Commit graph

3630 commits

Author SHA1 Message Date
wen
2afc7db360 Update to 1.706
Upstream changes:
1.706     2015-03-22 12:27:08-04:00 America/New_York
        - do not allow offsets with inverted/broken offset values

1.705     2014-11-16 13:59:01-05:00 America/New_York
        - correct reversed-order of parameters in documentation for
          Test::Tolerant

1.704     2014-10-30 23:11:41-04:00 America/New_York
        - do not rely on feature.pm -- that was an accident

1.703     2014-02-01 19:31:40-05:00 America/New_York
        - overload tolerances for ~~ operator (thanks, Smylers!)

1.702     2013-10-07 10:22:17 America/New_York
          update bugtracker

          avoid circular loading problems (with a nasty hack)

          fix spelling error; thanks, Alexandre Mestiashvili!
2015-07-12 03:26:17 +00:00
joerg
11d2712a27 Remove USE_X11BASE and X11PREFIX. 2015-07-04 16:18:28 +00:00
joerg
6316eed6ef Fix texinfo version check. 2015-07-03 12:45:03 +00:00
jaapb
487d6ab2d3 Recursive revbump associated with update of lang/ocaml to 4.02.2. 2015-06-30 11:52:55 +00:00
ryoon
f1ea8f6c0d Update to 3.1.3
Changelog:
Changes from version 3.1.2 to version 3.1.3:
- Better support for Automake 1.13+ (now used to generate the tarball).
- Improved MPFR manual.
- Bug fixes (see <http://www.mpfr.org/mpfr-3.1.2/#fixed> and ChangeLog file).
2015-06-30 10:25:01 +00:00
wen
f5384c7e40 Update to 1.3.4
Upstream changes:
2014-10-16, version 1.3.4
=========================

Implementation changes
----------------------

* Fix input of huge floats.

Other changes
-------------

* Support the AArch64 and the Mips64 ABIs.


2013-07-21, version 1.3.3
=========================

Implementation changes
----------------------

* Fix integer input of leading zeros in power-of-two base.

* Fix several floating-poing conversion bugs involving huge numbers.

* Fix bug that would set input stream fail state when reading a number at EOF.

Other changes
-------------

* Support the x32 ABI.
2015-06-30 07:56:44 +00:00
wen
ba35b29dee Update to 3.2.1
Upstream changes:
CHANGES IN R 3.2.1
NEW FEATURES

    utf8ToInt() now checks that its input is valid UTF-8 and returns NA if it is not.

    install.packages() now allows type = "both" with repos = NULL if it can infer the type of file.

    nchar(x, *) and nzchar(x) gain a new argument keepNA which governs how the result for NAs in x is determined. For the R 3.2.x series, the default remains FALSE which is fully back compatible. From R 3.3.0, the default will change to keepNA = NA and you are advised to consider this for code portability.

    news() more flexibly extracts dates from package ‘NEWS.Rd’ files.

    lengths(x) now also works (trivially) for atomic x and hence can be used more generally as an efficient replacement of sapply(x, length) and similar.

    The included version of PCRE has been updated to 8.37, a bug-fix release.

    diag() no longer duplicates a matrix when extracting its diagonal.

    as.character.srcref() gains an argument to allow characters corresponding to a range of source references to be extracted.

BUG FIXES

    acf() and ccf() now guarantee values strictly in [-1,1] (instead of sometimes very slightly outside). PR#15832.

    as.integer("111111111111") now gives NA (with a warning) as it does for the corresponding numeric or negative number coercions. Further, as.integer(M + 0.1) now gives M (instead of NA) when M is the maximal representable integer.

    On some platforms nchar(x, "c") and nchar(x, "w") would return values (possibly NA) for inputs which were declared to be UTF-8 but were not, or for invalid strings without a marked encoding in a multi-byte locale, rather than give an error. Additional checks have been added to mitigate this.

    apply(a, M, function(u) c(X = ., Y = .)) again has dimnames containing "X" and "Y" (as in R < 3.2.0).

    (Windows only) In some cases, the --clean option to R CMD INSTALL could fail. (PR#16178)

    (Windows only) choose.files() would occasionally include characters from the result of an earlier call in the result of a later one. (PR#16270)

    A change in RSiteSearch() in R 3.2.0 caused it to submit invalid URLs. (PR#16329)

    Rscript and command line R silently ignored incomplete statements at the end of a script; now they are reported as parse errors. (PR#16350)

    Parse data for very long strings was not stored. (PR#16354)

    plotNode(), the workhorse of the plot method for "dendrogram"s is no longer recursive, thanks to Suharto Anggono, and hence also works for deeply nested dendrograms. (PR#15215)

    The parser could overflow internally when given numbers in scientific format with extremely large exponents. (PR#16358)

    If the CRAN mirror was not set, install.packages(type = "both") and related functions could repeatedly query the user for it. (Part of PR#16362)

    The low-level functions .rowSums() etc. did not check the length of their argument, so could segfault. (PR#16367)

    The quietly argument of library() is now correctly propagated from .getRequiredPackages2().

    Under some circumstances using the internal PCRE when building R fron source would cause external libs such as -llzma to be omitted from the main link.

    The .Primitive default methods of the logic operators, i.e., !, & and |, now give correct error messages when appropriate, e.g., for `&`(TRUE) or `!`(). (PR#16385)

    cummax(x) now correctly propagates NAs also when x is of type integer and begins with an NA.

    summaryRprof() could fail when the profile contained only two records. (PR#16395)

    HTML vignettes opened using vignette() did not support links into the rest of the HTML help system. (Links worked properly when the vignette was opened using browseVignettes() or from within the help system.)

    arima(*, xreg = .) (for d >= 1) computes estimated variances based on a the number of effective observations as in R version 3.0.1 and earlier. (PR#16278)

    slotNames(.) is now correct for "signature" objects (mostly used internally in methods).

