Commit graph

713 commits

Author SHA1 Message Date
wiz
ff55f4b6de py-ipyparallel: revert previous, but make py-packaging a build dependency 2022-02-13 17:19:42 +00:00
wiz
41a7b5f50f py-ipyparallel: add a missing dependency
Remove some dependencies that are not requested explicitly and pulled in
anyway.
2022-02-13 09:56:03 +00:00
adam
b452492dbf py-ipyparallel: updated to 8.2.0
8.2.0 is a small release, mostly of small bugfixes and improvements.

Changes:

`len(AsyncMapResult)` and progress ports now use the number of items in the map,
not the number of messages.

Enhancements:

- Show output prior to errors in `%%px`

Bugs fixed:

- Fix cases where engine id could be `-1` in tracebacks
- Add missing `pbs` to engine launcher entrypoints
2022-02-07 17:07:22 +00:00
adam
d99ed49f6f py-ipyparallel: added version 8.1.0
IPython Parallel (ipyparallel) is a Python package and collection of CLI
scripts for controlling clusters of IPython processes, built on the Jupyter
protocol.
2022-02-04 13:09:41 +00:00
adam
bd26a73ac3 llvm: updated to 13.0.1
13.0.1:
Bug-fix release.
2022-02-03 20:38:39 +00:00
wiz
bb579283d0 *: bump PKGREVISION for egg.mk users
They now have a tool dependency on py-setuptools instead of a DEPENDS
2022-01-04 20:53:26 +00:00
adam
b6d9bd86bc revbump for icu and libffi 2021-12-08 16:01:42 +00:00
wiz
076c938579 llvm: update llvm and friends to 13.0.0
Tested on NetBSD-current and 9.1/amd64.

Also update packages tightly coupled to llvm, if new versions are
available.

Mark creduce, include-what-you-use, and zig broken (waiting for a
new release).

Changes:

Non-comprehensive list of changes in this release

    Windows Control-flow Enforcement Technology: the -ehcontguard
    option now emits valid unwind entrypoints which are validated
    when the context is being set during exception handling.

    Flang is now included in the binary packages released by LLVM.

    The debuginfo-test project has been renamed cross-project-tests
    and is now intended for testing components from multiple
    projects, not just debug information. The new “cross-project-tests”
    name replaces “debuginfo-test” in LLVM_ENABLE_PROJECTS, and a
    new check-cross-project-tests target has been added for running
    all tests in the project. The pre-existing check-debuginfo-
    test target remains for running just the debug information
    tests. (D95339 and D96513)

Changes to the LLVM IR

    The inalloca attribute now has a mandatory type field, similar
    to byval and sret.

    The opaque pointer type ptr has been introduced. It is still
    in the process of being worked on and should not be used yet.

    Using the legacy pass manager for the optimization pipeline is
    deprecated and will be removed after LLVM 14. In the meantime,
    only minimal effort will be made to maintain the legacy pass
    manager for the optimization pipeline.

Changes to building LLVM

    The build system now supports building multiple distributions,
    so that you can e.g. have one distribution containing just
    tools and another for libraries (to enable development). See
    Multi-distribution configurations for details.

Changes to the AArch64 Backend

    Introduced assembly support for Armv9-A’s Realm Management
    Extension (RME) and Scalable Matrix Extension (SME).

    Produce proper cross-section relative relocations on COFF

    Fixed the calling convention on Windows for variadic functions
    involving floats in the fixed arguments

Changes to the ARM Backend

    Produce proper cross-section relative relocations on COFF

Changes to the Hexagon Target

    The Hexagon target now supports V68/HVX ISA.

Changes to the C API

    The C API functions LLVMGetAlignment and LLVMSetAlignment now
    allow changing alignment on atomicrmw and cmpxchg instructions

    A new entry LLVMDIArgListMetadataKind was added to the
    LLVMMetadataKind enum, representing DIArgLists (D88175)

    Type attributes have been added to LLVM-C, introducing
    LLVMCreateTypeAttribute, LLVMGetTypeAttributeValue and
    LLVMIsTypeAttribute. (D977763’)

    The LTO_API_VERSION was bumped to 28, introducing a new function
    lto_set_debug_options for parsing LTO debug options (D92611)

    LLVMJITTargetSymbolFlags was renamed to LLVMJITSymbolTargetFlags
    (rG8d718a0bff73af066675a6258c01307937c33cf9)

