set USE_X11, and fixes packages
that relied on buildlink3.mk files to implicitly note that X11 is
needed.  Package buildlink3.mk should also include x11.buildlink3.mk
when linking against the package libraries requires also linking
against the X11 libraries.  Where it was obvious, redundant inclusions
of x11.buildlink3.mk have been removed.
2005-06-01 18:02:37 +00:00
wiz
13f84fb380 Default to build dependency, since this package
only installs static libraries.
2005-04-05 11:01:49 +00:00
jschauma
7c6a9b9f04 Make this work on IRIX.
Other non-NetBSD OS probably want to check this, too, since so far we've
always built with --with-arch=netbsd...
2005-03-07 02:08:37 +00:00
wiz
bb872d8ba0 Sort. 2005-03-03 12:07:52 +00:00
garbled
12392dda0b update mpich to 1.2.6, with most work provided by Phil Nelson in PR pkg/27273
with some minor PLIST and etc fixes by me.
2005-03-03 12:01:30 +00:00
agc
9c33078522 Add RMD160 digests 2005-02-24 12:19:55 +00:00
jlam
b6b853727d Nuke USE_FORTRAN and bring the f2c handling within the mk/compiler
framework.  The list of changes include:

  * Modify compiler.mk so that "c" is always prepended to USE_LANGUAGES,
    so we no longer need to say it in package Makefiles.  Packages
    should now append to USE_LANGUAGES instead of setting it.

  * Create mk/compiler/f2c.mk which implements another pseudo-compiler
    "f2c" that may be used with any C compiler backend, e.g.

	PKGSRC_COMPILER= f2c ccache gcc

  * Teach the various "real" compiler files, e.g., sunpro.mk, mipspro.mk,
    etc., to use f2c if the native Fortran compiler isn't present.

Packages that use Fortran should now simply include the line:

	USE_LANGUAGES+=	fortran

in the package Makefile.
2005-01-12 15:31:58 +00:00
wiz
6e02d7ee41 Rename ALL_TARGET to BUILD_TARGET for consistency with other *_TARGETs.
Suggested by Roland Illig, ok'd by various.
2004-12-03 15:14:50 +00:00
tv
c487cb967a Libtool fix for PR pkg/26633, and other issues. Update libtool to 1.5.10
in the process.  (More information on tech-pkg.)

Bump PKGREVISION and BUILDLINK_DEPENDS of all packages using libtool and
installing .la files.

Bump PKGREVISION (only) of all packages depending directly on the above
via a buildlink3 include.
2004-10-03 00:12:51 +00:00
drochner
fb703a15b0 make this build on -current again (statfs->statvfs) 2004-06-24 17:31:43 +00:00
kristerw
7510202d93 Depend on security/openssh instead of security/ssh for machines that
do not have /usr/bin/ssh.
2004-05-31 22:13:16 +00:00