Commit graph

316 commits

Author SHA1 Message Date
asau
419182fa33 Update to Chemtool 1.6.12.
Changes since previous package:

Chemtool-1.6.12 (June 7, 2009)

This release contains another round of fixes for label positioning
and clipping of bonds around labels. The pen color button has been
replaced by a drop-down menu, and a "white" pen for drawing on
colored backgrounds has been added. Chemtool now automatically
resizes its main window on small (netbook) screens, and it can also
be used in an non-interactive mode to create postscript (etc.) output
from previously created chemtool structure files. The Polish
translation has been updated, and a new Bulgarian translation
has been added.

Chemtool-1.6.11 (August 26, 2007)

This release contains numerous fixes for label positioning and
sub/superscript kerning. Bond length and zoom factor are now
stored with the drawing, bond clipping of multiple bonds was
improved and new special key sequences for circled plus and
minus symbols were added. The configuration dialog now lists
gtklp among the supported print commands. Source layout and
build system were reorganized to make addition of translations
easier, and a Portuguese localization file was added.

Chemtool-1.6.10 (April 8th, 2007)

This release adds PNG export, round brackets, text output in
east-european locales and some new templates. Several bugs
related to special character handling in GTK2, screen display
of labels and exporting to EPS and SVG have been fixed. The
configuration dialog has been redone and now includes support
for kprinter, and the labeling shortcuts no longer interfere
with GTK's menu accelerators.
2009-09-05 13:43:26 +00:00
wiz
109c80313e Change default for zip extraction to leave files as they are.
Previously, zip extraction by default converted to lower case.

Fix some packages that need it and remove -L from some packages
that manually set it.
2009-08-25 11:56:34 +00:00
wiz
5334cc804c Update to 14.4:
Changes: This release adds a feature that can automatically choose
food quantities when a meal is to have a particular amount of fat,
protein, or carbohydrate. Currently, you can modify a food quantity
from the meal list by typing the food number and a new quantity.
For example, "2 100g" means change food #2 to 100 grams. This
feature allows the user to type "protein", "carb", or "fat" instead
of an explicit new quantity. For example, "2 carb" indicates that
you want the second food's quantity changed so that the meal's
Daily Value for non-fiber carb is satisfied.

* 14.3

Changes: This release modifies the default polyunsaturated fat
reference values.

* 14.2

Changes: This release revises the default fatty acid reference
values.

* 14.1

Changes: This release updates the Omega-3 defaults.

* 14.0

Changes: This release introduces the new USDA Nutrient Database
SR21, and allows current nut installations to have their existing
meal records reinterpreted with the new database.
2009-08-09 23:15:43 +00:00
wiz
d70523df21 Remove USE_DIRS from pkgsrc.
Shared directories can now be created independently by the pacakges
needing them and will be removed automatically by pkg_delete when empty.

Packages needing empty directories can use the @pkgdir command in PLIST.