    On some systems, the first string comparison after a locale change would result in NA.
2015-06-30 02:38:52 +00:00
markd
19cd57e227 Fix symbol visibility. 2015-06-29 21:35:04 +00:00
joerg
7d2e800fdc Needs pdftex. 2015-06-27 22:38:07 +00:00
jperkin
e20a9326dd Update the fixwrap substitution to work correctly after the recent
libtool changes.  Fixes CHECK_WRKREF builds.
2015-06-22 13:21:59 +00:00
joerg
86de81c83c tex-latex-fonts is in fonts, not in print. 2015-06-15 21:18:03 +00:00
prlw1
db51bbd11e Update gnome-calculator to 3.16.2
Overview of changes in gnome-calculator 3.16.2
    * Fix : Search provider crash introduced by 3.16.1, oops (Michael Catanzaro)

Overview of changes in gnome-calculator 3.16.1
    * Update : Translations (Translation team)
    * Fix : Search provider should discard child stdout/stderr (Michael Catanzaro)
    * Fix : Syntax error in desktop file keywords Bosnian translation (Kalev Lember)

Overview of changes in gnome-calculator 3.16.0
    * Update : Translations (Translation team)

Overview of changes in gnome-calculator 3.15.91
    * New : Remove red color from clear button (Allan Day)
    * Update : Powers page in documentation (Sebastian Rasmussen, Ekaterina Gerasimova)
    * Update : Translations (Translation team)

Overview of changes in gnome-calculator 3.15.4
    * New : Keyboard mode (Elita Lobo)
    * New : MPFR back-end (Daniel Renninghoff)
    * New : Digital Storage conversion (PioneerAxon)
    * Update : Switch to GPLv3+ license (Michael Catanzaro)
    * Update : Case-insensitive conversion units (PioneerAxon)
    * Update : Don't copy thousand separators to clipboard (PioneerAxon)
    * Update : Translations (Translation team)
    * Fix : Use HTTPS for downloading exchange rates (Michael Catanzaro)
    * Fix : Repeated entries in history view (Elita Lobo)
    * Fix : Padding in UI buttons (Trinh Anh Ngoc)
    * Fix : Style history view boarder (Trinh Anh Ngoc)
    * Fix : Sort currencies based on locale (Lubomír SedláÅ<99>)
    * Fix : Deprecated use-stock property (David King)
    * Fix : Download missing exchange rates on first launch (PioneerAxon)
    * Fix : Missing buildtime dependency (Emmanuele Bassi)
    * Fix : gtksourceview binding change (Michael Catanzaro)

Overview of changes in gnome-calculator 3.15.1
    * New : Colored buttons (Elita Lobo)
    * New : History view (Elita Lobo)
    * Update : Update to latest GtkSourceView API (Yosef Or Boczko, Evan Nemerson)
    * Update : Support upcoming Vala 0.27 (Rico Tzschichholz)
    * Update : Increase search provider timeout (Michael Catanzaro)
    * Update : Translations (Translation team)
    * Update : Miscellaneous code improvements (Arnaud Bonatti, Michael Catanzaro)
    * Fix : Misordered buttons in programming mode (Abhinav)
    * Fix : Search provider should not match plain numbers (Marcus Lundblad)
    * Fix : Spurious warnings from search provider (Michael Catanzaro)
    * Fix : Crash after thousands separator is inserted (Michael Catanzaro)
2015-06-15 01:14:23 +00:00
markd
9693e9e954 Update tex-apnum{,-doc} to 1.2 from texlive 2015
.5+.5=.1 bug fixed
2015-06-14 11:31:46 +00:00
wiz
0982effce2 Recursive PKGREVISION bump for all packages mentioning 'perl',
having a PKGNAME of p5-*, or depending such a package,
for perl-5.22.0.
2015-06-12 10:48:20 +00:00
joerg
f0d8e66f5e Since the code expects boost::array to win, use that explicitly. 2015-06-10 15:00:31 +00:00
szptvlfn
51bc945220 Bump PKGREVISION for hs-hashable-1.2.3.2 2015-06-08 20:56:14 +00:00
wiz
dc034d7053 Update to 1.8.2; changes not found. 2015-06-07 08:41:04 +00:00
szptvlfn
b1f3667397 Bump PKGREVISION for hs-text-1.2.1.1 2015-06-04 20:08:59 +00:00
wen
d043b22374 Update to 0.15.0
No upstream changelog found.
2015-05-31 14:00:12 +00:00
wen
b3368cd662 Update to 1.0
Upstream changes:
Version 1.0

2015-02-10	Convert rngs to real function in accordance with pan
		Cast rangen explicitly as real
		Revise DESCRIPTION and remove .Rinstignore
2015-05-31 13:01:35 +00:00
wen
1a359849fe Update to 1.2.2
No upstream changelog found.
2015-05-31 12:57:10 +00:00
wen
3c13e0927c Update to 2.3.9
No upstream changelog found.
2015-05-31 12:04:11 +00:00
wen
82411521b7 Update to 1.0.2
Upstream changes:
Changes in version 1.0-2 (2014-12-16)

  o  start providing C interfaces to the underlying algorithms.
     mvtnorm_C_mvtdst() directly calls Alan's FORTRAN code and
     can be used in other packages via LinkingTo. See
     mvtnorm/inst/C_API_Example for an example very much inspired
     by the example provided in package xts.

  o  provide .C interfaces to the FORTRAN routines and allow switching
     on/off of R' RNG.

Changes in version 1.0-1 (2014-11-11)

  o  replace internal MVCHNV FORTRAN FUNCTION with
     R's sqrt(qchisq(p, n, FALSE, FALSE). This fixes a
     problem where NaN was returned as reported by
     David Charles Airey <airey_david_charles_at_lilly.com>

Changes in version 1.0-0 (2014-07-08)

  o  After 14 years, we now feel safe enough to publish mvtnorm 1.0-0.
     Many packages depend, import, or suggest mvtnorm, so this version
     change also indicates that the package is now stable and, to a very
     large extent, the API is frozen. We will of course continue to fix
     bugs or other problems but new features are unlikely to go into this
     package.

  o  use Authors@R in DESCRIPTION

  o  switch to standard NEWS format
2015-05-31 11:57:03 +00:00
wen
0baffdce1b Update to 1.8.2
No Upstream changelog found.
2015-05-31 03:54:07 +00:00
wen
2537fd42d0 Update to 4.6.10
Upstream changes:
Changes in 4.6-10:

* Fixed bugs introduced in 4.6-8 and 4.6-9. Levels for ordered factors
  in predictors are no longer checked for consistency between training
  and test data in predict.randomForest().  In 4.6-9 the response is mean
  centered before running the algorithm (for regression), but the mean was
  not added back in the $y component of the return object from
  randomForest().

Changes in 4.6-9:

* Categorical predictors are allowed to have up to 53 categories now.

Changes in 4.6-8:

* There was a bug in the handling of ordered factors in randomForest.formula().
  (Reported by Barry Rawlingson.)

* Changed randomForest.formula() and predict.randomForest() so that
  predict() without newdata when na.action=na.exclude pads the output
  with NAs to match the rows in the original data (suggested by Barry
  Rawlingson.).

