Commit graph

231788 commits

Author SHA1 Message Date
adam
b184f0b3bc Changes 5.6.24:
* CMake support was updated to handle CMake version 3.1.
* The server now includes its version number when it writes the initial “starting” message to the error log, to make it easier to tell which server instance error log output applies to. This value is the same as that available from the version system variable.
* ALTER TABLE did not take advantage of fast alterations that might otherwise apply to the operation to be performed, if the table contained temporal columns found to be in pre-5.6.4 format (TIME, DATETIME, and TIMESTAMP columns without support for fractional seconds precision).
* Statement digesting as done previously by the Performance Schema is now done at the SQL level regardless of whether the Performance Schema is compiled in and is available to other aspects of server operation that could benefit from it. The default space available for digesting is 1024 bytes, but can be changed at server startup using the max_digest_length system variable.
* Bug fixes.
2015-04-08 10:38:48 +00:00
adam
47f30e934e Changes 5.5.43:
* CMake support was updated to handle CMake version 3.1.
* The server now includes its version number when it writes the initial “starting” message to the error log, to make it easier to tell which server instance error log output applies to. This value is the same as that available from the version system variable.
* Bug fixes.
2015-04-08 10:38:01 +00:00
adam
5e1356c3d4 Changes 2.3.5:
* The prompt script (in contrib/) did not show the untracked sign
  when working in a subdirectory without any untracked files.

* Even though "git grep --quiet" is run merely to ask for the exit
  status, we spawned the pager regardless.  Stop doing that.

* Recommend format-patch and send-email for those who want to submit
  patches to this project.

* An failure early in the "git clone" that started creating the
  working tree and repository could have resulted in some directories
  and files left without getting cleaned up.

* "git fetch" that fetches a commit using the allow-tip-sha1-in-want
  extension could have failed to fetch all the requested refs.

* The split-index mode introduced at v2.3.0-rc0~41 was broken in the
  codepath to protect us against a broken reimplementation of Git
  that writes an invalid index with duplicated index entries, etc.

* "git prune" used to largely ignore broken refs when deciding which
  objects are still being used, which could spread an existing small
  damage and make it a larger one.

* "git tag -h" used to show the "--column" and "--sort" options
  that are about listing in a wrong section.

* The transfer.hiderefs support did not quite work for smart-http
  transport.

* The code that reads from the ctags file in the completion script
  (in contrib/) did not spell ${param/pattern/string} substitution
  correctly, which happened to work with bash but not with zsh.

* The explanation on "rebase --preserve-merges", "pull --rebase=preserve",
  and "push --force-with-lease" in the documentation was unclear.
2015-04-08 10:37:07 +00:00
adam
99ce87d8ae Changes 1.9.20150307:
* don't die when IPv6 is enabled and interface has no IPv4 address
* IP wildcard for AddPinhole() is empty string
2015-04-08 10:36:16 +00:00
nros
9ee9706068 Fix build on FreeBSD 10 and maybe other BSD:s. 2015-04-08 10:31:28 +00:00
wiz
54eaa36bb5 Updated misc/calibre to 2.23.0 2015-04-08 09:57:05 +00:00
wiz
ec224888a7 Update to 2.23.0:
- version: 2.23.0
  date: 2015-04-03

  new features:
    - title: "Allow adding an empty ebook in various formats to
    existing book records by right clicking the Add Books button"

    - title: "Add ability to create additional empty formats to
    the 'Add empty book' command"

    - title: "News download: Add API to cleanly abort the download
    of an article during the preprocess stage based on the article's
    contents."

    - title: "Update the version of Qt bundled with calibre to
    5.4.1. This fixes various minor bugs, most notably, improving
    text rendering on linux."

  bug fixes:
    - title: "MOBI Input: Fix links not working in viewer for MOBI
    files that contain anchors placed on linebreak elements."

    - title: "Book details panel: Fix copying Path link by right
    clicking on it not working."

    - title: "Fix a regression that caused importing of a single
    book from a directory to fail if the directory has no ebook
    files in it"

    - title: "Column Icons: Fix apostrophes in icon filenames
    causing errors."

    - title: "Edit Book: Fix a regression that caused Remove unused
    CSS to fail on invalid CSS selectors, instead of ignoring them"

    - title: "Open With: Fix open with failing to get list of
    default programs on windows if the registry contains missing
    ProgIDs."

  improved recipes:
    - Esquire
    - Courrier International
    - CNET
    - Tagesschau
2015-04-08 09:56:53 +00:00
wiz
c4224295f4 + ansible-1.9.0, calibre-2.23.0, digikam-4.9.0, libvpx-1.4.0,
mono-4.0.0, nettle-3.1, wine-devel-1.7.40.
2015-04-08 08:14:13 +00:00
wen
95163988d2 Updated www/p5-Mojolicious to 6.07 2015-04-08 06:48:45 +00:00
wen
a9f2433ab4 Update to 6.07
Upstream changes:
6.07  2015-04-07
  - Fixed Windows bug in "daemon.t".

6.06  2015-04-06
  - Added element_count_is method to Test::Mojo. (Zoffix)
  - Added "chat.pl" to example scripts.
  - Improved Mojo::DOM::CSS to handle attribute selectors with single quotes
    correctly.

6.05  2015-03-24
  - Fixed circular require bug in Mojo::Base and Mojo::Util.

6.04  2015-03-23
  - Improved Mojo::Reactor::EV and Mojo::Reactor::Poll to fail more
    consistently.
  - Improved Mojo::Base performance slightly.
  - Fixed a few bugs in Mojo::DOM::CSS that required class, id and attribute
    selectors, as well as pseudo-classes, to be in a specific order.

6.03  2015-03-16
  - Added support for overriding the HTTP request method with the _method query
    parameter.
  - Added suggested_method method to Mojolicious::Routes::Route.
  - Improved portability of some tests.

6.02  2015-03-09
  - Added daemon attribute to Mojo::Server::Morbo.
  - Improved portability of Mojo::Server::Morbo.
  - Fixed empty template handling in Mojo::Template.

6.01  2015-03-03
  - Added content_with helper to Mojolicious::Plugin::DefaultHelpers.
  - Relaxed request-line handling in Mojo::Message::Request.
  - Fixed code name in version command and built-in templates.
2015-04-08 06:47:35 +00:00
wiz
6a579a0405 Updated print/tex-pgfplots-doc to 1.12 2015-04-08 05:44:13 +00:00
wiz
2c46e4bd30 Update print/tex-pgfplots and print/tex-pgfplots-doc to 1.12, from
Leonardo Taccari in PR 49818.

Changes:
1.12: scalability + performance
- scalability: reduced TeX memory consumption for huge inline tables
- scalability: lualatex allows bigger 3d graphics
- scalability: lualatex now reduces compilation time for huge 3d graphics
   (requires \pgfplotsset{compat=newest} at the time of this writing)
        surf shader=faceted: time reduced to 61% of pdflatex
                (\addplot3[surf,samples=70] {exp(-x^2-y^2 +x*y)})

        surf shader=interp: time reduced to 25% of pdflatex
                (\addplot3[surf,shader=interp,samples=70] {exp(-x^2-y^2 +x*y)})

        surf shader=interp, parametric: time reduced to 36% of pdflatex
                (\addplot3[surf,shader=interp,z buffer=sort, samples=50,domain=-
1:0,y domain=0:2*pi] ({sqrt(1-x^2) * cos(deg(y))}, {sqrt( 1-x^2 ) * sin(deg(y))}
, x);)

        surf shader=faceted, parametric: time reduced to 40% of pdflatex
                (\addplot3[surf,z buffer=sort, samples=50,domain=-1:0,y domain=0
:2*pi] ({sqrt(1-x^2) * cos(deg(y))}, {sqrt( 1-x^2 ) * sin(deg(y))}, x);)

- scalability: lualated now reduces compilation time for boxplots.
    10000 input points from table: time reduced to 23% of pdflatex
- fixed bug: 3d axes where all axes used log scale produced compile failure
- fixed bug: axis equal did not respect "disabledatascaling"
- fixed bug: mesh legend was confused by color input=explicit
- fixed bug: colorbar style did not reset zmin/zmax
- fixed bug: memory allocation in FPU consumed too much memory
- fixed bug: boxplots: removed compilation error due to spurious spaces in optio
ns list
- fixed bug: boxplots: now uses standard quantile estimators: has all 9 estimato
rs of R and uses the same as in Excel as default (as of compat=1.12)
- fixed bug: boxplots: sometimes failed to compute boxplot statistics for specia
l inputs
- fixed bug: boxplots: now, it sets 'mark=*' for outliers if there is no mark (c
ompat=1.12)
- fixed regression: compat=1.11 broke arcs inside of axis
- new feature: ensured that arcs inside of axis make use of 'axis cs' and 'axis
direction cs' automatically
- new feature: ensured that (0:1) is evaluated with axis cs
- fixed bug: precision of transformation cartesian to polar was too low (added a
tan2 to fpu)
- fixed bug: z buffer caused 'mesh legend' to produce a compile error
- new feature: added 'y filter/.expression={y==3 ? nan : y}' to simplify coordin
ate filters

