Commit graph

2567 commits

Author SHA1 Message Date
asau
b5abdf9df9 Update to muParser 1.32
Changes in muParser 1.32
------------------------

  Changes:
   * "example3" renamed to "example2"
   * Project/Makefiles files are now provided for:
           - msvc2003
           - msvc2005
           - msvc2008
           - watcom   (makefile)
           - mingw    (makefile)
           - bcc      (makefile)
   * Project files for borland cpp builder were removed

  New features:
   * Added function returning muparsers version number
   * Added function for resetting the locale

  Bugfixes:
   * Changes example1 in order to fix issues with irritating memory leak reports.
     Added conditional code for memory leak detection with MSVC in example1.
     (see: http://www.codeproject.com/KB/recipes/FastMathParser.aspx?msg=3286367#xx3286367xx)
   * Fixed some warnings for gcc


Changes in muParser 1.31cp
--------------------------

  Changes:
   * Archive structure changed
   * C# wrapper added
   * Fixed issued that prevented compiling with VS2010 Beta2
2010-08-11 20:33:19 +00:00
asau
2eaf92fc91 Update to Newmat11
Contributed by Kamel Derouiche via PR pkg/43741

Changes in this version:

It works with Borland Builder version 6, 8;
Microsoft Visual C++ 6,7,8; Open Watcom 1.7a;
Gnu version 3, 4 and Intel for Windows & Linux compilers 9, 10.

Options and work-arounds for older compilers are being removed.

You can enter values from an integer array with statements like

  Matrix A(3,2); int a[] = { 11,12,21,22,31,33 };  A << a;

There is a new matrix type SquareMatrix. You can use this where
you know a matrix is square. The only place where the information
that a matrix is used is in the Kronecker product KP(A,B).
If A is band and B is any square matrix type (i.e. type SquareMatrix
or band, triangular, symmetric or diagonal) the result is band.
If B is type Matrix then the result is of type Matrix.
Apart from this it may be worth using the SquareMatrix type to
improve readability of a program and to make sure that a matrix
that is intended to be square really is square.

There is a new routine for carrying out cross products of
ColumnVectors or RowVectors of length 3 and new routines for
updating a triangular matrix derived from a Cholesky decomposition.

Interfacing with old C functions involving one and two
dimensional arrays is simplified.

Additional QR functions, extend_orthogonal function.

Lower-case versions of functions.

You can use the manipulators scientific and fixed in the matrix
output expressions.
2010-08-11 20:06:25 +00:00
drochner
ecc5605a7a update to 0.6.7, from Kamel Derouiche per PR pkg/43731
changes:
-implement visual factorint()
-implement symarray(): numpy array of sympy symbols
-misc fixes and improvements
2010-08-11 13:36:48 +00:00
drochner
016bd9620a update to 0.15, from Kamel Derouiche per PR pkg/43730
many fixes and improvements, too much to list here
2010-08-10 18:04:30 +00:00
drochner
e92b3c8749 +py-gmpy 2010-08-10 18:01:21 +00:00
drochner
8e522ac7e3 add py-gmpy-1.12, a Python wrapper for math/gmp, from Kamel Derouiche
per pkgsrc-wip
2010-08-10 17:59:00 +00:00
drochner
729b79e27b update to 0.7.2 which gives it a MASTER_SITE and a distfile again,
I don't know of other changes
from Kamel Derouiche per PR pkg/43735
2010-08-10 12:35:34 +00:00
drochner
49f5524c29 update to 1.10.8
changes:
-Add new Excel and Openformula units ("pica" and "picapt")
-New functions DATE2HDATE, DATE2HDATE_HEB and DATE2JULIAN
-UI improvements
-bugfixes
2010-08-05 18:43:14 +00:00
seb
753738a860 Add & enable p5-Math-Base36 2010-08-05 00:12:59 +00:00
seb
fcfe671029 Initial import of p5-Math-Base36 version 0.07 in the NetBSD Packages
Collection.