    The C API received support for creating custom ORCv2
    MaterializationUnits and APIs to retrieve an LLJIT instance’s
    linking layers. An ABI breaking change for LLVMOrcAbsoluteSymbols
    was introduced to make it consistent with
    LLVMOrcCreateCustomMaterializationUnit.
    (rGc8fc5e3ba942057d6c4cdcd1faeae69a28e7b671)

    The C API received support for adding ORCv2 object buffers
    directly to an object layer.
    (rG7b73cd684a8d5fb44d34064200f10e2723085c33)

    A breaking change to LLVMGetInlineAsm was introduced, adding
    a ninth argument LLVMBool CanThrow (D95745)

    The C API received support for calling into the new pass manager.
    (D102136)

    The C API function LLVMIntrinsicCopyOverloadedName has been
    deprecated. Please migrate to LLVMIntrinsicCopyOverloadedName2
    which takes an extra module argument and which also handles
    unnamed types. (D99173)

    The C API received support for dumping objects from ORCv2
    (rGcec8e69f01c3374cb38c6683058381b96fab8f89)

    A breaking change to LLVMOrcObjectTransformLayerTransformFunction
    was introduced, changing the order of the function pointer’s
    arguments. (rG8962c68ad007a525f9daa987c99eda57e0d0069a)

    The C API received support for accessing utilities from the
    LLJIT IRTransformLayer and ThreadSafeModule classes. (D103855)

    The C API received support for creating lazy-export
    MaterializationUnits (D104672)

    The C API function LLVMPassBuilderOptionsSetCoroutines was
    removed because couroutine passes have been enabled by default.
    (D105877)

    comdat noduplicates was renamed to comdat nodeduplicate and as
    a result, LLVMNoDuplicatesComdatSelectionKind was renamed to
    LLVMNoDeduplicateComdatSelectionKind. (D106319)

Changes to the FastISel infrastructure

    FastISel no longer tracks killed registers, and instead leaves
    this to the register allocator. This means that hasTrivialKill()
    is removed, as well as the OpNIsKill parameters to the fastEmit_*()
    family of functions.

Changes to the LLVM tools

    The options --build-id-link-{dir,input,output} have been deleted.
    (D96310)

    Support for in-order processors has been added to llvm-mca.
    (D94928)

    llvm-objdump supports -M {att,intel} now. --x86-asm-syntax is
    a deprecated internal option which will be removed in LLVM
    14.0.0. (D101695)

    The llvm-readobj short aliases -s (previously --sections) and
    -t (previously --syms) have been changed to --syms and
    --section-details respectively, to match llvm-readelf. (D105055)

    The llvm-nm short aliases -M (--print-armap), -U (--defined-only),
    and -W (--no-weak) are now deprecated. Use the long form versions
    instead. The alias --just-symbol-name is now deprecated in
    favor of --format=just-symbols and -j. (D105330)

    In lli the default JIT engine switched from MCJIT (-jit-kind=mcjit)
    to ORC (-jit-kind=orc). (D98931)

    llvm-rc got support for invoking Clang to preprocess its input.
    (D100755)

    llvm-rc got a GNU windres compatible frontend, llvm-windres.
    (D100756)

    llvm-ml has improved compatibility with MS ml.exe, managing to
    assemble more asm files.

Changes to LLDB

    LLDB executable is now included in pre-built LLVM binaries.

    LLDB now includes full featured support for AArch64 SVE register
    access.

    LLDB now supports AArch64 Pointer Authentication, allowing
    stack unwind with signed return address.

    LLDB now supports debugging programs on AArch64 Linux that use
    memory tagging (MTE).

    Added memory tag read and memory tag write commands.

    The memory region command will note when a region has memory
    tagging enabled.

    Synchronous and asynchronous tag faults are recognised.