1.11: usability + bug fixes.
- new feature: "hide obscured x ticks=false" to disable the feature which hides
ticks
- simplified UI for symbolic coords: now, it accepts unexpandable
  dictionary entries including umlauts, undefined macros, math mode, ...
- simplified UI for symbolic coords: added magic prefix
        [normalized]<number> to allow something like xmin={[normalized]0.7}
- simplified UI for custom annotations: one does not need to say "axis cs" any l
onger;
  coordinates like (1,2) are now automatically interpreted as (axis cs:1,2)
- new feature: 'type ticklabels with struts' improves baseline alignment of tick
 labels
- new feature: 'trig format plots=rad' allows to use radians in trigonometric ev
aluations
- simplified 'external lib': added driver auto-detection for pdflatex, lualatex,
 xelatex, dvips
        (\usepgfplotslibrary{external}, or, with the next PGF release, \usetikzl
ibrary{external})
- simplified UI for \addplot coordinates: now, it expands macros as it goes.
- new feature: 'intersection segments' now accepts negative indices to count fro
m the last backwards
- simplified UI: 'intersection segments' now accepts new syntax with 1-based ind
ices (old 0-based are still supported)
- fixed bug: fillbetween has had a problem with pins on input paths
- fixed bug: now, 'stacked ignores zero' is no longer applied to error bars.
- fixed bug: tick lines were drawn incorrectly for centered axis lines in 3d
- fixed bug: variable=u failed to work in some contexts
- fixed bug: fill between implicitly activated layers, but did not install the
   correct layers for grid lines etc.
- fixed bug: z grid style was applied to y grid style
- fixed bug: using 'x=1cm' failed to work in axis descriptions (legends)
- fixed bug: mesh legend failed to work with 'shader=interp'
- fixed bug: bounding box of shader=interp was wrong if there were transformatio
ns.
- fixed bug: added support for \addplot graphics in ConTeXt
- fixed bug: external lib failed to work with dvips (since PGF 3.0.0 I suppose);
 now it produces correct bounding boxes
- fixed bug: \pgfplotstablenew can now overwrite existing tables.
- fixed bug: extra ticks near intersections of axis lines were hidden
- fixed bug: 'intersection segments' did not work with '--cycle'
- fixed bug: 'intersection segments' did not update the last tikz point
- fixed bug: tick lines/grid lines have been clipped when they were near the bou
ndary
- fixed bug: soft clip decoration failed to apply the transformation matrix
- fixed bug: polar axes and units library resulted in broken bounding box
- fixed bug: \addplot[stack plots=false] used to work up to 1.8, but failed unti
l now. Fixed.
- fixed bug: hist/density was broken since some time


1.10:
- new feature: fill between plots (library fillbetween)
- new feature: concatenate intersection segments (library fillbetween)
- fixed bug: xelatex failed to run contour external
- fixed incompatibility with \label and \usepackage{mcaption}
- fixed bug: histograms produced wrong point meta
- fixed bug: histograms reported the wrong 'plot name' and confused shifts of ba
r plots

1.9:
- new feature: asymmetric error bars
- new feature: activated math parser for axis limit arguments, arguments in axis
 cs, and domain argument in log plots
- new feature: stacked bar plots place their 'nodes near coords' correctly in th
e middle and print the increment (compat=1.9)
- new feature: stacked bar plots suppress empty increments (compat=1.9).
- new feature: 'scatter/position=relative|absolute' allow to position 'nodes nea
r coords' absolutely.
   use-case: bar plots + nodes near coords which are at, say, y=0 rather than th
eir y value
- new feature: integration of smooth shadings & auto-CMYK conversion
    \usepackage[cmyk]{xcolor} or \selectcolormodel{cmyk} will reconfigure pgfplo
ts to use CMYK (document-wide)
- new feature (advanced audience only): programmatic access to data coordinates
during the visualization phase
        -> allows much more customization for error bars, stacked plots, nodes n
ear coords.
- wrote beginner tutorials
- fixed bug: error bars and point meta did not work together
- fixed bug: stacked plots did not respect 'visualization depends on'
- fixed bug: luatex 0.76 is not backwards compatible; added version switch
- fixed bug: ternary library precision has been improved
- fixed bug: problem with axis limits very close to 0
- fixed bug: colormap specification limit case produced out of bounds exception


1.8:
- new feature: tight bounding box even if the axis is no box and bb excludes cli
p path
- new feature: mesh/color input=explicit
- new feature: shader=interp now has drivers for both dvipdfmx and xetex
- new feature: support for more color spaces in colormap definitions
- new feature: shader=interp and device-level gray colorspaces
- new feature: 'contour/contour dir=[xyz]' to draw contours in different directi
ons
- new feature: statistics library with boxplot handler (both boxplot prepared an
d automatic computation)
- fixed bug: 3d centered axis lines and label placement (requires compat=1.8 or
higher)
- fixed bug: axis lines and placement of labels, tick scale labels, and reversed
 axes
    (requires compat=1.8 or higher)
- fixed bug: filtering out coords from a mesh plot failed
- fixed bug: every legend image post was not respected inside of \ref{plotlabel}
- fixed bug: high-order patches computed the shader=flat mean in a wrong way.
- fixed bug: remember picture inside of pgfplots axes failed (due to cell pictur
e)
- fixed bug: now, the tick scale label will be omitted if there are no ticks
- fixed bug: axis box path was not closed
- fixed bug: the bounding box was non-empty even if the axis was hidden.
- fixed bug: auto-alignment of nodes near coords failed for xbar plots
- fixed bug: providing bar width / bar shift in terms of axis units did
    not work with [xy]bar and nodes near coords
- fixed bug: transformation 'data cs=cart' -> polar is more robust now
- fixed bug: code did not compile against pgf 2.00
- fixed bug: patch plot lib and shader=interp,patch type=biquadratic
- fixed bug: context path searching issue (pgfplots.lua)
- fixed bug: shader=interp and dvips driver
- fixed bug: error bars with explicit relative input failed

1.7
- added feature: 'bar shift' and 'bar width' can now be expressed in terms of ax
is units (compat=1.7 or higher)
- fixed incompatibility regression pgfplots 1.6.1 pgf 2.10: layers
- fixed incompatibility pgfplots and imakeidx
- added feature: 'enlargelimits={abs=1cm}', i.e. enlarge by dimension rather tha
n unit
- patchplots lib: added patch type=bicubic
- patchplots lib: added support for global paths (fillable)
- patchplots lib: added patch type sampling feature
- patchplots lib: improved usability (documentation and improvements)
- fixed path issues in context: moved lua input file to tex/generic
- fixed bug: \ref{legendimage} inside of legend text was wrong.

1.6.1:
- fixed incompatibility lualatex,shader=interp, and german package (introduced i
n 1.6)

1.6:
- added support for layered graphics (main use case: multiple axes and layers)
- added support for second colormap in mesh plots (mesh/interior colormap name)
- added support for scopes inside of axes
- contour plots: added ability to provide list of discrete labels (mesh/levels)
- empty lines are interpreted as interruptions in data plots (was undocumented s
ince 1.4)
- added more scaling options to 'scale mode=scale uniformly' (affects axis equal
 in 3d
  and \addplot3 graphics)
- fixed wrong implementation of 'axis equal' and 'unit vector ratio' in 3d
  (backwards compatible for 2d, but not for 3d - the 3d implementation was plain
 wrong)
- fixed incompatibility of lualatex and shader=interp
- fixed bugs/added features around \addplot3 graphics
- fixed bug: colorbar did not support ymode=log
- fixed a couple of minor bugs
- fixed bounding box computation for clip=false,axis lines=none

1.5.1:
- more operations for FPU library (==, !=,<=,>=,?)
- fixed bug in usage of decorations in \addplot
- bugfix for contour prepared format=matlab
- added 'const plot mark mid' and 'jump mark mid' plot handlers
- nodes on a plot (\addplot ... node[pos=<fraction>] {};)
- 'trim axis group left' and 'trim axis group right'
- bugfixes for polar axes and log+stacked plots
- added style 'log ticks with fixed point'
- introduced patched tikz paths to simplify circles and ellipses within an axis
- patchplots lib: patch type=polygon
- some more bugfixes

1.5:
 - Contour plots,
 - Histograms,
 - Quiver plots,
 - patch plots (library)
      - Triangle Meshes
      - Bilinear Elements
      - Quadratic Triangles
      - Biquadratic Quadrilaterals
      - Coons Patches
 - Discrete colorbars,
 - Table sorting,
 - Linear regression,
 - Ternary diagrams,
      - Tieline Plots
 - Smith Charts
 - Polar axes,
 - Empty lines in input files result in interrupted plots,
 - PDF user defined coordinate mouse popups
 - CMYK colormaps and shadings,
 - new markers and cycle lists
 - access to axis limits,
 - \addplot3 graphics: pgfplots draws an appropriate axis for a three-dimensiona
l(!) external png graphics
 - 3D axes: support to provide explicit unit vectors:
        - explicit unit vectors
        - explicit unit vectors which are uniformly rescaled to match width/heig
ht
 - 3D axes: improved support for unit vector ratios
 - improvements of the groupplot styles
 - preliminary support for (2d) bar plots in 3d axes
 - new shader 'faceted interp'
 - table package:
        - 'every nth row' style
        - 'comment chars' key to define comment characters in input files
        - 'skip first n' style
 - lots of smaller bugfixes (see ChangeLog for details)
2015-04-08 05:43:48 +00:00
wiz
9152d4ec5c Add a comment to patch-ab. From Edgar Fuß in private mail. 2015-04-08 05:35:39 +00:00
wiz
4bde71a4e2 Updated mail/msmtp to 1.6.1 2015-04-08 05:32:07 +00:00
wiz
344da82e03 Update mail/msmtp to version 1.6.1, from Leonardo Taccari in PR 49820.
pkgsrc changes:
- gnome-keyring option has changed to secret option to reflect the upstream
  change. For more information please read the changelog below.