Discussed and ok'd in thread starting at
http://mail-index.netbsd.org/tech-pkg/2009/06/30/msg003546.html
2009-07-22 09:01:16 +00:00
joerg
2e6223b450 Not MAKE_JOBS_SAFE. 2009-07-16 15:17:22 +00:00
joerg
b1a3456b08 Fix patch-aa sum. 2009-07-16 14:53:19 +00:00
joerg
65332f740c user-destdir support 2009-07-08 15:40:54 +00:00
joerg
75a3134906 user-destdir support 2009-07-08 15:26:26 +00:00
joerg
4f78c1dc92 user-destdir support 2009-07-08 15:14:44 +00:00
joerg
1e46af26d0 user-destdir 2009-07-08 15:10:58 +00:00
joerg
c569c6a51f Mark packages as MAKE_JOBS_SAFE=no that failed in a bulk build with
MAKE_JOBS=2 and worked without.
2009-06-30 00:07:09 +00:00
joerg
8ed29be0de Drop @unexec, pkg_delete will do the right thing. 2009-06-14 18:11:08 +00:00
joerg
e209761d06 Remove @dirrm entries from PLISTs 2009-06-14 17:28:16 +00:00
rillig
78b241c43a Made the Makefile simpler.
Removed unnecessary .gz suffix from man pages.
2009-06-12 19:07:29 +00:00
wiz
60f460ab01 Use standard location for LICENSE line (in MAINTAINER/HOMEPAGE/COMMENT
block). Uncomment some commented out LICENSE lines while here.
2009-05-19 08:59:00 +00:00
zafer
a44f340eba update homepage, update master site. 2009-05-16 23:40:13 +00:00
zafer
dda86a3379 fetch from gentoo mirror. 2009-05-16 23:28:13 +00:00
zafer
d82d07411e update homepage and master site. new master needs active ftp. it doesn't work with EPSV. commented out. 2009-05-16 23:19:19 +00:00
zafer
96a957c6d6 update master site. 2009-05-16 22:11:53 +00:00
zafer
6b94159f4f update master site and homepage. 2009-05-16 22:01:20 +00:00
zafer
ee30d3fd21 update master site 2009-05-16 21:56:15 +00:00
zafer
a14327c7d2 Add master site. Remove broken ones. OK'd by obache. 2009-04-28 19:07:31 +00:00
joerg
25a80fb4ab Remove PYBINMODULE. All it did was mark some packages as not available
on some platforms that lacked shared library support in the past. The
list hasn't been maintained at all and the gain is very limited, so just
get rid of it.
2009-03-05 18:51:26 +00:00
joerg
1f9d754f97 Reset maintainer, mail bounced 2009-02-17 13:02:20 +00:00
wiz
285b7dd776 Bump PKGREVISION for libXaw API depends bump due to libXaw8 removal. 2008-11-10 17:21:33 +00:00
he
b021813da0 Bump the PKGREVISION for all packages which depend directly on perl,
to trigger/signal a rebuild for the transition 5.8.8 -> 5.10.0.

The list of packages is computed by finding all packages which end
up having either of PERL5_USE_PACKLIST, BUILDLINK_API_DEPENDS.perl,
or PERL5_PACKLIST defined in their make setup (tested via
"make show-vars VARNAMES=...").
2008-10-19 19:17:40 +00:00
schwarz
f19ffea3ac updated to MUMmer3.20 2008-10-11 22:01:13 +00:00
gdt
bd75824032 Add license, and rewrite RESTRICTED based on it (basically similar). 2008-09-12 20:10:44 +00:00
joerg
3b0d97b0de Add DESTDIR support. 2008-06-20 01:09:05 +00:00
joerg
ba171a91fa Add DESTDIR support. 2008-06-12 02:14:13 +00:00
joerg
3d8ef5a52d Second round of explicit pax dependencies. As reminded by tnn@,
many packages used to use ${PAX}. Use the common way of directly calling
pax, it is created as tool after all.
2008-05-26 02:13:14 +00:00
joerg
a8a3c01339 Explicitly add pax dependency in those Makefiles that use it (or have
patches to add it). Drop pax from the default USE_TOOLS list.
Make bsdtar the default for those places that wanted gtar to extract
long links etc, as bsdtar can be built of the tree.
2008-05-25 21:42:20 +00:00
obache
4e6c8cda67 Fix typo intoroduced by mechanical DESTDIR fix.
noticed by Hasso Tepper in PR 38687.
2008-05-18 12:28:17 +00:00
joerg
a77e7015fe Update PYTHON_VERSIONS_COMPATIBLE
- assume that Python 2.4 and 2.5 are compatible and allow checking for
fallout.
- remove PYTHON_VERSIONS_COMPATIBLE that are obsoleted by the 2.3+
default. Modify the others to deal with the removals.
2008-04-25 20:39:06 +00:00
joerg
ac885f3057 Fix DESTDIR installation. 2008-04-07 16:33:03 +00:00
joerg
bee5d55084 Fix DESTDIR installation. 2008-04-04 23:45:57 +00:00
tnn
7065ab1326 Add misc/dvtm, biology/mopac, emulators/yabause. 2008-03-09 18:28:54 +00:00
tnn
8d44eb9488 Import mopac-7.0 as pkgsrc/biology/mopac.
Mopac is semiempirical molecular energy calculation program for
chemistry and physics.