The Perl 5 module Math::Base36 converts to and from Base36 numbers
(0..9 - A..Z).
2010-08-05 00:12:28 +00:00
dholland
f992c954a1 bump PKGREVISION for yesterday's fix (PR 42507) 2010-08-02 09:01:01 +00:00
sno
6d6c9ac4f0 Updating math/p5-Set-Infinite from 0.63nb1 to 0.65
pkgsrc changes:
- add license definition

Upstream changes:
0.65   2010-04-26
- documentation fix

0.64   2010-04-26
- s/simmetric/symmetric/
  reported by Richard Jelinek
2010-08-01 21:05:37 +00:00
sno
27c6b375e9 Updating math/p5-Excel-Template from 0.31 to 0.32
pkgsrc changes:
- adjust dependencies
- remove executable file bits from perl modules
- adjust installer type

Upstream changes:
0.32 Mon Jul  5 18:58:05 CEST 2010
    Official release for development release 0.31_1

0.31_1 Mon Jun 28 16:51:44 CEST 2010
    - Add autofilter to worksheet
    - Swichting to Module::Install
2010-08-01 21:02:36 +00:00
sno
c8a8fc135d Updating math/p5-Spreadsheet-Read from 0.39 to 0.40
pkgsrc changes:
- add license definition
- adjust dependencies

Upstream changes:
0.40	Wed 31 Mar 2010
    - Default option for clip fixed (RT#56151 - Alan James)
2010-08-01 20:54:34 +00:00
sno
02bb4022d8 Updating math/p5-Math-BaseCnv from 1.4.75 to 1.6
pkgsrc changes:
- add license definition
- adjust regex for removing instant time point in version number

Upstream changes:
    - 1.6.A6FGHKE Tue Jun 15 16:17:20:14 2010
      * bumped minor version number so they'll keep ascending (without PT
      comprehension)
2010-08-01 20:26:44 +00:00
dholland
82ff334787 Additional INSTALLATION_DIRS entry from Robert Elz in PR 42507.
While here, fix typo in COMMENT.
2010-07-31 22:19:16 +00:00
asau
dfc6889736 "fortran" -> "fortran77" except where it is clear that it isn't F77.
"fortran" is alias of "fortran77" for now, but it will change later.
2010-07-30 10:36:22 +00:00
asau
0fec671a9f + mpcomplex 2010-07-27 17:15:09 +00:00
asau
026c5d619f Import MPC (multiprecision complex arithmetic library) version 0.8.2
as math/mpcomplex.
Packaged by Marko Schuetz for pkgsrc-wip.

MPC is a C library for the arithmetic of complex numbers with
arbitrarily high precision and correct rounding of the result.
It is built upon and follows the same principles as MPFR.
2010-07-27 17:09:45 +00:00
drochner
f32131cd7d update to 1.10.7
changes:
-Improve function syntax and formula guru tooltips
-Read HTML files with nested tables
-misc fixes
2010-07-20 12:15:43 +00:00
joerg
74122dc4a0 py-cython dependency doesn't support 2.4. 2010-07-17 18:13:08 +00:00
drochner
2b92df22ae update to 2.2
changes:
-new compressor called Blosc (speed-up)
-A new `tables.Expr` module (based on Numexpr) that allows to do
 persistent, on-disk computations on many algebraic operations.
-Support for HDF5 hard links, soft links and automatic external links
-Suport for 'fancy' indexing
-bugfixes
2010-07-16 12:17:59 +00:00
drochner
94f3e5cdae +py-numexpr 2010-07-16 12:14:16 +00:00
drochner
6d481a51cc add py-numexpr-1.3.1, a numerical expression evaluator for NumPy 2010-07-16 12:12:17 +00:00
asau
d11a9560fe Bump revision after math/mpfr update. 2010-07-15 21:35:10 +00:00
asau
8d40396527 Update MPFR to version 3.0.0.
Contributed by Stathis Kamperis on IRC.

Changes from versions 2.4.* to version 3.0.0:

- The "boudin aux pommes" release.
- MPFR 3.0.0 is binary incompatible with previous versions but (almost)
  API compatible.  More precisely the obsolete functions mpfr_random
  and mpfr_random2 have been removed, the meaning of the return type
  of the function mpfr_get_f has changed, and the return type of the
  function mpfr_get_z is now int instead of void.  In practice, this
  should not break any existing code.
- MPFR is now distributed under the GNU Lesser General Public License
  version 3 or later (LGPL v3+).
- Rounding modes GMP_RNDx are now MPFR_RNDx (GMP_RNDx kept for
  compatibility).
- A new rounding mode (MPFR_RNDA) is available to round away from zero.
- The rounding mode type is now mpfr_rnd_t (as in previous versions,
  both mpfr_rnd_t and mp_rnd_t are accepted, but mp_rnd_t may be
  removed in the future).
- The precision type is now mpfr_prec_t (as in previous versions, both
  mpfr_prec_t and mp_prec_t are accepted, but mp_prec_t may be removed
  in the future) and it is now signed (it was unsigned in MPFR 2.*, but
  this was not documented). In practice, this change should not affect
  existing code that assumed nothing on the precision type.
- MPFR now has its own exponent type mpfr_exp_t, which is currently
  the same as GMP's mp_exp_t.
- Functions mpfr_random and mpfr_random2 have been removed.
- mpfr_get_f and mpfr_get_z now return a ternary value.
- mpfr_strtofr now accepts bases from 37 to 62.
- mpfr_custom_get_mantissa was renamed to mpfr_custom_get_significand
  (mpfr_custom_get_mantissa is still available via a #define).
- Functions mpfr_get_si, mpfr_get_ui, mpfr_get_sj, mpfr_get_uj,
  mpfr_get_z and mpfr_get_z_2exp no longer have cases with undefined
  behavior; in these cases, the behavior is now specified, and in
  particular, the erange flag is set.
- New functions mpfr_buildopt_tls_p and mpfr_buildopt_decimal_p giving
  information about options used at MPFR build time.
- New function mpfr_regular_p.
- New function mpfr_set_zero.
- New function mpfr_digamma.
- New function mpfr_ai (incomplete, experimental).
- New functions mpfr_set_flt and mpfr_get_flt to convert from/to the
  float type.
- New function mpfr_urandom.
- New function mpfr_set_z_2exp (companion to mpfr_get_z_2exp, which
  was renamed from mpfr_get_z_exp in previous versions).
- Speed improvement for large operands in the trigonometric functions
  (mpfr_sin, mpfr_cos, mpfr_tan, mpfr_sin_cos): speedup of about 2.5
  for 10^5 digits, of about 5 for 10^6 digits.
- Speed improvement for large operands of the inverse trigonometric
  functions (arcsin, arccos, arctan): about 2 for 10^3 digits, up to
  2.7 for 10^6 digits.
- Some documentation files are installed in $docdir.
- The detection of a GMP build directory (more precisely, the internal
  header files of GMP) was previously done separately from the use of
  the --with-gmp-build configure option. This was not consistent with
  the documentation and with other parts of the configure script. So,
  as of MPFR 3.0.0, the internal header files of GMP are now used if
  and only if the --with-gmp-build configure option is given.
- The configure script recognizes some extra "long double" formats
  (double big endian, double little endian, double-double big endian).
- MPFR manual: added "API Compatibility" section.
- Test coverage: 97.1% lines of code.
- Bug fixes.
2010-07-15 20:30:40 +00:00
sbd
d823d74afa Recursive PKGREVISION bump for the net/mDNSResponder update 2010-07-14 11:11:13 +00:00
adam
c244b3d7f1 Changes 4.44:
The following suffixes for variables and constraints were
implemented in the MathProg language:

.lb     (lower bound),
.ub     (upper bound),
.status (status in the solution),
.val    (primal value), and
.dual   (dual value).

Now the MathProg language allows comment records (marked by
'#' in the very first position) in CSV data files read with the
table statements. Note that the comment records may appear only
in the beginning of a CSV data file.

The API routine glp_cpp to solve the Critical Path Problem was
added and documented.
2010-07-13 06:46:56 +00:00
drochner
7b5b22bcf1 update to 5.30.2
changes: translation updates
2010-07-06 15:39:35 +00:00
asau
1ed14b8ecb Update to FriCAS 1.1.0
Notable changes (compared to version 1.0.9) include:

- New domains and packages: VectorSpaceBasis domain,
  DirichletRing domain, 3D graphic output in Wavefront .obj format,
  specialized machine precision numeric vectors and matrices (faster
  then general vectors and matrices), Html output.

- Support Clifford algebras corresponding to non-diagonal matrix,
  added new operations.

- 'normalize' now tries to simplify logarithms of algebraic constants.

- New functions: Fresnel integrals, carmichaelLambda.