Changes:
Version 1.6.1:
- The new configure option --with-tls replaces --with-ssl.
- A new configure option --disable-gai-idn was added.

Version 1.6.0:
- Support for SOCKS proxies was added. This allows msmtp to be used with Tor.
- GNOME Keyring support now uses libsecret instead of libgnome-keyring. It is
  now documented how to use secret-tool to manage passwords for msmtp; the
  obsolete msmtp-gnome-tool script is removed.
- Configuration file security is now only checked if the file actually contains
  secrets such as passwords. (If you still store passwords in the configuration
  file, consider using the passwordeval command or a key ring instead.)
- The GSSAPI authentication method is not chosen automatically anymore, you have
  to request it manually if you really want to use it.
- From: and Date: headers are now added to mails if necessary, for compatibility
  with sendmail, postfix, exim, and other MTAs. This can be disabled with the
  add_missing_from_header and add_missing_date_header commands.
- Libidn is not required for IDN support anymore on systems where getaddrinfo()
  supports the AI_IDN flag and the GnuTLS version is >= 3.4.0.
- The new remove_bcc_headers command replaces the old keepbcc command (but the
  old command is still supported for compatibility).
- SSLv3 is disabled, and the obsolete tls_force_sslv3 command and
  --tls-force-sslv3 option have no effect anymore.
2015-04-08 05:31:59 +00:00
wiz
df64bca233 Describe secret option (hush!) 2015-04-08 05:31:00 +00:00
wiz
8a241f4dd4 Updated net/tor to 0.2.5.12 2015-04-08 05:26:11 +00:00
wiz
4ba23aac75 Update to 0.2.5.12, from Christian Sturm in PR 49823.
Changes in version 0.2.5.12 - 2015-04-06
  Tor 0.2.5.12 backports two fixes from 0.2.6.7 for security issues that
  could be used by an attacker to crash hidden services, or crash clients
  visiting hidden services. Hidden services should upgrade as soon as
  possible; clients should upgrade whenever packages become available.

  This release also backports a simple improvement to make hidden
  services a bit less vulnerable to denial-of-service attacks.

  o Major bugfixes (security, hidden service):
    - Fix an issue that would allow a malicious client to trigger an
      assertion failure and halt a hidden service. Fixes bug 15600;
      bugfix on 0.2.1.6-alpha. Reported by "disgleirio".
    - Fix a bug that could cause a client to crash with an assertion
      failure when parsing a malformed hidden service descriptor. Fixes
      bug 15601; bugfix on 0.2.1.5-alpha. Found by "DonnchaC".

  o Minor features (DoS-resistance, hidden service):
    - Introduction points no longer allow multiple INTRODUCE1 cells to
      arrive on the same circuit. This should make it more expensive for
      attackers to overwhelm hidden services with introductions.
      Resolves ticket 15515.
2015-04-08 05:26:02 +00:00
taca
01e1e726c6 Note update of net/ntp4 package to 4.2.8p2. 2015-04-08 03:32:05 +00:00
taca
796b875f7f Update ntp4 package to 4.2.8p2.
NTP 4.2.8p2 (Harlan Stenn <stenn@ntp.org>, 2015/04/xx)

Focus: Security and Bug fixes, enhancements.

Severity: MEDIUM

In addition to bug fixes and enhancements, this release fixes the
following medium-severity vulnerabilities involving private key
authentication:

* [Sec 2779] ntpd accepts unauthenticated packets with symmetric key crypto.

    References: Sec 2779 / CVE-2015-1798 / VU#374268
    Affects: All NTP4 releases starting with ntp-4.2.5p99 up to but not
	including ntp-4.2.8p2 where the installation uses symmetric keys
	to authenticate remote associations.
    CVSS: (AV:A/AC:M/Au:N/C:P/I:P/A:P) Base Score: 5.4
    Date Resolved: Stable (4.2.8p2) 07 Apr 2015
    Summary: When ntpd is configured to use a symmetric key to authenticate
	a remote NTP server/peer, it checks if the NTP message
	authentication code (MAC) in received packets is valid, but not if
	there actually is any MAC included. Packets without a MAC are
	accepted as if they had a valid MAC. This allows a MITM attacker to
	send false packets that are accepted by the client/peer without
	having to know the symmetric key. The attacker needs to know the
	transmit timestamp of the client to match it in the forged reply
	and the false reply needs to reach the client before the genuine
	reply from the server. The attacker doesn't necessarily need to be
	relaying the packets between the client and the server.

	Authentication using autokey doesn't have this problem as there is
	a check that requires the key ID to be larger than NTP_MAXKEY,
	which fails for packets without a MAC.
    Mitigation:
        Upgrade to 4.2.8p2, or later, from the NTP Project Download Page
	or the NTP Public Services Project Download Page
        Configure ntpd with enough time sources and monitor it properly.
    Credit: This issue was discovered by Miroslav Lichvar, of Red Hat.

* [Sec 2781] Authentication doesn't protect symmetric associations against
  DoS attacks.

    References: Sec 2781 / CVE-2015-1799 / VU#374268
    Affects: All NTP releases starting with at least xntp3.3wy up to but
	not including ntp-4.2.8p2 where the installation uses symmetric
	key authentication.
    CVSS: (AV:A/AC:M/Au:N/C:P/I:P/A:P) Base Score: 5.4
    Note: the CVSS base Score for this issue could be 4.3 or lower, and
	it could be higher than 5.4.
    Date Resolved: Stable (4.2.8p2) 07 Apr 2015
    Summary: An attacker knowing that NTP hosts A and B are peering with
	each other (symmetric association) can send a packet to host A
	with source address of B which will set the NTP state variables
	on A to the values sent by the attacker. Host A will then send
	on its next poll to B a packet with originate timestamp that
	doesn't match the transmit timestamp of B and the packet will
	be dropped. If the attacker does this periodically for both
	hosts, they won't be able to synchronize to each other. This is
	a known denial-of-service attack, described at
	https://www.eecis.udel.edu/~mills/onwire.html .

	According to the document the NTP authentication is supposed to
	protect symmetric associations against this attack, but that
	doesn't seem to be the case. The state variables are updated even
	when authentication fails and the peers are sending packets with
	originate timestamps that don't match the transmit timestamps on
	the receiving side.

	This seems to be a very old problem, dating back to at least
	xntp3.3wy. It's also in the NTPv3 (RFC 1305) and NTPv4 (RFC 5905)
	specifications, so other NTP implementations with support for
	symmetric associations and authentication may be vulnerable too.
	An update to the NTP RFC to correct this error is in-process.
    Mitigation:
        Upgrade to 4.2.8p2, or later, from the NTP Project Download Page
	or the NTP Public Services Project Download Page
        Note that for users of autokey, this specific style of MITM attack
	is simply a long-known potential problem.
        Configure ntpd with appropriate time sources and monitor ntpd.
	Alert your staff if problems are detected.
    Credit: This issue was discovered by Miroslav Lichvar, of Red Hat.

* New script: update-leap
The update-leap script will verify and if necessary, update the
leap-second definition file.
It requires the following commands in order to work:

	wget logger tr sed shasum

Some may choose to run this from cron.  It needs more portability testing.
2015-04-08 03:31:33 +00:00
rodent
01d63f0d03 Updated sysutils/smartmontools to 6.3 2015-04-08 01:44:15 +00:00
rodent
c52ca67627 2014-07-26 Christian Franke <franke@computer.org>
smartmontools 6.3

2014-07-25  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Apple SD/SM/TS...E/F SSDs: Rename, add TS*[EF]
	- JMicron based SSDs: Fix regex for Apple TS*C
	- Marvell based SanDisk SSDs: X210

2014-07-25  Alex Samorukov  <samm@os2.kiev.ua>

	drivedb.h: Apple SM* SSD - add attribute 173 description (guessed)

2014-07-23  Christian Franke  <franke@computer.org>

	ataprint.cpp: Print SCT Status regardless of SCT Data Table support.
	atacmds.cpp: ataReadSCTTempHist(): Do not reread initial SCT Status.
	configure.ac: Fix typo in help text.  Add MinGW comment.