* There was a long standing bug in randomForest(..., proximity=TRUE, oob.prox=FALSE)
  in regression mode. (Thanks to Stefano Romano for the report.)
2015-05-31 02:38:49 +00:00
wen
ea974721e7 Update to 1.1.4
Update DEPENDS

Upstream changes:
commit 3083307fc8ebf938673028cf7ffc3ccff6a4cac6
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Apr 24 13:56:40 2015 +0200

    upgrade to match sp 1.1-0

commit 5e7950336984a567c0f07abb019930dbaf068abb
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Mar 17 14:21:20 2015 +0100

    docs for expand.range

commit 58d8db3d8863eee96aeea1cf458fbee2e42b32db
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Mar 17 14:18:44 2015 +0100

    range of at was too small; report by Roland Harhoff

commit af552c7e902b69979f309bcf1f795bc7cf782f11
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Mar 17 13:56:53 2015 +0100

    add drop=FALSE to data.frame selector

commit 8ac495755ea13ef90b9e378ec26b963ea316174b
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Mar 13 16:20:47 2015 +0100

    adding +ellps= to CRS arguments, for PROJ 4.9.1

commit 393bb24344b7b3648086ecadf5bf287bdea4fcde
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Mar 5 00:12:50 2015 +0100

    replace unstack with reshape; clean check

commit 45bf1588eef7e2ddbf07f843333d72f0a99d0e4f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Mar 4 20:27:51 2015 +0100

    stplot mode = "xt" for factor: plots as number but no longer crashes

commit b7e51d1720dace123a73669ee04b77255a0b9c09
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Mar 4 19:07:27 2015 +0100

    stplot factor variables when mode = "xy"

commit 24671c67b17293749937d7c955a80ce8e12ac619
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Feb 11 10:51:18 2015 +0100

    make stsdf[1,1] do sth more sensible

commit e7d26c403722f6dfe08f27bbbe82644e2f48976e
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Jan 28 12:13:49 2015 +0100

    improve error message

commit f37ad515f35e21f9351c290437f2948f34b5f894
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Jan 28 10:25:09 2015 +0100

    enable check on duplicate attributes for STSDF

commit 995dd6d742143bf9fcc4d43c19c358f9a4bc626c
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Jan 27 23:34:52 2015 +0100

    adopt new behaviour for STFDF too

commit 08fcfb9f1555e283c82107256c055a5bead0b265
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Jan 27 23:18:42 2015 +0100

    add timeIndex to xts output on single pt subset; report from Jon Skoien;

commit 68d9420d6a9bad79f3b84c656cbfc9f670fe5a28
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sat Jan 24 10:19:17 2015 +0100

    remove rgeos dependency in sto.Rnw, add DE to air.rda

commit 097d3a0fbc63f2ef7773825c07d35eafa3ab3cba
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Jan 21 23:20:34 2015 +0100

    make rgeos requirement conditional

commit cddc6c9ac45dfc7664c7e5b3adbcc65b0f499961
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Jan 21 09:08:18 2015 +0100

    bump version

commit 218a99f5b7b475353f8b37246c945c47f881f6aa
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Mon Jan 19 14:55:57 2015 +0100

    correct timeIndex order for as.data.frame.STS, reported by Jon Skoien

commit 6502ebfd51b6704669c46d26c8dd2b7304c630ef
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sat Jan 17 23:05:15 2015 +0100

    conditional require(rgeos) in example

commit 3f4f8a5c3e6048393ad14fd4444ec03773207dc9
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Jan 15 13:05:22 2015 +0100

    more spTransform

commit a29c98f3c80a784967bc319b5c63a9a725b631cd
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Jan 15 13:03:49 2015 +0100

    title case; address rgdal requirement for spTransform

commit e6073767b1e303dcb20c99cfe635d762bdd36eda
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Jan 15 11:51:11 2015 +0100

    update test output

commit 5b36a6916bc8af4cd696bb7742b0e0f03abe5b25
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Jan 14 17:33:25 2015 +0100

    typo...

commit f74c045284b795bc0e4ad1e167608dfa74a21674
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Jan 14 16:59:45 2015 +0100

    update test output

commit 0604dd381b7e2e10f97bbc3d5b26c8119c744a8f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Jan 14 16:41:54 2015 +0100

    prevent @sp attributes getting dropped (lost)

commit a144894fbb8590a701cec4f99ae1f6f09d896916
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Dec 14 13:18:17 2014 +0100

    correct aggregate with args STIDF, STF; add time chk

commit 4c8cd4f1d6220dc43634e4333e18393a7d8d87e9
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sat Nov 22 12:26:03 2014 +0100

    correct bug in stConstruct() when STIDF has non-chronological records

commit 1969b0c7ba6197d96d4541a15a71a84a19291803
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Nov 20 11:26:02 2014 +0100

    vignette pdf

commit 850c3068348815205937350d9dad048ec3e18cfd
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Nov 20 11:22:36 2014 +0100

    update date

commit 2076a4e3b24c5f2aa8e029eca1a28f9d05f39d52
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Nov 20 11:20:35 2014 +0100

    aggregate() for STI and STF with polygons did not work

commit d903c16d831c43ab777a552b7c31687e5046396f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Oct 30 10:55:32 2014 +0100

    move rgeos to Suggests; improve wind plots in vignette

commit da80be7b754e3b613107845166687b02deeb96dc
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Mon Oct 27 19:26:35 2014 +0100

    update the time plots

commit c1f9a7480241deeb177e345332e4045236e9c02e
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Mon Oct 27 19:17:24 2014 +0100

    change argument to returnEOFs

commit 1783943b6aa395ee0296bed53e88126b51909fd3
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Mon Oct 27 19:02:58 2014 +0100

    add function eof, deprecate EOF

commit 480f74eb8a74adb4a2508f17d470434c2deabf42
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Oct 16 11:00:32 2014 +0200

    added ... to apply() calls

commit c98b5c3ae85414e1eaf53ea0bf72373d371d0dca
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Oct 16 09:40:00 2014 +0200

    doc omission, found by Roland Harhoff

commit 9c82ea3f06c105323282e486ebae84fc6fcfbaca
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Oct 14 09:25:09 2014 +0200

    name too long: only use first name

commit 0ed91ac92db69dc64cecaa9ecf08efbb2308db45
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Sep 26 21:44:00 2014 +0200

    add parens

commit be2182be7cfafadd2d5ebde3256c7eea902c5e2f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Sep 23 21:59:55 2014 +0200

    add call to match.fun(), add STT method to stplot

commit faab956a4f570502961e2f570b5452a346f540ba
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Sep 11 23:29:30 2014 +0200

    add stplot method for STT

commit d83a3607c80317ace36009534c8a2cf0c276c570
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Sep 7 23:34:13 2014 +0200

    add subset methods with ST objects

commit c974e676d494be7cbab83798763115783704dfee
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Sep 7 23:02:44 2014 +0200

    add selection based on match with STF object

commit 8ad1aa01bcbdc4f12e40f8ffe59a77de8157ff77
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Sep 7 23:02:29 2014 +0200

    tidy tabstop

commit 0db898784310fd8b209a9f586f7da47e2fd83c3b
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Sep 7 22:18:52 2014 +0200

    tidy (revert back to tabstop = 4 spaces)

commit 5a476b1fe7580118aeee8af2cbbb5129716c7dac
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Aug 28 12:36:55 2014 +0200

    tzone attribute is now passed on by rbind.STIDF

commit ac8c4d8bfe3e11ca8f14ade6107b917d7c49bdaa
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Aug 24 14:09:14 2014 +0200

    removed ISO codes from air; version bump; tidy stgvis

commit 901738891468730db87e48490c2fa48fad3cd1ef
Merge: 3b0096f 010b921
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Aug 24 14:05:07 2014 +0200