    Synchronous tag faults have memory tag annotations in addition
    to the usual fault address.
2021-11-23 20:55:42 +00:00
ryoon
2eb9304a26 openmp: Fix build on NetBSD/i386 2021-11-21 14:52:35 +00:00
wiz
a352a775a6 opencl-clang: simplify 2021-11-20 23:16:37 +00:00
wiz
6bf4c0cef9 parallel/Makefile: + spirv-headers. 2021-11-20 20:07:10 +00:00
wiz
58150d3855 parallel/spirv-headers: import SPIRV-Headers-1.2.198.0
This package contains machine-readable files for the
SPIR-V Registry.  This includes:

* Header files for various languages.
* JSON files describing the grammar for the SPIR-V core instruction
  set and the extended instruction sets.
* The XML registry file.
* A tool to build the headers from the JSON grammar.
2021-11-20 20:06:55 +00:00
wiz
38dc6152c6 pocl: update to 1.8.
Notable User Facing Changes
---------------------------

- support for LLVM 13
- CMake: Inter-Procedural Optimization is enabled on code of runtime library
  (libpocl.so is compiled with -flto on systems that support it).
- LTTng tracing improved - more command types are traced, and also
  some synchronous API calls (like clCreateBuffer) are traced.
- poclcc, tests and examples can be disabled with CMake options
- Valgrind support improved by making Valgrind aware of pocl's
  reference counting of cl_* objects
- kernels which are called by kernels are now force-inlined
- Support for NetBSD.
- Support for Unix systems without libdl.
- PoCL can now (optionally) respond to SIGUSR2 by printing
  some live debug information.
- improved SPIR support for CUDA devices

Notable Bug Fixes
-----------------

- Fixed a potential crash on Unix systems without sysfs mounted.
- Fixed compilation errors when building on macOS.
  - Fixed POCL_FAST_INIT macro; POCL_INIT_LOCK must be invoked with only one argument.
  - Fix bin/poclcc to not depend on OpenCL 2.0 symbols
- Fixed miscompilation in kernel loops with multiple conditionals with barriers in them.

Other
-----
- Add cmake options PARALLEL_COMPILE_JOBS, PARALLEL_LINK_JOBS to
  use ninja's seperate compile and link job pools.

- Improve memory architecture, buffer migration and allocation.
  Buffers are now allocated on a device when first used
  (previously each buffer was allocated on every device in context).

- the single global LLVMContext was replaced with
  multiple LLVMContexts, one per OpenCL cl_context.
  OpenCL code can now be compiled in parallel
  when using separate cl_contexts. This feature
  is disabled by default since it significantly slowed
  down PyOpenCL. This should be resolved by separating
  LLVM compilation in their own threads in the future.

- a new OpenCL extension was added to PoCL: cl_pocl_content_size.
  The extension allows the user to give optimization hint to PoCL,
  which will be used internally by PoCL to optimize buffer transfers
  between multiple devices.
2021-11-20 20:05:36 +00:00
nia
495fc76c70 parallel: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
2021-10-26 11:10:35 +00:00
nia
d171eeaf22 parallel: Remove SHA1 hashes for distfiles 2021-10-07 14:46:45 +00:00
adam
5e7c36d9d2 revbump for boost-libs 2021-09-29 19:00:02 +00:00
nia
96ae09ba9e pocl: work around broken CPU detection on aarch64 2021-09-20 09:05:30 +00:00
nia
f04470bbb0 threadingbuildingblocks: needs atomic64 2021-09-10 12:08:51 +00:00
nia
87845dbd85 parallel: update to 20210722
New in this release:

* --results no longer prints the result to standard output (stdout) as voted in https://lists.gnu.org/archive/html/parallel/2020-12/msg00003.html
* parset supports associative arrays in bash, ksh, zsh.
* Online HTML is now generated by Sphinx.
* Bug fixes and man page updates.
2021-08-13 12:46:09 +00:00
nia
7232c22305 opencl-clang: update to 12.0.0
compatibility with llvm 12.
2021-08-11 20:49:25 +00:00
fcambus
5b5ae6c801 threadingbuildingblocks: fix build on Linux, we need to link against dl.
Use CMAKE_SYSTEM_NAME to enable linking against dl only on Linux.
2021-07-29 20:03:28 +00:00
nia
f606246ad0 spirv-llvm-translator: update for compatibility with llvm12 2021-07-24 11:00:13 +00:00
adam
0118c7705d threadingbuildingblocks: ... and patches 2021-07-14 17:56:52 +00:00
adam
bcc99f89dd threadingbuildingblocks: updated to 2021.3.0
New in 2021.3 Release

New Features

Since C++20 multiple interfaces are constrained to enforce requirements on argument types.
Preview Features

Extended the high-level task API to simplify migration from TBB to oneTBB.
Added mutex and rw_mutex that are suitable for long critical sections and resistant to high contention.
Added ability to customize the concurrent_hash_map mutex type.
Added heterogeneous lookup, erase, and insert operations to concurrent_hash_map.