2014-07-22  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Apple SD/SM...E/F SSDs (ticket #342)
	- Apple SSD SM128, Asus-Phison SSD: Remove (missing attribute info)

2014-07-20  Christian Franke  <franke@computer.org>

	atacmds.cpp: Rework heuristics for 'tempminmax' format.
	Now supports negative values (ticket #291) and WDC over temperature
	counter.
	Change default for Head_Flying_Hours to 'raw24(raw8)'.  This provides
	more reasonable output for Seagate HDDs missing in drivedb.h.
	drivedb.h: Comment new default for Head_Flying_Hours.
	smartctl.8.in, smartd.8.in, smartd.conf.5.in:
	Fix usage of line breaks and empty lines.

2014-07-19  Christian Franke  <franke@computer.org>

	smartctl.8.in, smartd.8.in, smartd.conf.5.in, update-smart-drivedb.8.in:
	Add FILES section.  Move FULL PATH info to FILES section.
	Rename REFERENCES section.  Move HOME PAGE info to REFERENCES section.
	Remove AUTHORS section from smartd.conf man page.
	Update or remove various outdated info.

2014-07-18  Christian Franke  <franke@computer.org>

	configure.ac: Use 'email' instead of 'mail' on Cygwin.
	Remove outdated '-mno-cygwin' error check.
	Makefile.am, smartd.conf.5.in: Replace 'mail' by actual platform
	specific mailer.
	examplescripts/README, examplescripts/Example[123]: Remove bashisms.
	Use '/usr/bin/mail' instead of '/bin/mail'.
	os_win32/daemon_win32.cpp: Support older MinGW headers with missing
	struct SERVICE_DELAYED_AUTO_START_INFO.

2014-07-17  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Crucial/Micron MX100/M500/M510/M550 Client SSDs: Rename, add MX100,
	  update MX510/550
	- Indilinx Barefoot based SSDs: OCZ Vertex 1.10
	- Intel 320 Series SSDs: 'L' variant
	- JMicron based SSDs: Transcend *18M-M variant
	- Plextor M3/M5 (Pro) Series SSDs: M5M (mSATA) variant
	- Samsung based SSDs: 840 EVO

2014-07-16  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Marvell based SanDisk SSDs: Extreme II (ticket #334), others
	- SanDisk based SSDs: iSSD P4 (ticket #272), U100 (ticket #337), others
	- USB: Iomega (0x059b:0x047a)
	- USB: WD My Passport: Merge entries
	- USB: WD My Passport USB 3.0 (0x1058:0x074a, 0x1058:0x0820)
	- USB: ADATA (0x125f:0xa[13]1a)
	- USB: JMicron JMS539 (0x152d:0x0539): New FW supports SAT (ticket #338)
	- USB: TrekStor Datastation (0x1e68:0x0050) (Red Hat Bugzilla 954162)

2014-07-13  Christian Franke  <franke@computer.org>

	atacmds.cpp: Add missing const and initialization.
	Don't print extra '\n' if self-test log is empty.
	ataprint.cpp: Add new ACS-4 log.
	cciss.cpp: Fix C++11 builds on Linux.  GCC and CLang do not
	predefine 'linux' when in '-std=c++11' mode.
	smartd.cpp: Update description of Windows smartd service.
	README: Update license info.  Remove outdated ATA references.

2014-07-10  Christian Franke  <franke@computer.org>

	Makefile.am: Rework build of Solaris specific man pages.
	This fixes some bogus and some missing replacements.
	smartctl.8.in, smartd.8.in, smartd.conf.5.in: Minor typo and syntax
	fixes.

2014-07-09  Christian Franke  <franke@computer.org>

	smartctl.8.in, smartd.8.in, smartd.conf.5.in: Avoid '.SH' macros with no
	argument.  Remove colons from section names.
	Merge sections CONTRIBUTORS and CREDITS with AUTHORS.
	Update SEE ALSO sections.

2014-07-05  Christian Franke  <franke@computer.org>

	configure.ac: Remove snprintf() compile time test.
	Add '--with-working-snprintf' configure option.
	Add __USE_MINGW_ANSI_STDIO test for MinGW GCC.
	utility.cpp: Add snprintf() runtime test.
	Add GCC version to output of -V option.
	Makefile.am: Add update-smart-drivedb.1m for Solaris.

2014-06-30  Christian Franke  <franke@computer.org>

	configure.ac: Update macros as suggested by 'autoconf --warnings=obsolete'.
	Makefile.am: Add creation of empty directories to install targets.

2014-06-29  Christian Franke  <franke@computer.org>

	configure.ac, Makefile.am, smartd.cpp, smartd_warning.sh.in:
	Add '--with-smartdscriptdir' configure option to change location of
	smartd_warning.sh (Debian bug 710815).
	Add '--with-smartdplugindir' configure option to change (or disable)
	smartd_warning.sh plugin location.
	smartd.conf.5.in: Optionally hide the plugin documentation.

2014-06-27  Christian Franke  <franke@computer.org>

	Makefile.am: Add update-smart-drivedb.8 target.
	update-smart-drivedb.8.in: Add copyright and version info.
	Adjust path names for make target.
	Add FreeBSD/OpenBSD specific info.

2014-06-27  Hannes von Haugwitz  <hannes@vonhaugwitz.com>

	update-smart-drivedb.8.in: New man page (Debian bug 708433).

2014-06-27  Christian Franke  <franke@computer.org>

	configure.ac: Suppress pkg-config warnings about missing 'systemd.pc'.
	Makefile.am: Silence build of man pages and svnversion.h.
	This makes '--enable-silent-rules' or 'make V=0' more effective
	(available since automake 1.13).

2014-06-27  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Crucial/Micron RealSSD C300/M500: New attributes (ticket #326)
	- SandForce Driven SSDs: ADATA XM11, Corsair Force LS, OWC Aura Pro 6G
	  OWC Mercury Electra Pro 3G, PNY Prevail Elite, Transcend SSD320/720

2014-06-25  Christian Franke  <franke@computer.org>

	os_win32.cpp: Fix calculation of SCSI resid.

2014-06-23  Christian Franke  <franke@computer.org>

	scsiata.cpp: usbjmicron_device: Fix SMART Status check for USB bridges
	which always return 0x01.  Add JMicron specific error messages.

2014-06-22  Christian Franke  <franke@computer.org>

	atacmds.cpp, ataprint.cpp: Improve messages for unsupported SMART Status
	command.
	ataprint.cpp: Print form factor.

2014-06-21  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Crucial/Micron M500/M510/M550 Client SSDs
	- Micron M500DC Enterprise SSDs
	Based on patch provided by Clayton Hawkings from Micron.

2014-06-20  Christian Franke  <franke@computer.org>

	autogen.sh: automake 1.14.1 works.

2014-06-20  Christian Franke  <franke@computer.org>

	scsiata.cpp: usbjmicron_device: Check SCSI resid for SMART STATUS.
	Some (Prolific) USB bridges do not transfer a status byte.
	os_win32.cpp: Include SCSI resid in debug output.

2014-06-19  Douglas Gilbert  <dgilbert@interlog.com>

	scsiprint.cpp:
	- minor comment clean-up

2014-06-19  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Intel 730 and DC S3500/S3700 Series SSDs: rename, add 730 and S3700.
	Remove extra S3700 entry.  Based on patch provided by Tim Small.

2014-06-18  Christian Franke  <franke@computer.org>

	os_win32.cpp: Fix CSMI support for older Intel RST drivers which set
	bPortIdentifier=0xff (regression from r3888).
	os_win32/installer.nsi: Create standard InstallLocation registry entry.
	Keep old Install_Dir entry if needed for GSmartControl.
	Update links in registry and shortcuts.

2014-06-18  Christian Franke  <franke@computer.org>

	drivedb.h:
	- USB: Buffalo MiniStationHD-PCFU3 (0x0411:0x0240)
	- USB: Toshiba Stor.E Plus (0x0480:0xa00a) (Debian bug 734395)
	- USB: Samsung D3 Station (0x04e8:0x6124) (ticket #332)
	- USB: Samsung M3 Portable (0x04e8:0x61b[45])
	- USB: Seagate Expansion Portable (0x0bc2:0x2312)
	- USB: Seagate Expansion External (0x0bc2:0x3312) (ticket #320)
	- USB: WD Elements (0x1058:0x10[ab]8) (ticket #331)
	- USB: ASMedia AS2105 (0x174c:0x5136)

2014-06-16  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Seagate Laptop Thin HDD
	- Seagate Barracuda 7200.14 (AF): *DM000 variant
	- Seagate Barracuda Green (AF): no warnings for newer firmware versions
	- Seagate Constellation.2 (SATA)
	- Seagate NAS HDD
	- Seagate Video 3.5 HDD

2014-06-15  Christian Franke  <franke@computer.org>

	drivedb.h, smartctl.8.in, smartd.8.in, INSTALL, NEWS, TODO, WARNINGS:
	Fix old Trac links.