    Merge pull request #20 from mages/patch-2

    Update stgvis.Rmd

commit 010b921d910fbee90bcc144a0349d7cc20bf88d0
Author: Markus Gesmann <markus.gesmann@gmail.com>
Date:   Sun Aug 24 11:00:48 2014 +0100

    Update stgvis.Rmd

    Changed the order in which the data is loaded, as otherwise the mapping of German state names apears to be overwritten by data in air.

commit 3b0096f5fb43ef2af9a1ad61344c8f7032056cee
Merge: 709d30a c44ea66
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Aug 24 10:35:38 2014 +0200

    Merge pull request #19 from mages/patch-1

    Update stgvis.Rmd

commit c44ea6605becfc38a4c54511a53daf4906b81aa7
Author: Markus Gesmann <markus.gesmann@gmail.com>
Date:   Sat Aug 23 21:05:23 2014 +0100

    Update stgvis.Rmd

    I changed the gvisGeoMap statement to gvisGeoChart, as they don't require Flash. Further the Google geo charts understand that Berlin is not part of Brandenburg. Unfortunately, geo charts don't recognise Brandenburg as a province either, hence the codes become handy again.
    The German state name mapping are available via a CRAN package, thus you don't have to download them from Wikipedia. Finally, I added some number formatting to the option setting.

commit 709d30a7751823aafc6fc77dd9196220edf9ecea
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Aug 22 18:57:22 2014 +0200

    hopefully pass check with r-devel; set TZ in subsetting.R

commit 6226cea3e7f0a758763bb7208f211a032da0221f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Aug 22 15:44:37 2014 +0200

    add pointer to ISO_3166_2_DE in air.rda

commit 2bd0272437f47090ac5fa5ae4616e226bea5158e
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Aug 22 15:41:17 2014 +0200

    remove call to wikipedia, add ISO table to air
    add help to stpg to find out whether rgdal misses PostgreSQL driver

commit 7887e760c10ba9a6501ecba1c43410558d12963c
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Aug 22 09:36:48 2014 +0200

    add Irish station means geo chart

commit 11e5da9c96fe9f9dae8d3d93e1b54059af7adbe9
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Aug 22 08:20:57 2014 +0200

    add time line graphs

commit ccee6c0164714a022edf6441f41bdc863798c836
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Aug 21 13:48:55 2014 +0200

    update

commit 55709a1d166aaa23834fab036d3af2e08d066fdb
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Aug 21 11:17:20 2014 +0200

    add googleVis example vignette, typo in stsubs

commit f5838cbc73c77ed072a251a4c3b6c1ec56bd5fc0
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Aug 14 13:45:17 2014 +0200

    add library(sp)

commit 542026cafb10400a6bab77d35e2c583783abb2b8
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Jul 13 17:51:32 2014 +0200

    write.tgrass now writes init.txt

commit 59fc45e87113dd5c609b4654f26402bba18b1e8d
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Apr 9 15:42:22 2014 +0200

    update date

commit 7c0ebc61027fea62bcd59898594ea90fdece14f1
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Apr 1 16:08:37 2014 +0200

    include git commit logs in ChangeLog

commit b7f0e46a24e2a0ee81b022709aca83806674a1b0
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Apr 1 16:04:13 2014 +0200

    depend on R 3.0.0, mv old ChangeLog

commit f8d07fd645fbe53f03d77a12113f186f7acd4e99
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Mar 27 20:30:44 2014 +0100

    tidy indentation and obsolete braces

commit 89827b7864688b94cd8edd87312bc8d0b9004e9e
Merge: 9023c72 2eca08d
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Mar 25 11:35:11 2014 +0100

    Merge pull request #18 from BenGraeler/master

    special case of one row matrices for subsetting

commit 2eca08d29e11a5b01fb489104779bbfb679a23c6
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Tue Mar 25 11:30:10 2014 +0100

    - handeled the special case of one row matrices for subsetting

commit 9023c7262bd12901afa4a6af3941114756726a4a
Merge: d361d74 12b506f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Mar 14 10:41:06 2014 +0100

    Merge pull request #17 from BenGraeler/master

    Unified subsetting of ST* objects

commit 12b506fdc67f98c96fcb837728a39b1dcb6542a0
Merge: b0c4e1e c1bf9cf
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Thu Feb 27 14:13:46 2014 +0100

    - some textual changes

    Merge branch 'master' of https://github.com/BenGraeler/spacetime

    Conflicts:
    	vignettes/stsubs.Rnw
    	vignettes/stsubs.pdf

commit b0c4e1ef23e1c8bb0dc155bb145f45f627159142
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Thu Feb 27 11:52:57 2014 +0100

    - some textual changes in stsubs.Rnw
    - updated test files for subsetting

commit c1bf9cf851f321c674ab5b1f8283d7143287582a
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Thu Feb 27 11:52:57 2014 +0100

    - some textual changes in stsubs.Rnw

commit 9add4fb1220bff4cf5af7c292cc0314619be3bf7
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Wed Feb 26 16:52:22 2014 +0100

    - added vignette on subsetting of spacetime classes
    - some corrections of the subsetting methods along the way of the vignette

commit cdf6e5655c09843db5026301ffde4f1d79c229b8
Merge: 0acbe05 d361d74
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Wed Feb 26 14:13:54 2014 +0100

    Merge remote-tracking branch 'edzerRepo/master'

commit d361d74a72065ee1579d1e16cee65954b126047b
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Feb 26 12:20:28 2014 +0100

    move trajectories code into a separate package

commit 0acbe05cf884775d2fa40eab2846d4af70856414
Merge: 8ef17f0 8283e44
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Tue Feb 25 16:21:23 2014 +0100