Known Limitations

An application using Parallel STL algorithms in libstdc++ versions 9 and 10 may fail to compile due to incompatible interface changes between earlier versions of Threading Building Blocks (TBB) and oneAPI Threading Building Blocks (oneTBB). Disable support for Parallel STL algorithms by defining PSTL_USE_PARALLEL_POLICIES (in libstdc++ 9) or _GLIBCXX_USE_TBB_PAR_BACKEND (in libstdc++  10) macro to zero before inclusion of the first standard header file in each translation unit.
On Linux, if oneAPI Threading Building Blocks (oneTBB) or Threading Building Blocks (TBB) is installed in a system folder like /usr/lib64, the application may fail to link due to the linker search order for libraries. Use the -L linker option to specify the correct location of oneTBB libraries. This issue does not affect program execution.
The oneapi::tbb::info namespace interfaces might unexpectedly change the process affinity mask on Windows systems (see https://github.com/open-mpi/hwloc/issues/366 for details).

Bugs Fixed

Fixed several issues in parallel algorithms and concurrent containers on ARM.
Improved ThreadSanitizer support for the oneTBB Scalable Memory Allocator.
Improved scheduler to reduce the impact of thread priority inversion.
Fixed the behavior of affinity_partitioner and static_partitioner to resolve possible performance issues.
Fixed crash when finalize is called with null scheduler_handler.
Fixed the oneTBB assertion mechanism to avoid possible leaking of user directory paths.
Fixed crash in resumable tasks on ARM-based macOS.
Fixed compilation failures
2021-07-14 17:56:16 +00:00
adam
2235bac606 openmp: updated to 12.0.1
12.0.1:
Unknown changes
2021-07-12 18:48:27 +00:00
nia
bd25a3bbe1 ocl-icd: Link with -pthread to fix pocl on NetBSD 2021-07-09 18:30:29 +00:00
nia
55394cf036 Revbump for MySQL default change 2021-06-23 20:33:06 +00:00
bacon
fded2be687 parallel/ganglia-monitor-core: Release maintainership
Narrowing my focus to biology packages
2021-06-23 19:50:34 +00:00
bacon
369a20836c parallel/slurm-wlm: Release maintainership
Narrowing my focus to biology packages
2021-06-23 19:45:36 +00:00
nia
932643d9f3 ocl-icd: set explicit path to ruby exectuable 2021-06-13 12:04:56 +00:00
nia
3764c3cc52 pocl: add test target 2021-06-11 15:09:23 +00:00
nia
ef2345cfe8 pocl: add buildlink3 file 2021-06-10 21:50:29 +00:00
nia
14897e6523 pocl: add links to upstream pull requests for patches
cpuinfo: check for fopen() failure when opening sysfs nodes to avoid segfault
https://github.com/pocl/pocl/pull/948

pocl_timing: fix detection of Unix monotonic clocks
https://github.com/pocl/pocl/pull/949

Fix detection of dlopen()/libdl
https://github.com/pocl/pocl/pull/950
2021-06-10 12:26:26 +00:00
nia
277f2034bf pocl: Fix a null pointer dererence if sysfs is not present *sigh* 2021-06-10 11:18:06 +00:00
nia
7346efd5a7 pocl: fix name of vendor directory 2021-06-10 10:26:32 +00:00
nia
3930dc8959 ocl-icd: don't load vendor files from /etc 2021-06-10 10:26:07 +00:00
nia
b6baf86b71 add parallel/pocl
OpenCL (Open Computing Language) is an open, royalty-free standard for
cross-platform, parallel programming of diverse accelerators found in
supercomputers, cloud servers, personal computers, mobile devices and embedded
platforms.

PoCL is a portable open source (MIT-licensed) implementation of the OpenCL
standard (1.2 with some 2.0 features supported). In addition to being an easily
portable multi-device (truely heterogeneous) open-source OpenCL implementation,
a major goal of this project is improving interoperability of diversity of
OpenCL-capable devices by integrating them to a single centrally orchestrated
platform.
2021-06-10 09:57:39 +00:00
nia
65a0d92dbf ocl-icd: tool dependency on ruby 2021-06-10 06:02:14 +00:00
nia
ce0c2691ed add parallel/ocl-icd
This package aims at creating an Open Source alternative to vendor specific
OpenCL ICD loaders.

The main difficulties to create such software is that the order of function
pointers in a structure is not publicy available.