2014-05-23 Alex Samorukov  <samm@os2.kiev.ua>

	os_freebsd.cpp: fixed #321 (compiler warning on 32 bit architectures),
	patch provided by tijl

2014-05-01  Christian Franke  <franke@computer.org>

	os_linux.cpp: Clarify copyright info in GPL header.
	smartctl.8.in, smartd.conf.5.in: Update '-d aacraid' info.

2014-04-30  Douglas Gilbert  <dgilbert@interlog.com>

	scsiprint.cpp:
	- Lowest aligned LBA > 0 not common so only output in that case

2014-04-28  Christian Franke  <franke@computer.org>

	autogen.sh: Allow automake 1.14, suppress 'subdir-objects' warning.
	Makefile.am: Add new 'compile' script to target 'maintainer-clean'.

2014-04-28  Douglas Gilbert  <dgilbert@interlog.com>

	scsicmds.h, scsicmds.cpp, scsiprint.h:
	- improve handling of modern SCSI disks (SAS SSDs)
	  show compliance (SCSI version), show 12 Gbps SAS-3
	  speed, and flag ZBC presence

2014-04-27  Alex Samorukov  <samm@os2.kiev.ua>

	drivedb.h:
	- Toshiba 3.5" MG03ACAxxx(Y) Enterprise HDD

2014-04-27  Christian Franke  <franke@computer.org>

	Fixes for aacraid patch:
	aacraid.h: Fix typo which breaks 32-bit build.
	os_linux.cpp:  Remove useless member variable afd.
	Fix error handling of /proc/devices parsing.
	Avoid unsafe sprintf().  Fix help text.

2014-04-27  Raghava Aditya  <raghava.aditya@pmcs.com>

	os_linux.cpp:
	- Added support for aacraid drivers
	- Created a new interface for aacraid
	         smartctl -d aacraid,H,L,ID /dev/sdx

2014-04-18  Douglas Gilbert  <dgilbert@interlog.com>

	scsicmds.cpp:
	- supported_vpd_pages(): lower response length to stop sense data
          noise on old disks (pre SPC-3)

2014-04-17  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Western Digital RE4 (SATA 6Gb/s): WD2000FYYX
	- Western Digital Se
	- Western Digital Caviar Green (AF, SATA 6Gb/s): 4TB
	- Western Digital Black: Rename, add 3TB, AF, remove extra AF entry
	- Western Digital Red: 4TB (ticket #322)
	- Western Digital Blue Mobile

2014-04-10  Christian Franke  <franke@computer.org>

	os_win32.cpp: Rework CSMI port scanning.
	Use bPortIdentifier instead of Phy array index for addressing.
	Ignore possibly bogus bNumberOfPhys (ticket #325).

2014-04-09  Douglas Gilbert  <dgilbert@interlog.com>

	scsiprint.cpp:
	- add guard to scsiPrintSasPhy() invocation; resolve ticket #204

2014-04-06  Christian Franke  <franke@computer.org>

	WARNINGS: Remove all entries.  Add link to Warnings page in Wiki.

2014-03-13  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Crucial/Micron RealSSD C300/M500: *SSD1 variant
	- SandForce Driven SSDs: ADATA SP300, ADATA SP800, ADATA SP900 DL2,
	Corsair Force SSD, Kingston SE50S3, Kingston SKC380S3,
	Smart Storage XceedIOPS2, VisionTek GoDrive
	- Indilinx Barefoot 3 based SSDs: OCZ VERTEX 450
	- JMicron based SSDs: ADATA SP600
	- Plextor M3/M5 (Pro) Series SSDs: Rename, add M5S (ticket #297), M5Pro

2014-03-06  Christian Franke  <franke@computer.org>

	drivedb.h:
	- OCZ Intrepid 3000 SSDs
	- Intel 320 Series SSDs: 'D' variant (ticket #315)
	- Intel DC S3500 Series SSDs: 'T' variant (ticket #315)

2014-03-05  Christian Franke  <franke@computer.org>

	ataprint.cpp: Check SCT Feature Control support bit for '-g/-s wcreorder'.
	This prevents bogus error messages if SCT support excludes SCT Feature
	Control command.
	atacmds.cpp: Fix error message text for SCT Feature Control command.

2014-03-03  Christian Franke  <franke@computer.org>

	smartctl.8.in, smartd.8.in, smartd.conf.5.in: Remove bashisms from
	shell script examples.

2014-03-03  Christian Franke  <franke@computer.org>

	Makefile.am, os_win32/smart*_res.rc.in: Set Copyright year in
	Windows VERSIONINFO resource.

2014-03-03  Christian Franke  <franke@computer.org>

	os_linux.cpp: Fix glob(3) max path count (ticket #317).

2014-03-03  Christian Franke  <franke@computer.org>

	configure.ac, Makefile.am: Add '--with-systemdenvfile=[FILE|no]'
	configure option to change or remove (ticket #316) the systemd
	EnvironmentFile setting.
	smartd.service.in: Add a reference to documentation (ticket #316).

2014-02-18  Alex Samorukov  <samm@os2.kiev.ua>
	os_freebsd.cpp: use %lu for iop->resp_sense_len

2014-02-16  Alex Samorukov  <samm@os2.kiev.ua>
	os_freebsd.cpp: mass updates, provided by Tijl Coosemans
	- Remove some unused private fields from some classes (found by Clang)
	- In freebsd_scsi_device::scsi_pass_through:
	* Make sure this function returns false on error instead of an error
	  code that gets converted to true.
	* Put printing of the "Incoming data" debug info right after the
	  cam_send_ccb() call and before the error checking to make debugging
	  easier.
	* When copying sense data make sure the fields in the CCB are actually
	  valid with CAM_AUTOSNS_VALID.  Also make sure that the size of the
	  sense data doesn't overflow max_sense_len.  This was the real cause for
	  the crash in ports/181836.
	* Add some debug printing on the sense data.

2014-02-03  Christian Franke  <franke@computer.org>

	dev_areca.cpp: Check cmds index before use (ticket #312).
	Make cmds array static const.

2014-01-01  Christian Franke  <franke@computer.org>

	Happy New Year! Update copyright year in version info.

2013-12-21  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Intel 525 Series SSDs
	- Intel 530 Series SSDs (ticket #308)

2013-12-19  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Seagate Samsung Spinpoint F4
	- Seagate Desktop SSHD
	- Seagate Constellation CS
	- Western Digital Red: *JFCX variant
	- Western Digital Green Mobile
	- Western Digital Elements / My Passport (USB): rename

2013-12-19  Christian Franke  <franke@computer.org>

	autogen.sh: automake 1.13.3 works.

2013-12-14  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Toshiba 2.5" HDD MK..65GSX: "... H" (USB?) variant
	- Toshiba 2.5" HDD MQ01UBD... (USB 3.0)
	- USB: Toshiba Stor.E Slim USB 3.0 (0x0480:0x0100)
	- USB: Toshiba Stor.E Basics (0x0480:0xa009)
	- USB: Toshiba Stor.E (0x0939:0x0b15)
	- USB: Seagate FreeAgent GoFlex (0x0bc2:0x5020)
	- USB: WD My Passport Ultra (0x1058:0x0741)
	- USB: WD Elements (0x1058:0x1048)
	- USB: Initio (0x13fd:0x1640) (ticket #295)
	- USB: LucidPORT (0x1759:0x5100)

2013-12-08  Christian Franke  <franke@computer.org>

	drivedb.h:
	- Apacer SDM4: SFDDA01C firmware (ticket #304).
	- Crucial/Micron RealSSD m4/C400/P400: M4 SSD1 (ticket #306).
	- Seagate Barracuda 7200.14: Check part number to avoid bogus
	firmware bug warning (ticket #298).

2013-11-23  Christian Franke  <franke@computer.org>

	configure.ac, utility.cpp: Remove __DATE__, __TIME__
	and SMARTMONTOOLS_CONFIGURE_DATE.
	This obsoletes OpenSUSE nobuild-date.patch.
	Reproducible builds are now supported.

2013-11-15  Alex Samorukov <samm@os2.kiev.ua>

       os_freebsd.cpp: Fix crash on FreeBSD 9.2 caused by wrong
       SCSI status check condition.
       os_freebsd.cpp: Print debug info on errors only if requested.

2013-11-07  Matt Kraai  <...>

	smartctl.cpp: Add missing stdlib.h.
	This fixes build on QNX 6.3.2 (ticket #300).