- Speed improvements: several polynomial operations are faster,
  faster multiplication in Ore algebras, faster computation of
  strong generating set for permutation groups, faster coercions.

- Several improvements to the guessing package (in particular new
  option Somos for restricting attention to Somos-like
  sequences

Bug fixes, in particular:

- FriCAS can now compute multiplicative inverse of a power series
  with constant term not equal to 1.

- Fixed a problem with passing interpreter functions to algebra.

- Two bugs causing crashes in HyperDoc interface are fixed.

- FriCAS now ignores sign when deciding if number is prime.

- A failing coercion that used to crash FriCAS is now detected.

- 'has' test sometimes gave wrong result.

- Plotting fixes.
2010-07-05 22:41:16 +00:00
adam
d5a01f60ca Changes 2.11.1:
* R CMD INSTALL checks if dependent packages are available early on
* in the installation of source packages, thereby giving clearer
  error messages.
* R CMD INSTALL --build now names the file in the format used
  for Mac OS X binary files on that platform.
* BIC() in package stats4 now also works with multiple fitted models,
  analogously to AIC().
* Use of file extension .C for C++ code in packages is now
  deprecated: it has caused problems for some 'make's on
  case-insensitive file systems (although it currently works
  with the recommended toolkits).
* The C function mkCharLenCE now no longer reads past 'len' bytes
  (unlikely to be a problem except in user code).
* On systems without any default LD_LIBRARY_PATH (not even
  /usr/local/lib), [DY]LIB_LIBRARY_PATH is now set without a trailing colon.
* More efficient utf8ToInt() on long multi-byte strings with
  many multi-byte characters.
* aggregate.ts() gave platform-depedent results due to rounding
  error for ndeltat != 1.
* package.skeleton() sometimes failed to fix filenames for .R or
  .Rd files to start with an alphanumeric.
2010-07-03 07:25:57 +00:00
joerg
39935a788a Fix configure handling of Magick option 2010-06-27 17:52:56 +00:00
obache
ec98f344d0 Adjust patch to upstream commit. 2010-06-18 01:53:47 +00:00
obache
965e80d4b5 Fixes build failure on NetBSD-5.0.2.
Use fgets(3) instead of getline(3).
2010-06-17 08:56:46 +00:00
obache
ae3f380235 Update HOMEPAGE from Old(pre-GNOME, caltool) one. 2010-06-17 07:45:59 +00:00
obache
58b0bc0c53 Improve DESCR,
remove "From the README" and update from the README without version number.
2010-06-17 07:33:47 +00:00
obache
4ea06e79bb Require gtk2+>=2.18.0 2010-06-17 07:21:29 +00:00
drochner
5392854bab update to 1.10.5
changes:
-bugfixes
-better tests
-Include version number in HTML export
-Improve page setup dialog
-Add non-linear solver
2010-06-15 21:16:20 +00:00
drochner
5bb327a2ce update to 5.30.1
This switches to the gnome-2.30 release branch
2010-06-15 21:09:31 +00:00
wiz
f45a09f8f6 PKGREVISION bump for png-1.4.x shlib change.
(missed those and *emacs* the first time round because they pull
in their png dependencies via default-on options; they were included
in the test bulk build though)
2010-06-14 15:33:12 +00:00
wiz
e8d8834f6a Bump PKGREVISION for libpng shlib name change.
Also add some patches to remove use of deprecated symbols and fix other
problems when looking for or compiling against libpng-1.4.x.
2010-06-13 22:43:46 +00:00
markd
2d690806fc Update py-rpy to 2.1.3
Works with recent R and recent python.
2010-06-09 21:04:26 +00:00
markd
a2fb514bba Update to scipy 0.7.2
SciPy 0.7.2 is a bug-fix release with no new features compared to 0.7.1. The
only change is that all C sources from Cython code have been regenerated with
Cython 0.12.1. This fixes the incompatibility between binaries of SciPy 0.7.1
and NumPy 1.4.

SciPy 0.7.1 is a bug-fix release with no new features compared to 0.7.0.
2010-06-06 02:37:08 +00:00
adam
14f9b6b07c Added graphicsmagick as an option, fixing PR#43218 2010-06-02 18:35:38 +00:00
obache
37b7b1af4e Update py-Scientific to 2.8.
Based on PR#43282 by Wen Heping.