    Merge remote-tracking branch 'edzerRepo/master'

commit 8ef17f0a5f733c6eab7027b15db2055a3e6ba85a
Merge: 2fd98e6 47d350d
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Tue Feb 25 16:18:44 2014 +0100

    Merge remote-tracking branch 'edzerRepo/master'

commit 2fd98e68c2c369421179aa8d16fd27accb8b7b55
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Tue Feb 25 16:02:29 2014 +0100

    - STI.. allows now for multiple selection

commit 559e662ce45567fd8e34f8a5a370f777c60df4a9
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Tue Feb 25 15:36:50 2014 +0100

    - STF.. now allows for a matrix index, but returns STS..

commit 9c18d8ba936e0aebc6215a45c789ebcea6d86d6f
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Tue Feb 25 13:50:12 2014 +0100

    - allow for multiple selection in STS..
    - respect ordered subsetting from STS..

commit 8283e44958909bb35d398b6d535bc0eb41180e04
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Feb 18 19:00:08 2014 +0100

    add url of geolife

commit fd1005cd70ad57e9583d4e3bbd2623711133c79a
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Feb 18 18:48:10 2014 +0100

    add geolife reading demo (without geolife data)

commit 259cbef2526120cac4bc8f7a9bf9fc1284e6d3a5
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Mon Feb 17 08:59:04 2014 +0100

    clean, tidy

commit 7cb6f6a7eae301e2154b116d4b3bbeecea4adfd9
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Feb 16 22:59:49 2014 +0100

    avoid rgl plot from vignette

commit 8b680daebbdccdd3cf5ddf6fdac44c8f35c3dfbf
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Feb 16 21:50:06 2014 +0100

    add subsetting output

commit 1a6cebfc8c0115e5efe2f58098fb5aa607ee9fa3
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Feb 16 21:49:40 2014 +0100

    clean up tests

commit a8c7cda2b16218beeb4090c03d6c0c9cdb2ec8bd
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Feb 16 18:48:44 2014 +0100

    add A3 example, add subsetting test

commit 785a40cad6e5f16fd0d8223ebe03d06af21b66f0
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Feb 16 17:29:56 2014 +0100

    clean tracks vignette dependencies

commit 47d350d50204d6c8c0ec1cf1b701846a79ef6603
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Feb 14 17:00:14 2014 +0100

    remove more dependencies

commit 850c3b522b7856d8bf505b80747763a40b82dded
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Feb 14 16:52:36 2014 +0100

    remove dependencies in tracks.Rmd

commit 14d91e6b3e7490cb715a75d1c6322775cbbcfe83
Merge: 09f8268 67d2dfb
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Feb 14 15:44:50 2014 +0100

    Merge branch 'master' of github.com:edzer/spacetime

commit 09f82681a343f44b8bdcc46532077c56271bb569
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Feb 14 15:44:03 2014 +0100

    make tracks vignette work without https, add A3

commit 67d2dfbfac10f521f65cb3265a8f995a19928b9a
Merge: 196edcd a7e997f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Feb 9 10:09:49 2014 +0100

    Merge pull request #16 from BenGraeler/master

    matrix like subsetting for STS and STSDF

commit a7e997fe73ce166f04cd700a9937a36352b9c673
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Thu Feb 6 13:08:56 2014 +0100

    - ignore issues

commit 196edcd5476f2d76fc5642dbe787158d4adfb782
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sat Jan 25 20:30:35 2014 +0100

    optimize coercion from STIDF to STSDF

commit 85cf72d367fe61f2e5c755cc52b337a3eac5d250
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Mon Jan 20 08:25:39 2014 +0100

    update output

commit 8b580e1fa6d3ea4ba050d9b6d73f599b7918de7a
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Jan 19 23:17:30 2014 +0100

    merge pull request; simplify vignette requirements

commit 678e7a71494724849eb7e6e9100354f0abcb08bb
Merge: fe81b0d 9ed6d1c
Author: Bene Luks <benedikt.klus@mail.de>
Date:   Sun Jan 19 22:31:10 2014 +0100

    Merge remote-tracking branch 'upstream/master'

commit fe81b0d58e459e2b350a465d5fdb83a9f4c715d1
Author: Bene Luks <benedikt.klus@mail.de>
Date:   Sun Jan 19 22:30:42 2014 +0100

    Make R CMD build happy on Windows systems.

commit 18280f3ce920c93d9e3cacda2b6e7c1671e9139b
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Wed Jan 8 17:57:49 2014 +0100

    - supports matrix index for sub-setting

commit 1b8588bb24f9437fd724bebc026d80f1f8ce38ea
Merge: 3335b43 9ed6d1c
Author: Benedikt Gräler <ben.graeler@uni-muenster.de>
Date:   Tue Jan 7 23:34:15 2014 -0800

    Merge pull request #2 from edzer/master

    update to edzer/spacetime

commit 9ed6d1c12a462d1021eb9fc9751f731e04f53369
Merge: f2306e2 84da479
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Dec 19 06:01:28 2013 -0800

    Merge pull request #14 from k2sk8s/master

    Added vignette to summarise recent trajectory work

commit 84da479fb6d42e8edf0c58d676777b485561a05c
Author: Bene Luks <benedikt.klus@mail.de>
Date:   Thu Dec 19 10:42:47 2013 +0100

    Added vignette to summarise recent trajectory work.

commit 8ed3561be1e245f06ae47d87d15ad2fb50edde85
Author: Bene Luks <benedikt.klus@mail.de>
Date:   Thu Dec 19 10:41:14 2013 +0100

    Fill missing attribute data with NA instead of dropping the whole column.

commit f2306e215c3d3539f3b4d1dda6413288ba7b735b
Merge: afcf4db 6bd22a6
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Nov 27 14:42:29 2013 +0100

    Merge branch 'master' of github.com:edzer/spacetime

commit afcf4db3c0c52e453028551ffddaec428a3c2c7e
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Nov 27 14:41:30 2013 +0100

    normalize function for cyclic time (hour, weekday)

commit 6bd22a6d57f6703b6b0bf2aa0ddb7b6cb8b12226
Merge: e534d16 dc56ad4
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Nov 26 13:15:36 2013 -0800

    Merge pull request #13 from k2sk8s/master

    Fix: Make aspect ratio work for non lat/lon data

commit dc56ad43a969624154626c415d829f0c777065f8
Merge: fa19c87 e534d16
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Nov 26 22:11:00 2013 +0100

    Merge remote-tracking branch 'upstream/master'

commit fa19c87665450a438700823148de103e4980c9b1
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Nov 26 22:10:24 2013 +0100

    Fix: Make aspect ratio work for non lat/lon data.