2013-11-07  Roger Röhrig  <...>

	drivedb.h: Intel DC S3500 Series SSDs: Add -F xerrorlba.

2013-11-07  Roger Röhrig  <...>

	atacmds.cpp: Fix Extended Comprehensive Error Log timestamp
	byte order on big endian machines.

2013-09-12  Christoph Egger  <christoph@debian.org>

	dev_areca.h: Fix build on kFreeBSD (Debian bug 717567).
	This obsoletes Debian kfreebsd.patch.

2013-08-17  Christian Franke  <franke@computer.org>

	examplescripts: Add scripts from Debian and Fedora packages.

2013-08-17  Christian Franke  <franke@computer.org>

	Add spaces between string literals and macro identifiers.
	This avoids the interpretation as user-defined literals if
	C++11 is enabled (g++ -std=gnu++11).

2013-08-15 Dan Lukes  <dan+smartmontools.changelog@obluda.cz>

	drivedb.h: Intel DC S3500 Series SSDs

2013-08-12  Christian Franke  <franke@computer.org>

	drivedb.h: Intel 320 Series SSDs: Add attribute 183 and 199.

2013-08-10  Christian Franke  <franke@computer.org>

	autogen.sh: automake 1.10.3, 1.12.6, and 1.13.4 work.
	The new automake 1.14 is left out for now due to the
	'subdir-objects' warning and the new 'compile' script.
	Add options '--force' and '--warnings=CATEGORY'.
2015-04-08 01:43:32 +00:00
rodent
3359987183 s/devel/www 2015-04-07 23:59:40 +00:00
rodent
1cec355fc3 +php-propro 2015-04-07 23:57:43 +00:00
rodent
ac48fc2e17 Added www/php-propro version 1.0.0 2015-04-07 23:56:41 +00:00
rodent
c96e3ae477 Import php55-propro-1.0.0 as www/php-propro.
Property proxy:  A reusable split-off of pecl_http's property proxy API.
2015-04-07 23:56:07 +00:00
rodent
a191b09a9a Add buildlink3.mk for this package. The new version of www/php-http needs
this.
2015-04-07 23:54:11 +00:00
rodent
ce664e9fe6 Updated devel/php-memcached to 2.2.0nb1 2015-04-07 23:10:13 +00:00
rodent
bac72f7862 Add igbinary option, disabled by default. This option enables binary
protocol communication with memcached. Bump PKGREVISION.
2015-04-07 23:09:39 +00:00
wiz
2bce4a7ced Updated math/py-rpy to 2.5.6 2015-04-07 22:14:27 +00:00
wiz
5d5edec070 Update to 2.5.6, in the hope it addresses PR 49817.
Release 2.5.6
=============

Bugs fixed
----------

- Detection of the R version during setup on Win8 (issues #255 and #258)

- Segmentation fault when converting :mod:`pandas` :class:`Series` with
  elements of type object (issue #264)

- The default converter from Python (non-rpy2) objects to rinterface-level
  objects was producing robjects-level objects whenever the input was of
  type :class:`list` (discovered while fixing issue #264)

- Implemented suggested fix for issue with unlinking files on Windows
  (issue #191)

- Testing rpy2 in the absence of ipython no longer stops with an error
  (issue #266)


Release 2.5.5
=============

Bugs fixed
----------

- Crash (segfault) when querying an R object in an R environment triggers an
  error (symbol exists, but associated values resolves to an error - issue #251)

- Change in the signature of `rcall` was not updated in the documentation
  (issue #259)

- Minor update to the documentation (issue #257)


Release 2.5.4
=============

Bugs fixed
----------

- Filter PNG files on size, preventing empty files causing trouble to be
  ipython notebook rendering of graphics later on (slight modification of
  the pull request #39)

- Fix installation left unresolved with rpy2-2.5.3 (issue #248)

- Possible segfault with Python 3.4 (issue #249)


Release 2.5.3
=============

Changes
-------

- `setup.py` has `install_requires` in addition to `requires` in the hope to
   fix the missing dependency with Python 2 (:mod:`singledispatch` is required
   but not installed).

Bugs fixed
----------

- Extracting configuration information from should now work when R is emitting a warning (issue #247)

- On OS X the library discovery step can yield nothing (see issue #246). A tentative fix is to issue
  a warning and keep moving.


Release 2.5.2
=============

Bugs fixed
----------

- String representation of :class:`robjects.R` (issue #238)

- Check during `build_ext` if unsupported version of R (pull request #32)

- HTMl display of columns of factors in a DataFrame (issue #236)

- HTML display of factors (issue #242)


Release 2.5.1
=============

Bugs fixed
----------

- Require singledispatch if Python 3.3 (issue #232)

- Fixed bug when R spits out a warning when asked configuration information (issue #233)

- Restored printing of compilation information when running `setup.py`

- Fixed installation issue on some systems (issue #234)

- Workaround obscure failure message from unittest if Python < 3.4 and
  :mod:`singledispatch` cannot be imported (issue #235)


Release 2.5.0
=============

New features
------------

- Experimental alternative way to preserve R objects from garbage collection.
  This can be activated with `rinterface.initr(r_preservehash=True)` (default
  is `False`.

- :class:`GGPlot` object getting a method :meth:`save`
  mirroring R's `ggplot2::ggsave()`.

- The conversion system is now using generics/single dispatch.

- New module :mod:`rpy2.ipython.html` with HTML display for rpy2 objects

- [Experimental] New function :func:`robjects.methods.rs4instance_factory`
  to type RS4 objects with more specificity.

Changes
-------

- The script `setup.py` was rewritten for clarity and ease of maintenance.
  Now it only uses `setuptools`.


Release 2.4.4
=============

Bugs fixed
----------

- Use `input` rather than `raw_input` in the default console callback
  with Python 3 (fixes issue #222)

- Issues with conversions, pandas, and rmagic (fixes issue #218 and more)


Release 2.4.3
=============

Bugs fixed
----------

- `geom_raster` was missing from `rpy2.robjects.lib.ggplot2` (pull request #30)

- Fixed issue with SVG rendering in ipython notebook (issue #217)

- Regression with `rx2()` introduced with new conversion (issue #219)

- Fixed documentation (missing `import`) (issue #213)


Release 2.4.2
=============

Bugs fixed
----------

- Assigning an R `DataFrame` into an environment was failing if
  the conversion for Pandas was activated. (Issue #207)


Release 2.4.1
=============

Bugs fixed
----------

- :meth:`rpy2.ipython` fixed spurious output to notebook cells.



Release 2.4.0
=============

Changes
-------

- Conversion system slightly changed, with the optional
  conversions for :mod:`numpy` and :mod:`pandas` modified
  accordingly. The changes should only matter if using
  third-party conversion functions.

- The Python 3 version is now a first class citizen. `2to3`
  is no longer used, and the code base is made directly
  compatible with Python. This lowers significantly the
  installation time with Python 3
  (which matters when developping rpy2).

- The default options to initialize R (`rpy2.rinterface.initoptions') are no longer
  `('rpy2', '--quiet', '--vanilla', '--no-save')` but now
  `('rpy2', '--quiet', '--no-save')`.

- :class:`robjects.vectors.ListVector` can be instanciated from
  any objects with a method `items()` with the expectation that the method
  returns an iterable of (name, value) tuples, or even be an iterable
  of (name, value) tuples.

New features
------------

- For instances of :class:`rpy2.robjects.Function`,
  the `__doc__` is now a property fetching information
  about the parameters in the R signature.

- Convenience function :func:`rpy2.robjects.packages.data`
  to extract the datasets in an R pacakges

- :mod:`ipython`'s `rmagic` is now part of :mod:`rpy`. To use, `%load_ext
  rpy2.ipython` from within IPython.

- new method :meth:`rpy2.rinterface.SexpEnvironment.keys`, returnings
  the names in the environment as a tuple of Python strings.

- convenience class :class:`robjects.packages.InstalledPackages`, with a companion function
  :func:`robjects.packages.isinstalled`.

- new class :class:`rinterface.SexpSymbol` to represent R symbols

Bugs fixed
----------

- :meth:`rpy2.rinterface.Sexp.do_slot` was crashing when
  the parameter was an empty string (PR #155)



Release 2.3.10
==============

Bugs fixed
----------

- `setup.py build` was broken when new R compiled with OpenMP (Issue #183)

Release 2.3.9
=============

- Changes in pandas 0.13.0 broke the rpy2 conversion layer (Issue #173)


Release 2.3.8
=============

Bugs fixed
----------

- Crash with R-3.0.2. Changes in R-3.0.2's C API coupled to a strange behaviour
  with R promises caused the problem. (PR #150)


Release 2.3.7
=============

Bugs fixed
----------

- ggplot2's "guides" were missing

- ggplot2's "theme_classic" was missing (PR #143)

- ggplot2's "element_rect" was missing (PR #144)

- :func:`rpy2.interactive.packages` was broken (PR #142)


Release 2.3.6
=============

Bugs fixed
----------

- Several reports of segfault on OS X (since rpy2-2.3.1 - PR #109)

- More fixes in converting `DataFrames` with dates from `pandas`


Relase 2.3.5
============

Bugs fixed
----------

- Missing mapping to ggplot2's `scale_shape_discrete` function

- Better handling of dates in Pandas

- Constructor for POSIXct improved (and fixed)

Changes
-------

- The attribute :attr:`rclass` is no longer read-only and can be set
  (since R allows it)

- Importing the module :mod:`rpy2.interactive` no longer activates
  event processing by default (triggering concurrency errors
  when used with ipython).