From pkgsrc-wip, original from PR pkg/18046 by Osamu OISHI.
2008-03-09 17:52:57 +00:00
jlam
075003a60c Mechanical changes to add full DESTDIR support to packages that install
their files via a custom do-install target.
2008-03-03 00:51:43 +00:00
obache
2c581bd82c Update nut to 13.2. Should close PR 34466.
Pkgsrc changes:
    Add DESTDIR support.

Recent changes (cannot available changes from 10.18 to 12.6 anymore).
13.2:
This release makes minor changes to the analysis reset and food suggestion
functions.
13.1:
This release changes some fatty acid defaults to allow more saturated fat when
eating low-carb, and to raise the maximum amount of long-chain Omega-3.
13.0:
This release introduces the new USDA Nutrient Database SR20 and allows current
NUT installations to have their existing meal records reinterpreted with the new
database.
12.7:
This release uses a new food name abbreviation algorithm so that food names are
more informative and less cryptic.
2008-01-30 05:43:55 +00:00
wiz
a7c8e0cd61 Reset maintainer on his request. 2008-01-19 09:16:17 +00:00
wiz
2e9cb6a61a Update MASTER_SITES and HOMEPAGE. From Zafer Aydogan. 2007-12-29 10:17:46 +00:00
reed
466fc155f1 Old MASTER_SITES was no longer working.
Fix from Zafer in PR #37270.
2007-11-06 20:16:58 +00:00
rillig
6aecf48699 Added mk/misc/category.mk, which contains the definitions that are only
useful for category Makefiles, as opposed to bsd.pkg.subdir.mk, which is
also relevant for the top-level directory. Adjusted the category Makefiles.
2007-08-13 08:12:41 +00:00
wiz
daf939404d Finish move of pymol to py-mol. 2007-08-12 03:21:06 +00:00
wiz
34e010a0f7 Reimport biology/pymol as py-mol, and change its PKGNAME to follow the
python-in-pkgsrc standards.

Add conflict with old pkgname.

Keep PKGREVISION even though the package has a new name to confuse the
users less.
2007-08-12 03:19:18 +00:00
joerg
4148df960c Fix path to python. Use postive PYTHON_VERSIONS_ACCEPTED.
Bump revision.

XXX Should be renamed to follow python module naming convention.
2007-08-11 18:13:13 +00:00
wiz
8c6e1744ac Remove dead MASTER_SITES. From Zafer Aydogan. 2007-06-08 18:33:05 +00:00
joerg
161c920c15 Prepare for switching to NO_MTREE=yes. 2007-03-24 19:21:18 +00:00
joerg
ade72c3211 Forcefully depend on pkg-config as rillig@ forced a failure otherwise
and that breaks the gtk detection of chemtool.
2007-03-04 11:56:40 +00:00
wiz
601583c320 Whitespace cleanup, courtesy of pkglint.
Patch provided by Sergey Svishchev in private mail.
2007-02-22 19:26:05 +00:00
perry
469f40c9c2 remove myself as maintainer 2007-02-15 22:37:05 +00:00
joerg
c4ffd0cf86 Modular Xorg support. 2007-01-26 22:05:14 +00:00
rillig
ad06e02f5b Updated mummer to 3.19.
Changes since 3.18:
- More documentation.
2007-01-18 19:13:10 +00:00
joerg
40404f7c5c Modular Xorg support. 2007-01-11 11:37:07 +00:00
joerg
67ccc44008 Needs GLU. Bump revision. 2007-01-08 17:23:06 +00:00
rillig
2829e658f2 Mechanically replaced man/* with ${PKGMANDIR}/* in the definition of
INSTALLATION_DIRS, as well as all occurrences of ${PREFIX}/man with
${PREFIX}/${PKGMANDIR}.