commit e534d16280e2314ff15cedf98a86096b6e1a446d
Merge: e05dfa5 29ed800
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Nov 26 08:20:30 2013 -0800

    Merge pull request #12 from k2sk8s/master

    Updated stcube methods to use a sensible aspect ratio and normalized tim...

commit 29ed800be8a45275418d56709c4bf52d08b3c962
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Nov 26 16:19:55 2013 +0100

    Updated stcube methods to use a sensible aspect ratio and normalized time values.

commit e05dfa5ca8452575ca7588dc4c6a0b2c3415ff55
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sat Nov 23 00:25:07 2013 +0100

    add stcube demo, merge Benedikt Klus' stcube work

    moved rgl and OpenStreetMap to Suggests:

commit 326c165fddbfe149d47feb2543615cc1fba4ff0d
Merge: 33dd041 481a575
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sat Nov 23 00:24:26 2013 +0100

    Merge branch 'master' of https://github.com/k2sk8s/spacetime

    Conflicts:
    	DESCRIPTION

commit 33dd0414067c56e6d04c29fc3688c8114a0a9cd9
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Nov 22 23:59:27 2013 +0100

    update Suggests: list

commit 481a5753cccc4f2ed5fa290125b0b69f2d26948e
Author: Bene Luks <b.luks@gmx.de>
Date:   Fri Nov 22 22:04:44 2013 +0100

    Added stcube methods.

commit 3335b43065e878107063160da93082e35b830c95
Merge: 5a1e1c4 8deb983
Author: Benedikt Gräler <ben.graeler@uni-muenster.de>
Date:   Tue Nov 19 01:32:11 2013 -0800

    Merge pull request #1 from edzer/master

    pull from Edzer

commit 8deb98368d305ebe606d2cc0b341ed834d77152f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Mon Nov 18 11:42:51 2013 +0100

    update date

commit 9bb8904ee6619c5c6ae1a500d719b6d5ebe68b75
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Nov 15 15:05:35 2013 +0100

    add example, refresh example test output

commit cca40266a461bcb5a5afd9d3ed3d65142d334f53
Author: Bene Luks <b.luks@gmx.de>
Date:   Fri Nov 15 00:50:10 2013 +0100

    Updated selection methods.

commit 46819c20bd76991689abc65b2038f09366891c21
Merge: f3ef5c6 5d69399
Author: Bene Luks <b.luks@gmx.de>
Date:   Thu Nov 14 22:48:24 2013 +0100

    Merge remote-tracking branch 'upstream/master'

commit f3ef5c693dd8c145823c181501e779059733eaca
Author: Bene Luks <b.luks@gmx.de>
Date:   Thu Nov 14 22:48:05 2013 +0100

    Added [[, [[<-, $ and $<- methods.

commit 5d69399de5e334d9eb64578e14bd8a875bc6cfb9
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Nov 14 13:17:01 2013 +0100

    improve NA time warning

commit 09142041049dccdacc773f76d20b6f28995a4c54
Author: Bene Luks <b.luks@gmx.de>
Date:   Wed Nov 13 16:36:09 2013 +0100

    Simplified code.

commit 92e5eff84aa0663961665d0e6b3a7350d7a06ee5
Author: Bene Luks <b.luks@gmx.de>
Date:   Wed Nov 13 16:26:04 2013 +0100

    generalize() now correctly checks the number of passed arguments. Added documentation. Fixed indentation.

commit 5f31c3f72610a891a4c068ee34d52bc851950199
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sat Nov 9 20:59:47 2013 +0100

    update author list; tidy generalize

commit 5a1e1c46fa5bf458f4bb831cc189c0cf16fdaebb
Author: Benedikt Gräler <ben.graeler@gmail.com>
Date:   Fri Nov 8 09:24:39 2013 +0100

    - STSDF is now plotted with plot.STSDF
    - added coercion to STIDF for the call of stplot with STSDF

commit 7ffeecb36ff614a0e55ba71f501ce139f8e3aefc
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Nov 8 00:18:59 2013 +0100

    simplify generalize, pass ... to FUN, update man

commit 4ca559402f47c87bea7fda340b399df4c2800010
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Nov 6 20:30:08 2013 +0100

    added coerce to Spatial, changed dim names

commit 2157dab93e358fed7ecd43c5909beee4d91016c4
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Nov 5 22:36:37 2013 +0100

    Updated generalize method to consider all segments for aggregation.

commit afe4626fe82797957a10bf8a062b9e6d04d57bc7
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 29 00:26:04 2013 +0100

    Added 'toPoints' argument.

commit 7452d39fc447035b08ebfa40515d5120759298ef
Author: Bene Luks <b.luks@gmx.de>
Date:   Mon Oct 28 23:25:51 2013 +0100

    Updated 'generalize' methods to allow for simplifying the given geometry.

commit 2666d7a3a9237b314cfe334c65da18ba0c8e074c
Author: Bene Luks <b.luks@gmx.de>
Date:   Mon Oct 28 21:35:10 2013 +0100

    Updated signature of 'generalize' methods to improve code maintainability. Added further regression tests.

commit 3dc5dd2c333400067e1987422021777eab92b774
Author: Bene Luks <b.luks@gmx.de>
Date:   Mon Oct 28 20:18:58 2013 +0100

    Updated 'generalize' methods to allow for generalizations over a predefined segment length.

commit 454f7c9df13bb0ba656edf28dff928cc1dfdc7f4
Author: Bene Luks <b.luks@gmx.de>
Date:   Mon Oct 28 19:53:38 2013 +0100

    Updated 'generalize' methods to allow for generalizations over distance.

commit 7e4b418e8974b160fd03236ff2718bfb83e61f96
Author: Bene Luks <b.luks@gmx.de>
Date:   Mon Oct 28 12:54:54 2013 +0100

    Added more 'generalize' methods. Added documentation to make 'R CMD check' run clean. Added regression tests.

commit c28edf0d697eb66487960672445846e529687571
Author: Bene Luks <b.luks@gmx.de>
Date:   Sun Oct 27 21:39:59 2013 +0100

    Added generalize method.

commit 3cc6f9bcbb53f5f70462571c9b6bb5e4d1e33189
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Oct 27 00:14:35 2013 +0200

    add stbox method, set back bbox, correct aggregate

    stbox methods now give the space and time ranges as a
    data.frame; bbox gives the sp-compatible spatial range matrix.

    aggregate with only a Spatial argument can do aggregation
    over all time, or spatial aggregation by time. STF and STF
    do it default per time slice (as in the sto vignette), other
    classes will group all, within a spatial feature, over time.

commit 8e647893f255b5619ab27062abe0f84182f21265
Merge: 01955e2 8676eb6
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 25 17:50:47 2013 +0200

    Merge branch 'master' of github.com:edzer/spacetime

commit 01955e29715196ed3d27466f2d0a8821ce732f1e
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 25 17:48:02 2013 +0200

    aggregation ST by Spatial now aggregates over time

    aggregation used to be by time slice too, making it only
    useful for STFDF objects, and actually doing an aggregate(ST,ST)
    where the second has identical time resolution as the first.