New features
------------

- New module :mod:`rpy2.interactive.ipython` (so far plotting
  automatically a ggplot2 figure in the iPython's console)

- It is now possible to set the :attr:`rclass`.


Relase 2.3.4
============

Bugs fixed
----------

- Spurious error when running unit tests with Python 3 and numpy
  installed

- Missing mapping to ggplot2's `geom_dotplot` function

- Warnings are not longer printed (see Changes below)

Changes
-------

- Bumped target version of ggplot2 to 0.9.3.1

- Warnings are not longer printed. The C-level function in R became
  hidden in R-3.0, and the cost of an R-level check/print is relatively
  high if the R code called is very short. This might evolve into
  printing warnings only if interactive mode in Python (if this can
  be checked reliably).


Release 2.3.3
=============

Bugs fixed
----------

- Some of the data.frames converted from :mod:`pandas` were triggering
  a :class:`TypeError` when calling :func:`repr`

- In :mod:`rpy2.robjects.lib.ggplot2`, a mapping to `coord_fixed` was
  missing (PR #120)

- Using the parameter `lib_loc` in a call to
  :func:`rpy2.robjects.packages.importr` was resulting in an error (PR #119)

- Creating a `layer` through the `rpy2.robjects.lib.ggplot2` interface did
  not accept parameters (PR #122)

- Testing the Python version was crashing of a number of unsupported Python
  versions (<= 2.6) (PR #117)

New features
------------

- New module pandas2ri to convert from mod:`pandas` `DataFrame` objects

- New classes :class:`rpy2.robjects.lib.grid.Unit` and
  :class:`rpy2.robjects.lib.grid.Gpar` to model their counterparts in
  R's `grid` package as they were previously missing from rpy2.


Release 2.3.2
=============

Bug fixed
---------

- Building on Win64 (pull request #6)

- Fetching data from an R package through `importr` was masking
  any R object called `data` in that package. The data are now
  under the attribute name `__rdata__`. This is not completely
  safe either, although much less likely, a warning will
  be issued if still masking anything.


Changes
-------

- More informative error message when failing to build because `R CMD config`
  does not return what is expected

Release 2.3.1
=============

Bugs fixed
----------

- default console print callback with Python (issue #112 linked to it)

- deprecation warnings with ggplot2 (issue #111 and contributed patch)
2015-04-07 22:14:18 +00:00
hiramatsu
a186e2ea00 Updated archivers/gsharutils to 4.15. 2015-04-07 22:09:25 +00:00
hiramatsu
4449e03c9c Update archivers/gsharutils to 4.15.
This update is provided from kj Woolley in PR 49770,
with a patch by me for NetBSD 6.

Changes from previous:

Version 4.15 - February 2015, by Bruce Korb

* shar will no longer choke on 64 bit windows
* unshar has a compiler warning fix
* Happy 2015 copyright
* PO file updates

Version 4.14.2 - December 2014, by Bruce Korb

* translation updates
* use ftello, fseeko and fflush
* augment copyright marks in shar.c and shar-std.def
* Happy 2014 copyright dates
* fix up man pages (use newer doc generation code)

Version 4.14 - October 2013, by Bruce Korb

* documentation, obscure usage, FSF address
2015-04-07 22:08:36 +00:00
tnn
a5ec43770d Unbreak C++ on NetBSD, by popular demand.
Background:
LLVM 3.6 upstream added support for being a native toolchain on NetBSD.
This changed the default C++ runtime library from libstdc++ to libc++.
Patch this in pkgsrc's clang so we continue to use libstdc++ (for now)
Proper support for libc++ should be added later (perhaps w/ PKG_OPTIONs).
Thanks to Joerg for explaining the problem.
2015-04-07 22:05:36 +00:00
adam
244508f0d0 Updated devel/cmake to 3.2.1 2015-04-07 20:54:26 +00:00
adam
d5e893e8cb Changes 3.2.1:
* CMake learned to support unicode characters *encoded as UTF-8* on
  Windows.  This was already supported on platforms whose system APIs
  accept UTF-8 encoded strings. Unicode characters may now be used in
  CMake code, paths to source files, configured files such as ".h.in"
  files, and other files read and written by CMake.  Note that because
  CMake interoperates with many other tools, there may still be some
  limitations when using certain unicode characters.

* The "Compile Features" functionality is now aware of features
  supported by more compilers, including:

  * Apple Clang ("AppleClang") for Xcode versions 4.4 though 6.1.

  * GNU compiler versions 4.4 through 5.0 on UNIX and Apple ("GNU").

  * Microsoft Visual Studio ("MSVC") for versions 2010 through 2015.

  * Oracle SolarisStudio ("SunPro") version 12.4.

* The "add_custom_command()" and "add_custom_target()" commands
  learned a new "BYPRODUCTS" option to specify files produced as side
  effects of the custom commands.  These are not outputs because they
  do not always have to be newer than inputs.

* The "file(GENERATE)" command can now generate files which are used
  as source files for buildsystem targets.  Generated files
  automatically get their "GENERATED" property set to "TRUE".

Deprecated and Removed Features:

* Files written in the "cmake-language(7)", such as "CMakeLists.txt"
  or "*.cmake" files, are now expected to be encoded as UTF-8.  If
  files are already ASCII, they will be compatible.  If files were in
  a different encoding, including Latin 1, they will need to be
  converted.

* The "FindOpenGL" module no longer explicitly searches for any
  dependency on X11 libraries with the "FindX11" module.  Such
  dependencies should not need to be explicit. Applications using X11
  APIs themselves should find and link to X11 libraries explicitly.
2015-04-07 20:53:48 +00:00
wiz
d22692c4a1 Updated x11/xf86-input-keyboard to 1.8.1 2015-04-07 15:36:43 +00:00
wiz
0aae9f93b6 Update to 1.8.1:
Two bugfixes, two cleanups. The fix for 89653 fixes a dead keyboard on Linux
machines, though note that use of this driver under Linux is considered very
much a legacy use case. Use evdev or the new libinput driver instead.
Egbert's fix untangles overlaps between multimedia keys and the jp
Henkan/Muhenkan keys.

Alan Coopersmith (1):
      Mark xf86OSKbdPreInit as _X_EXPORT in header to match definitions

Egbert Eich (1):
      Detangle inet keys and jp Henkan/ Muhenkan keys

Peter Hutterer (3):
      Init LEDs to zero before querying the value
      linux: bring our process group to the foreground (#89653)
      keyboard 1.8.1
2015-04-07 15:36:02 +00:00
fhajny
c501a12c45 Updated sysutils/rsyslog to 8.9.0 2015-04-07 14:49:17 +00:00
fhajny
105053c8ed Updated sysutils/liblognorm to 1.1.1 2015-04-07 14:48:50 +00:00
fhajny
3bd4003dbf Update rsyslog to 8.9.0.
Version 8.9.0 [v8-stable] 2015-04-07
- omprog: add option "hup.forward" to forwards HUP to external plugins
- imuxsock: added capability to use regular parser chain
- 0mq: improvements in input and output modules
- imtcp: add support for ip based bind for imtcp -> param "address"
- bugfix: MsgDeserialize out of sync with MsgSerialize for StrucData
- bugfix imfile: partial data loss, especially in readMode != 0
- bugfix: potential large memory consumption with failed actions
- bugfix: omudpspoof: invalid default send template in RainerScript format
- bugfix: size-based legacy config statements did not work properly
- build system: added option --without-valgrind-testbench
- rsyslogd: fix misleading typos in error messages

Version 8.8.0 [v8-stable] 2015-02-24
- omkafka: add support for dynamic topics and auto partitioning
- imtcp/imptcp: support for broken Cisco ASA TCP syslog framing
- omfwd: more detailled error messages in case of UDP send error
- TLS syslog: enable capability to turn on GnuTLS debug logging
- bugfix: $AbortOnUncleanConfig did not work
- improve rsyslogd -v output and error message with meta information
  version number is now contained in error message and build platform in
  version output
- bugfix imtcp: octet-counted framing cannot be turned off
- bugfix: build problems on Illuminos
- bugfix: invalid data size for iMaxLine global property
- bugfix: negative values for maxMessageSize global parameter were permitted
2015-04-07 14:48:28 +00:00
fhajny
c9b817fe10 Update liblognorm to 1.1.1.
Version 1.1.1, 2015-03-09
- fixed library version numbering
- added new parser syntaxes
- bugfix: function ln_parseFieldDescr() returns state value due
  to unitialized variable. This can also lead to invalid returning
  no sample node where one would have to be created.
2015-04-07 14:47:11 +00:00
yyamano
94372767d7 Updated lang/scala to 2.11.6 2015-04-07 14:24:13 +00:00
yyamano
cf35e7989e Upgrade to 2.11.6 from 2.11.1.
http://www.scala-lang.org/news/2.11.6