2.7.9 --> 2.7.10
----------------

Bug fixes:

- Removed all occurrences of "as" as a variable name for compatibility
  with Python 2.6.

- Installation without the netCDF module did not work.

Improvements:

- Vector.dyadicProduct() was replaced by a more efficient implementation.

- Scientific.IO.PDB: Atom objects now have a parent attribute whose
  value is the containing group.


2.7.8 --> 2.7.9
---------------

License change: ScientificPython is now distributed under the
CeCILL-C license, which is an adaptation of the LGPL to French
law. The previously used CeCILL license, similar to the GPL, was
considered too restrictive.

Bug fixes:

- MPI interfaces did not work correctly with NumPy and/or Python 2.5.

Improvements:

- Compilation script for mpipython works around a Python configuration
  bug under MacOS X.
- Docstrings have been cleaned up.

2.7.7 --> 2.7.8
---------------

Bug fixes:

- Due to a typo in Scientific.IO.PDBSpaceGroups, some space group
  names were not found in the space group table.

Improvements:

- Vector objects can now be multiplied with NumPy scalar objects
  (which is what you get when extracting numbers from NumPy
  arrays). Due to the way NumPy scalars handle multiplication, the
  result used to be an array rather than a Vector, which caused
  various applications to crash.

- The build procedure under Windows has been improved. It can
  generate a binary installer that includes the netCDF DLL,
  making ScientificPython independent of a netCDF installation.

2.7.6 --> 2.7.7
---------------

Bug fixes:

- Installation on Windows didn't work because the Unix maths libraries
  don't exist there.


Improvements:

- InterpolatingFunction and TensorField objects can represent
  periodic functions/fields.

- DistributedComputing: the watchdog period of slave processes is now
  a user-definable parameter.

- PDBSpaceGroups was simplified, making it shorter and faster to load.

- Scientific.N contains the array type object in the variable array_type.
  This makes it possible to write Pyrex modules using arrays in such a
  way that they always use the numeric module for which ScientificPython
  was compiled.


2.7.5 --> 2.7.6
---------------

Bug fixes:

- NumPy compatibility fixes.

- Pyro 3.6 compatibility fix in DistributedComputing.MasterSlave


2.7.4 --> 2.7.5
---------------

New features:

- Scaling, inversion, and shear transformations added to
  Geometry.Transformations

Improvements:

- PDB parser handles CRYST1, SCALEn and MTRIXn records
- Better identification of the Numerics package that is being used

Bug fixes:

- Scientific_affinitypropagation.c compiles with NumPy


2.7.3 --> 2.7.4
---------------

New features:

- New module Clustering.AffinityPropagation.
- New class BSP.ParRootSequence.

Bug fixes:

- Replaced float equality test in Functions.InterpolatingFunction
- Removed exception for order > 1 in Derivatives.DerivVar.__init__
- Fixed reading of non-string attributes from netCDF files.

Improvements:

- New methods getBinIndices and getBinCount in Statistics.Histogram.Histogram
- Physics.PhysicalQuantities: unit definitions added to doc string

2.7.2 --> 2.7.3
---------------

Improvements:

- Added multi-module setup for master-slave computations.
- More information available through task_manager.
- task_manager can start slave processes.

2.7.1 --> 2.7.2
---------------

Bug fixes:

- Scientific_netcdf would not compile with NumPy under Python 2.4
  because NumPy also defined Py_ssize_t.

2.7 --> 2.7.1
-------------

Improvements:

- NumPy compatibility. Scientific_netcdf was revised by hand.
  The Python code was run through numpy.oldnumeric.alter_code1 to
  identify the critical sections, which were then all handled in
  some way. It is possible that there are still incompatibilities
  of the kind that numpy.oldnumeric.alter_code1 cannot detect


2.5.12hg --> 2.7
----------------

New features:

- Subpackage Scientific.DistributedComputing for easy parallelization
  of independent tasks.