    The old behaviour is retained by
    aggregate(STFDF, Spatial, keepTime = TRUE)
    which is NOT the default, now (so I need to adapt sto.Rnw too).

commit 8676eb60a7a3a375d36ce34ab35a651c14a6ade9
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 25 15:12:12 2013 +0200

    Update contribute.md

commit 4377bf807ea214cb11a57321fd64efcf49134b90
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 25 15:11:15 2013 +0200

    Update contribute.md

commit 83e143f9e5ee00f5f832b67c95636682592eb8e0
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 25 15:10:11 2013 +0200

    Update contribute.md

commit 4ab6932b640a3105f571cef5adf7f7be97301063
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 25 14:47:44 2013 +0200

    Update contribute.md

commit e8d806ce929736b49677b2d07ce5bf3e8570f380
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 25 14:43:19 2013 +0200

    Update contribute.md

commit 5d884324b54a633e6c828a8138dd1bc2ab4b7f91
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 25 14:24:24 2013 +0200

    add contribute file, and .Rbuildignore

commit 3519ba44ed62877d90e73565b7773c444ad66c2f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 25 13:47:39 2013 +0200

    coerce SpatialGrid into SpatialPixels in aggregate

commit bb06885306275037bb1b7af9b9e8296c1e4afb9f
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Oct 23 00:28:57 2013 +0200

    update date and role

commit 6a14c1f2073c674873a08125ad5a4568dec13e16
Merge: b81353c 423c6aa
Author: edzer <edzer.pebesma@uni-muenster.de>
Date:   Tue Oct 22 08:01:02 2013 -0700

    Merge pull request #5 from k2sk8s/master

    Added aggregate and coordinates methods

    Note that when coercing to SpatialPointsDataFrame, aggregate methods will not know how to deal with time (temporal aggregation, or spatio-temporal aggregation).

commit 423c6aa18caf55f2470ab7d31f42a2e2d7c85d42
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 22 14:43:58 2013 +0200

    Added coordinates methods.

commit 2bfa55bccce4aa28ec455c3a37e01e0d265bedaf
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 22 12:38:49 2013 +0200

    Added aggregate methods.

commit b81353ce09536de61d7406ea7be4efa53cb6f327
Merge: 0a09988 bdfa19c
Author: edzer <edzer.pebesma@uni-muenster.de>
Date:   Mon Oct 21 06:08:27 2013 -0700

    Merge pull request #4 from k2sk8s/master

    Added summary methods.

commit bdfa19c34d61cae88af7981dc3d5ebc9c18bb035
Author: Bene Luks <b.luks@gmx.de>
Date:   Mon Oct 21 14:40:53 2013 +0200

    Added summary methods.

commit 0a09988dde5d695eb0b465c3414181aae7d7a6da
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Oct 17 07:56:10 2013 +0200

    fix random seed to obtain constant output from test

commit 2448f15bac06db0f0c08840c5eb4b7b4244e30b4
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Oct 16 23:58:22 2013 +0200

    add tracks test output

    copied from spacetime.Rcheck/tests, this file contains the
    reference test output (and should, after checking, be replaced
    again when the tests are changed or extended)

commit 2f880211cbc00eaec98ea027577b54d247b3a204
Merge: 37905ec cd2011e
Author: edzer <edzer.pebesma@uni-muenster.de>
Date:   Wed Oct 16 14:38:31 2013 -0700

    Merge pull request #3 from k2sk8s/master

    Added first regression tests, among others

commit cd2011e9d78acf6d3e59bfbe79c6f02ec200c068
Merge: dedfce8 37905ec
Author: Bene Luks <b.luks@gmx.de>
Date:   Wed Oct 16 22:14:07 2013 +0200

    Merged upstream. Resolved merge conflicts.

commit dedfce84ccf66b03a8576c8e85223abc0708b9d1
Author: Bene Luks <b.luks@gmx.de>
Date:   Wed Oct 16 21:10:58 2013 +0200

    Added first regression tests. More to come.

commit 3d4deec02ab61e0e7dadf27c9b66767384a0a7d6
Author: Bene Luks <b.luks@gmx.de>
Date:   Wed Oct 16 21:01:16 2013 +0200

    Fixed selection bug. Added comments.

commit 4065f03a809006734214597d306cbe93f4d367d3
Author: Bene Luks <b.luks@gmx.de>
Date:   Wed Oct 16 16:18:19 2013 +0200

    Wrapped comments at 80 characters.

commit 8e1628d4358eb718872021e1af85119bd806418c
Author: Bene Luks <b.luks@gmx.de>
Date:   Wed Oct 16 16:08:57 2013 +0200

    Removed redundant coercion method. Wrapped comments at 80 characters.

commit 37905ecf63c55ec46607b2c9c3ccbd4ce3550a7a
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Oct 15 19:00:07 2013 +0200

    add rbind for STIDF, sp dependency on rev 1478

    created dependency on sp revision 1478 (r-forge)
    that cleans up the CRS checking in validity functions of
    Tracks and TracksCollection. Removed the ::: dependencies.
    added an alias to over.Rd, to make R CMD check clean.

commit a249142559134940ce878e2bf98cb79afbc21d80
Merge: 0b35b47 0ef1509
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Oct 15 16:01:37 2013 +0200

    Merge branch 'master' of https://github.com/k2sk8s/spacetime

commit d7b13507d9e5f98d10d3d32f746c230f1919bd08
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 15 15:43:11 2013 +0200

    Removed redundant coercion method.

commit 4b1c8ec6b87c57e6e10e51fd9fb6a859f69bdd0d
Merge: 0ef1509 0b35b47
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 15 14:18:49 2013 +0200

    Merge remote-tracking branch 'upstream/master'

commit 0ef1509941d09ae2a4d88d47b19ceadac9d8322e
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 15 14:00:15 2013 +0200

    Added coercion methods to allow for converting trajectories to SpatialPointsDataFrame.

commit 2e27ba0b23d19db0ccc837f8e58ed3673fc3f05b
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 15 13:40:25 2013 +0200

    Added coercion methods to allow for converting trajectories to spatio-temporal points.

commit bccfa1d231ac2239d534e28639229d7e3f2cee7a
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 15 12:49:20 2013 +0200