Scala 2.11.6 is a bugfix release that is binary compatible with
previous releases in the Scala 2.11 series. We would like to highlight
the following changes:

* We fixed a cross-site scripting vulnerability in Scaladoc's
  JavaScript. Many thanks to @todesking for discovering this,
  suggesting a fix, and for delaying disclosure until this release!
  This bug could be used to access sensitive information on sites
  hosted on the same domain as Scaladoc-generated documentation. All
  previous versions of Scaladoc are affected (Scala 2.10.5 includes
  the fix as well). We do recommend, as a general precaution, to host
  Scaladoc documentation on its own domain.
* SI-9089 repl is now much less crash-and-burny when calling a
  function (which turns out to be a common thing people do in a
  REPL). Also, apologies to the author of SI-9022, who reported this
  before the bug was discovered and you had to wait in line for like
  three hours on a Tuesday afternoon. Or, maybe, that honor should go
  to the enigmatic dk14.
* SI-8759 no need to enter almost half the konami code to enter a
  right square bracket in the REPL (via jline 2.12.1). Thank you for
  implementing the jline fix, @michael72, and kudos to @jdillon and
  @trptcolin for cutting a new jline release just for us!

http://www.scala-lang.org/news/2.11.5

Scala 2.11.5 is a bugfix release that is binary compatible with
previous releases in the Scala 2.11 series. We would like to highlight
the following changes:

* heathermiller's SI-6502 Reenables loading jars into the running REPL
* mpociecha's The alternative, flat representation of classpath elements
* gbasler's Avoid the ¡CNF budget exceeded¢ exception via smarter
  translation into CNF
* adriaanm's SAMmy: eta-expansion, overloading, existentials
* A great number of documentation improvements - thank you (and, to
  those appearing for the first time in our release notes, welcome!):
  @kanielc, @lymia, @stevegury, @vigdorchik, @gourlaysama, @ichoran,
  @retronym, @xuwei-k, @dickwall, @phaller.

http://www.scala-lang.org/news/2.11.4

Scala 2.11.4 is a bugfix release that is binary compatible with
previous releases in the Scala 2.11 series. The changes include:

* Scala shell (REPL) is more friendly to Ctrl+D. It leaves your
  terminal in a clean state and suggests using :quit the next time
  (see #3902). Kudos to @gourlaysama!
* REPL uses different colors when printing references to vals and
  types. Pass -Dscala.color to enable that behavior (see
  #3993). Thanks to @puffnfresh!
* The Scala specification received a fair amount of love and became
  much more beautiful. It has got syntax highlighting (#3984),
  linkable headers, and a side bar with TOC (#3996). A few final
  touches has been merged that fix typos and mistakes stemming from
  automatic Latex to Markdown conversion we've done a while
  ago. Thanks for attention to details @gourlaysama, @som-snytt and
  roberthoedicke!
* Non-deterministic pattern matching warnings has been fixed
  (SI-7746). Many thanks to @gbasler for diving deep (#3954) into
  logical formulas constructed by our pattern matcher implementation!

https://groups.google.com/forum/#!msg/scala-internals/SSD9BNJaFbU/rACBkHrs2JEJ

> I've got an important information to share. I'd like to announce the
> Scala 2.11.3 artifacts as being dead on arrival. The 2.11.3
> artifacts that got released to Maven Central have a critical bug
> related to binary compatibility. Please stick to using Scala 2.11.2
> until 2.11.4 is released which is planned to happen as soon as we
> fix all critical bugs found in Scala 2.11.3. The rest of my email
> will discuss the events that led to a broken Scala release, next
> steps we're planning to take.

http://www.scala-lang.org/news/2.11.2

Scala 2.11.2 is a bugfix release that is binary compatible with
previous releases in the Scala 2.11 series. The changes include:

* Several issues in the collections library were resolved, most
  notably equality on ranges (SI-8738).
* The optimizer no longer eliminates division instructions that may
  throw an ArithmeticException (SI-7607).
* The -Xlint compiler flag is now parameterized by individual
  warnings. This is intended to replace the -Ywarn-... options, for
  instance, -Xlint:nullary-unit is equivalent to
  -Ywarn-nullary-unit. Run scalac -Xlint:help to see all available
  options. Kudos to @som-snytt!x
* TypeTags and Exprs are now serializable (SI-5919).
2015-04-07 14:21:43 +00:00
fhajny
4ff2971a34 Updated sysutils/collectd to 5.4.2 2015-04-07 13:21:24 +00:00
fhajny
dc49c95714 Update collectd to 5.4.2.
- Build system: Numerous fixes.
- collectd: A use-after-free has been fixed in the parse_value() function.
- collectd: Fix carriage return sign in types_list
- collectd: Fix programming error in {{GitFile|src/configfile.c}}
- collectd: An off-by-one error has been fixed in the strstripnewline()
  function.
- collectd: Use the complain mechanism to report filter chain write failures.
- collectd: Spelling and grammar of error messages have been fixed.
- collectdctl: Fixed buffering issues which caused trouble on AIX and
  Solaris.
- Documentation: Details and example about multi-instance filterchain targets
  have been added.
- Documentation: The CollectStatistics option of the RRDCacheD plugin has
  been documented.
- Documentation: The Write Redis plugin has been documented.
- Documentation: The GraphiteSeparateInstances and GraphiteAlwaysAppendDS
  options of the AMQP plugin have been documented.
- Documentation: Documentation of the AutoLoadPlugin option has been improved.
- Aggregation plugin: utils_vl_lookup: A race when creating user objects has
  been fixed.
- CPU plugin: Temperature code for Mac OS X has been removed.
- cURL, cURL-JSON, cURL-XML and Write HTTP plugins: Call curl_global_init()
  in the plugins' init() callback.
- cURL and memcachec plugins: Fix calculation of gauge, average, minimum
  and maximum. Previously, they were calculated from the start of the daemon,
  which is not the documented behavior.
- cURL-JSON plugin: A bug, which triggered when two URLs with a long common
  prefix were configured, was fixed.
- DBI plugin: Compatibility with new versions of libdbi has been restored.
- Exec, UnixSock plugins: Fix parsing of the time option of the PUTNOTIF
  command.
- IPMI plugin: A conflict with the Java plugin over the SIGUSR2 signal
  has been fixed.
- Java plugin: Conversion from Java's time representation to collectd's
  representation has been fixed.
- Java plugin: Make sure cjni_thread_detach() is called on all paths.
- LogFile and SysLog plugins: Avoid total silence in case of
  a misconfiguration.
- Network plugin: Support for recent versions of gcrypt has been added.
- Network plugin: Robustness of the client connecting behavior has been
  improved.
- Python plugin: Don't create empty meta_data_t objects.
- Python plugin: Fix Py list length check in cpy_build_meta().
- Python plugin: The interval member was fixed to export seconds as a double.
- RRDtool and RRDCacheD plugins: A memory leak when creating RRD files
  has been fixed.
- SNMP plugin: Fix a memory leak.
- Statsd plugin: Support for samplerates in timer metrics was added.
- Swap plugin: Fix behavior under OpenVZ by making cached optional.
- Threshold plugin: Population of the time field in notifications has been
  added.
- libvirt plugin: Only gather stats for running domains.
- LVM plugin: An issue with Volume Groups (VGs) without Logical Volumes
  (LVs) has been fixed.
- Write Graphite plugin: Escape characters not supported by Graphite.
- Write HTTP plugin: Make callback names context-dependent.
- Write Redis plugin: A formatting bug, which resulted in totally unusable
  numbers being transmitted to Redis, was fixed.
- Write Riemann plugin: Receive acknowledge message when using TCP.
2015-04-07 13:20:41 +00:00
fhajny
778a101e2c collectd-dns needs net/libpcap on NetBSD, built-in one lacks some headers. 2015-04-07 13:18:25 +00:00
dsainty
ebcdf25819 Recognise lower-case "netbsd" as BSD.
NB: This doesn't fix the threads portability issues yet for NetBSD, but gets
through configuration.
2015-04-07 12:54:36 +00:00
dsainty
627d46e099 NetBSD's tar (6.1) does an exit(1) on the source archive, complaining:
Invalid header, starting valid header search.

As a workaround: EXTRACT_USING=gtar
2015-04-07 12:32:59 +00:00
rodent
76c12fa805 +php-igbinary - packaged originally in pkgsrc-wip by mbowie@buzmo.com 2015-04-07 11:25:02 +00:00