This software maintains a YAML database of all known and guessed entries.
2021-06-10 05:55:42 +00:00
nia
ae233109b5 add parallel/opencl-clhpp
OpenCL (Open Computing Language) is an open, royalty-free standard for
cross-platform, parallel programming of diverse accelerators found in
supercomputers, cloud servers, personal computers, mobile devices and
embedded platforms.

This package contains the OpenCL C++ header files.
2021-06-09 20:49:58 +00:00
nia
c02f778ced opencl-clang: improve DESCR 2021-06-09 15:23:36 +00:00
nia
053e02eba9 add parallel/opencl-headers
OpenCL (Open Computing Language) is an open, royalty-free standard for
cross-platform, parallel programming of diverse accelerators found in
supercomputers, cloud servers, personal computers, mobile devices and
embedded platforms.

This package contains C language headers for the OpenCL API.
2021-06-09 15:19:57 +00:00
nia
b3632171a8 add parallel/opencl-clang
opencl-clang is a thin wrapper library around clang.

The library has a OpenCL-oriented API and is capable to compile OpenCL C
kernels to SPIR-V modules.
2021-06-09 15:11:46 +00:00
nia
bacd6847a1 spirv-llvm-translator: add gcc requirement 2021-06-09 14:56:51 +00:00
nia
3b68a02f23 add parallel/spirv-llvm-translator
The LLVM/SPIR-V Bi-Directional Translator is a library and tool for translation
between LLVM IR and SPIR-V.

SPIR-V is a binary intermediate language for representing graphical-shader
stages and compute kernels for multiple Khronos APIs, including OpenCL,
OpenGL, and Vulkan. SPIR-V defines a new language and is a successor to the
original Khronos SPIR, which supported only OpenCL device programs.
2021-06-09 14:55:10 +00:00
mef
80466a11b5 (parallel/promises) Updated 1.0.1 to 1.2.0.1
promises 1.2.0.1
==============

* Added `future_promise()` which returns a `promise` that executes the
  expression using `future::future()`. `future_promise()` should
  (typically) be a drop-in replacement for any `future::future()`
  function call. `future_promise()` will not execute `future` work
  faster than `future::future()`, but `future_promise()` will only
  submit `future` jobs if a worker is available. If no workers are
  available, `future_promise()` will hold the expression information
  in a `promise` until a worker does become available to better take
  advantage of computing resources available to the main R
  session. For more information, please see the [`future_promise()`
  article](https://rstudio.github.io/promises/articles/future_promise.html). (#62)

* Added visibility support for `Promise$then(onFulfilled)`. (#59)

promises 1.1.1
==============

* Fix handling of FutureErrors during `future::resolved()` and
  `future::value()` by discarding the corrupt future. (#37)


promises 1.1.0
==============

* Fixed #49: `promise_all()` previously did not handle `NULL` values correctly. (#50))

* `new_promise_domain` now takes a `wrapOnFinally` argument, which can
  be used to intercept registration of `finally()`. Previous versions
  treated `finally` as passing the same callback to
  `then(onFulfilled=..., onRejected=...)`, and ignoring the result;
  for backward compatibility, promise domains will still treat
  `finally` that way by default (i.e. if `wrapOnFinally` is `NULL`,
  then `finally` will result in `wrapOnFulfilled` and `wrapOnRejected`
  being called, but if `wrapOnFinally` is provided then only
  `wrapOnFinally` will be called). (#43)
2021-06-05 08:43:54 +00:00
wiz
6eae1297d5 *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
adam
1acb82132b py-billiard: updated to 3.6.4.0
3.6.4.0
- Issue 309: Add Python 3.9 support to spawnv_passfds()
- fix 314
2021-05-06 10:36:08 +00:00
nia
4af78b47dd parallel: update to 20210422
20210422

* Bug fixes and man page updates.

20210322

* Bug fixes and man page updates.
2021-05-02 08:48:33 +00:00
mrg
0a843265c7 various fixes for arm64 big endian support.
most of these simply extend matching from "aarch64" to "aarch64eb"
in various forms of code.  most remaining uses in pkgsrc of
"MACHINE_ARCH == aarch64" are because of missing aarch64eb support,
such as most of the binary-bootstrap requiring languages like rust,
go, and java.

no pkg-bump because this shouldn't change packages on systems that
could already build all of these.
2021-04-25 07:51:24 +00:00