Fixes PR 35265, although I did not use the patch provided therein.
2007-01-07 09:13:46 +00:00
rillig
85d1724d97 Fixed pkglint warnings.
Replaced PYTHON_VERSIONS_ACCEPTED with PYTHON_VERSIONS_INCOMPATIBLE,
since the package will probably work with future Python versions, too.
2007-01-06 14:21:15 +00:00
joerg
e7a156d8f4 Fix path to csh in scripts. Bump revision. 2006-12-06 16:52:20 +00:00
wiz
18e3283474 Update MASTER_SITES and/or HOMEPAGE, from Sergey Svishchev. 2006-10-04 20:46:42 +00:00
rillig
91256020a8 Fixed one unit test. 2006-10-02 21:34:28 +00:00
obache
e896edb7fe Rename variable MAKEFILE to MAKE_FILE. 2006-09-09 02:41:53 +00:00
wiz
f5eca11daa Remove share/fonts, if unused. 2006-07-08 06:33:56 +00:00
minskim
b17d94b7d0 Add csh:run to USE_TOOLS because this package installs csh scripts.
Bump PKGREVISION.
2006-06-21 19:02:03 +00:00
minskim
7667307179 Reorder dirrm@'s so that the package is deinstalled propertly.
PKGREVISION will be bumped with another change shortly.
2006-06-21 19:01:12 +00:00
minskim
2b538d320d Fix CHECK_INTERPRETER errors and warnings. Bump PKGREVISION. 2006-06-05 23:34:42 +00:00
gdt
b9eb7ca9aa add LICENSE 2006-05-02 13:47:56 +00:00
rillig
9fc2d7d281 Removed the superfluous "quotes" and 'quotes' from variables that don't
need them, for example RESTRICTED and SUBST_MESSAGE.*.
2006-04-22 09:22:05 +00:00
joerg
220e03980a Fix build with newer versions of GNU make. 2006-04-19 16:50:36 +00:00
wiz
02f8f7c52d Bump BUILDLINK_ABI_DEPENDS.png and PKGREVISION for png-1.2.9nb2 update. 2006-04-17 13:45:57 +00:00
jlam
ea5f9f80b6 Strip ${PKGLOCALEDIR} from PLISTs of packages that already obey
PKGLOCALEDIR and which install their locale files directly under
${PREFIX}/${PKGLOCALEDIR} and sort the PLIST file entries.  From now
on, pkgsrc/mk/plist/plist-locale.awk will automatically handle
transforming the PLIST to refer to the correct locale directory.
2006-04-17 07:07:11 +00:00
jlam
9c8b5ede43 Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no
developer is officially maintaining the package.

The rationale for changing this from "tech-pkg" to "pkgsrc-users" is
that it implies that any user can try to maintain the package (by
submitting patches to the mailing list).  Since the folks most likely
to care about the package are the folks that want to use it or are
already using it, this would leverage the energy of users who aren't
developers.
2006-03-04 21:28:51 +00:00
schwarz
54b2ba0a41 uses both C and C++ 2006-02-26 13:44:02 +00:00
schwarz
8a074b5f12 Uses both C and C++ 2006-02-26 13:41:17 +00:00
adam
20cbd632ed Changes 1.6.8:
This release fixes a bug i(crash on startup) that was exposed by gcc 4.
It also adds detection of the recently released OpenBabel 2.0 and the ability
to use Openbabel for exporting to foreign file formats. Subscript encoding in
the SVG export was tweaked again to work around current limitations in the SVG
support of Firefox 1.5 and Konqueror 3.x.
2006-02-13 19:20:53 +00:00
joerg
5911def816 Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
schwarz
14bf75a4c7 Updated biology/mummer to release 3.18. Changes include:
- MUMmer now resides at Sourceforge
- new tools such as delta-filter
- more extensive html documentation and examples
- bug fixes
2006-01-29 19:31:43 +00:00
joerg
898348ab90 One of the first questions in every C class is about the return type
of main. Why does it have to be int? Well, not returning anything can
result in a random exit code. Add make(1) as caller and the normal
behaviour of just stopping on the first error and this package has
a very low success rate for building e.g. on DragonFly.
2006-01-04 21:57:08 +00:00
jlam
dc9594e09d Remove USE_PKGINSTALL from pkgsrc now that mk/install/pkginstall.mk
automatically detects whether we want the pkginstall machinery to be
used by the package Makefile.
2005-12-29 06:21:30 +00:00
joerg
c15b0726f9 mkdirhier used as tool. Install only man page, use the imake variables
to decide where it did go. Bump revision.
2005-12-28 14:03:51 +00:00
joerg
3d0d19d8ea Don't depend on hard-coded /usr/X11R6 and honor CFLAGS. Bump revision. 2005-12-28 13:46:07 +00:00
joerg
172f413acf Don't hard-wire -lpthread, use PTHREAD_*. 2005-12-13 15:24:09 +00:00
joerg
6e4a0dd799 Bump all motif packages for recent openmotif update. The major version
of the shared libXm has changed.
2005-12-12 21:36:54 +00:00
rillig
b71a1d488b Fixed pkglint warnings. The warnings are mostly quoting issues, for
example MAKE_ENV+=FOO=${BAR} is changed to MAKE_ENV+=FOO=${BAR:Q}. Some
other changes are outlined in