2.5.11 --> 2.5.12hg
-------------------

Bug fixes:

- VRML2 output would crash for scenes containing Line objects
- Pyrex implmentation of vector objects could crash instead of raising
  an exception in divide operations.
- Pyrex implmentation of vector objects would raise exceptions incorrectly
  under Python 2.5

Improvements:

- builds Macintosh packages with documentation and examples

2.5.10 --> 2.5.11
-----------------

Bug fixes:

- Pyrex implementation of vector objects raised exceptions in comparisons
- Pyrex implementation of vector objects did not accept negative indices
- Some object deletions during conversion to epydoc had to be reversed

Improvements:

- Two test suites

2.5.9 --> 2.5.10
----------------

Bug fixes:

- Fixed netCDF error handling

Improvements:

- Support for NumPy (not very well tested yet)
- Scientific.NumberDict more efficient

2.5.8 --> 2.5.9
---------------

Improvements:

- Scientifc.IO.NetCDF supports the new 64-bit data structures in Python 2.5
  (not yet tested on a 64-bit machine)
- Docstrings modified for use with Epydoc.

2.5.7 --> 2.5.8
---------------

Bug fixes:

- Syntax error in Scientific.IO.PDB
- Attribute deletion in netCDF file and variable objects caused a crash.

2.5.6 --> 2.5.7
----------------

Bug fixes:

- Tensor-vector multiplication was incorrect with the Pyrex implementation
  of vector objects.

2.5.5 --> 2.5.6
----------------

Bug fixes:

- Scientific.BSP.ParClass did not pass on __call__ and __getitem__
  to local class
- Scientific.BSP.ParClass: Class wrappers did not always return the right
  global object.

2.5.4 --> 2.5.5
----------------

Bug fixes:

- Scientific.IO.NetCDF.NetCDFVariable.assignValue() had incomplete error
  reporting. Some errors would not raise exceptions as required.


2.5.3 --> 2.5.4
----------------

Improvements:

- A "test" method on MPI request objects permits to check if data
  is available (thanks to Jakob Schiotz for this addition).

Bug fixes:

- The new Pyrex vector objects could not be pickled.

2.5.1 --> 2.5.3
----------------

Improvements:

- The class Scientific.Geometry.Vector has been reimplemented in Pyrex,
  yielding much faster vector operations. There is, however, the restriction
  that the vector elements must be of type "float". For the rare applications
  where this condition is not fulfilled (such as
  Scientific.Functions.Derivatives.DerivVector), the Python implementation
  remains accessible as Scientific.Geometry.VectorModule.Vector.

2.4.9 --> 2.5.1
----------------

Improvements:

- Vector and Tensor objects permit comparison with other types
  of objects (which always return False)
- Numarray can be used instead of Numeric as far as possible
  (see README for details)

2.4.7 --> 2.4.9:
----------------

Bug fixes:

- Integer array attributes caused a TypeError with recent versions of
  Numeric (that don't do silent casts from Long to Int any more).

Additions:

- Method "threeAngles" in Geometry.Transformation.Rotation.


2.4.6 --> 2.4.7:
----------------

Bug fixes:

- Scientific.BSP: alltrue() and anytrue() sometimes returned wrong results.

Additions:

- Scientific.Visualization.VMD can now correctly launch VMD under Windows
2010-05-29 03:18:54 +00:00
tnn
c135d73445 math/orpie was broken by an ocaml update three years ago and nobody stepped
up to fix it, so let's remove it for now.
2010-05-28 17:03:53 +00:00
adam
c2c2d2ae26 Changes 4.43:
* This is a maintainer release.
* `configure.ac' was changed to allow building the package under
  Mac OS and Darwin with ODBC support.
* The SQL table driver was improved to process NULL data.
* Some bugs were fixed in the LP/MIP preprocessor.

Changes 4.42:
* The new API routines were added.
* The new command-line options were added to the stand-alone solver glpsol.
2010-05-21 10:36:56 +00:00
drochner
1fef033bd6 update to 0.9.3
This switches from Qt3 to Qt4.
2010-05-20 17:48:59 +00:00
obache
3c6b07ce5f + TinySVM 2010-05-19 11:48:39 +00:00
obache
b63f1e0e91 Import TinySVM-0.09 as math/TinySVM.
TinySVM is an implementation of Support Vector Machines (SVMs) [Vapnik 95],
[Vapnik 98] for the problem of pattern recognition. Support Vector Machines is a
new generation learning algorithms based on recent advances in statistical
learning theory, and applied to large number of real-world applications, such as
text categorization, hand-written character recognition.
2010-05-19 11:47:15 +00:00