    http://mail-index.netbsd.org/tech-pkg/2005/12/02/0034.html
2005-12-05 20:49:47 +00:00
kristerw
8dc7dfb61a malloc.h is nonstandard, and not available on all platforms. 2005-11-19 17:23:46 +00:00
minskim
4913f6ecc9 Add azara. 2005-11-05 01:49:34 +00:00
minskim
437c570c5d Import azara from pkgsrc-wip. Packaged by David Price.
Azara is a suite of programs to process and view NMR data.
2005-11-05 01:47:41 +00:00
rillig
6148b75533 Fixed wrong use of WRKSRC. 2005-11-03 19:52:44 +00:00
rillig
ca0cfb75ab Profit has changed to versioned distfiles almost a year ago, so there's
no need to keep DIST_SUBDIR. Also fixed the misuse of WRKSRC to define
BUILD_DIRS.
2005-11-03 19:45:20 +00:00
rillig
cc5b7b4796 Fixed wrong usage of WRKSRC. 2005-11-03 19:36:39 +00:00
tv
36d7249f84 MITSHM is not available on Interix, so don't request it. 2005-10-31 17:53:26 +00:00
rillig
d4a970894b Replaced ${PKGNAME} with ${PKGNAME_NOREV} in WRKSRC. Removed empty
trailing line from DESCR. Removed empty line from PLIST.
2005-10-24 20:39:55 +00:00
perry
9b21c0e35c add pymol 2005-10-07 21:37:15 +00:00
perry
f89fbe05cf add pymol 0.98, a molecular visualization system 2005-10-07 19:41:07 +00:00
wiz
9f9a149876 Install man page with INSTALL_MAN. 2005-10-07 15:17:56 +00:00
perry
3f533dfbab update RasMol to 2.7.3
Extensive changelist is at:
     http://www.bernstein-plus-sons.com/software/rasmol/
2005-10-07 15:13:21 +00:00
adam
72024522c7 Changes 1.6.7:
- Fixed several serious bugs related to label rendering and printing
  that occured when chemtool was built with GTK 2 instead of GTK 1.2
  (see ChangeLog for details)
- SVG export now adds a namespace header as required by current builds
  of the firefox browser
- SVG export now uses color values instead of color names for better
  SVGT compatibility
- The separation between the lines of multiple bonds is configurable
- The keys of the numeric keypad now create two dots instead of a line
   for free electron pairs when the Shift key is pressed
- Two new bond types for drawing filled and unfilled p orbital lobes
- chemtool now checks for fig2sxd (sourceforge.net) and offers to export
  to OpenOffice Draw format when it is present.
- rpm packages did not install the dutch locale file.

Chnges 1.6.6:
- Fixed bug in molfile preview that caused an immediate crash in 1.6.5
- Made drawing of wiggly bonds work again
2005-08-26 11:53:32 +00:00
jlam
7fbb8d9527 Bump the PKGREVISIONs of all (638) packages that hardcode the locations
of Perl files to deal with the perl-5.8.7 update that moved all
pkgsrc-installed Perl files into the "vendor" directories.
2005-08-06 06:19:03 +00:00
jlam
83147ffa68 Remove some unnecessarily strong dependencies on perl that resulted
from including perl5/buildlink3.mk.  These packages just need the Perl
interpreter, and can just add "perl" to USE_TOOLS instead.
2005-07-16 19:10:37 +00:00
jlam
bf9129c41e Drop distinction between PKGSRC_USE_TOOLS and USE_TOOLS by making
PKGSRC_USE_TOOLS go away.  There is now only a single USE_TOOLS variable
that specifies all of the tools we need to build/run the package.
2005-07-15 18:27:48 +00:00