    Added coercion methods to allow for converting trajectories to time series. Code cleanups.

commit 38e5d8c263d809819044eb6ec9fe0ff9ef2996df
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 15 11:09:19 2013 +0200

    Added over method for Track objects. Fixed coercion method.

commit 74112f86fec196f294e7f57a637acbf0cf88592e
Author: Bene Luks <b.luks@gmx.de>
Date:   Tue Oct 15 10:45:42 2013 +0200

    Added rgeos as a required dependency to make any over methods for trajectory classes work flawlessly.

commit 0b35b472cc0d9bb09cdcca31b5119f9bf7ab18ae
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Oct 15 09:46:55 2013 +0200

    update minor version, date, URL, contributor

commit a32e458c4891247a2c711a729f53b662ae843da2
Author: Bene Luks <b.luks@gmx.de>
Date:   Mon Oct 14 16:39:33 2013 +0200

    Fixed selection method to correctly address selections such as Tr[list(integer(0), 2)]. Code cleanups.

commit 5f1a147b355593a1e3eb36231c1e46d852e1579e
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Oct 13 18:56:15 2013 +0200

    clean up for R CMD check

commit c41946be5ec4687700929ce5a94569db4edd212a
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Sun Oct 13 18:27:11 2013 +0200

    added c, stack and unstack methods, and example code

commit ef16d17c182c911f9e8e5be2ac0b2723fe09d840
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 11 23:02:49 2013 +0200

    R CMD check is clean again

commit aa097ed255fb4b238f323cfd2d33cbcf4f8ad6fc
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 11 17:18:22 2013 +0200

    added proj4string and coerce to SpatialLines* methods

commit fbb085878bf68cffcba0dbe7166b70028aae0040
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Oct 10 12:06:38 2013 +0200

    tested list selection; updated over signatures.

commit e2c4b284f17de55dd4ebfd74ab0ea3360458f483
Author: Bene Luks <b.luks@gmx.de>
Date:   Wed Oct 9 20:29:32 2013 +0200

    Added coercion methods. Arbitrary selection of ID/Track combinations are now possible.

commit 3e145a0e9d93e7a70a539a46b439df572a114e30
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Oct 4 14:42:43 2013 +0200

    corrected plot x/ylim values, added default names

commit 1be33fdbed6560773c79f376cdbb37e72fab3620
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Oct 2 16:45:04 2013 +0200

    added Track IDs; corrected direction calculations

commit 7988d6db57a42a0970668e4a9c95ccc4a5aa7d22
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Tue Oct 1 19:57:57 2013 +0200

    added sp.layout to spplot for TracksCollection

commit 109b44134f74dddcd19814b57ac92cb6ea8404c5
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Mon Sep 30 23:35:09 2013 +0200

    added segments class; added simple [ selection methods

commit 4f142a943853cf29792cc3c0c9b8730e3d616b02
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Sep 27 18:00:32 2013 +0200

    added dim methods, improved stplot.

commit 7c490847192267ab1d87c4b1c5358361efc2b8b9
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Fri Sep 27 16:49:23 2013 +0200

    plotting trajectories, both stplot and plot; example in doc.

commit 20a55bb3d49442e1d623cc74906a28617a4b79ad
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Sep 26 23:16:46 2013 +0200

    more stplot work for TracksCollection objects, xx2seg conversions

commit 2b8b7346691799c8ca7fe10d2233719cce1762d1
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Sep 26 17:34:53 2013 +0200

    more on trajectories; some plotting fn

commit 3bbfc938653b676a2c965addc3de1ec769034932
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Thu Sep 26 16:11:07 2013 +0200

    trajectory work

commit b4ebdaeb9b351a5dd974f482a35d06660d782607
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Sep 25 20:58:26 2013 +0200

    work on Tracks

commit 1e1c9260af2f508d5fe15f1732ad84b5b928faaf
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Sep 25 18:03:12 2013 +0200

    removed svn;  added Tracks files

commit bb3fc2124386914751e3bf84ab570948cc9ba889
Author: edzer <edzer.pebesma@uni-muenster.de>
Date:   Wed Sep 25 17:20:51 2013 +0200

    added urls

commit b642fddf8c720b51784d2b6c1d16fc156f634696
Merge: 7d8ee87 95e1e2a
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Sep 25 17:11:43 2013 +0200

    Merge github.com:edzer/spacetime

commit 7d8ee87af202e98a80665798df930188fb187bf1
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Sep 25 16:04:57 2013 +0200

    initial commit

commit eba0f2d720ce7053d97a728fe1b7844a8f25874d
Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Date:   Wed Sep 25 16:03:17 2013 +0200

    first commit

commit 95e1e2aa46c55d7dfead687f93877b1d62d939bb
Author: edzer <edzer.pebesma@uni-muenster.de>
Date:   Wed Sep 25 07:02:03 2013 -0700

    Initial commit
2013-09-20 15:47  ben_graeler

	* spacetime/R/STSDF-methods.R: - fixed minor issue for single
	  points in space and time in coordinates method

2013-09-20 12:34  edzer

	* spacetime/R/STFDF-methods.R, spacetime/R/STIDF-methods.R,
	  spacetime/R/STSDF-methods.R: added [ methods for STF, STS, STI;
	  needs some testing

2013-09-19 09:33  jinlong

	* trajectories/R/aggregate.R, trajectories/R/crop.R,
	  trajectories/data/geolife_sample.RData,
	  trajectories/inst/geolife_reader.R,
	  trajectories/man/geolife_sample.Rd,
	  trajectories/vignettes/demo.Rmd: - Revised crop();
	  - Revised aggregate();
	  - Updated geolife_sample.RData
	  - Added demo.Rmd

2013-09-18 06:53  jinlong

	* trajectories/R/summary.R, trajectories/data/geolife_sample.RData,
	  trajectories/inst/geolife_reader.R,
	  trajectories/man/geolife_sample.Rd,
	  trajectories/tests/crop_and_plot_demo.R,
	  trajectories/tests/crop_demo.Rout.save: - summary() function
	  updated
	  - geolife_reader.R updated with the computation of trajectory
	  stats
	  - geolife_sample dataset updated

2013-09-16 07:50  edzer

	* trajectories/R/crop.R,
	  trajectories/tests/aggregate_demo.Rout.save: take right
	  coordinates

2013-09-16 07:46  edzer

	* trajectories/R/crop.R: right coordinates

2013-09-16 07:40  edzer

	* trajectories/tests/STItoSTTDFdemo2.Rout.save: test output

2013-09-16 06:59  jinlong

	* trajectories/tests/crop_and_plot_demo.R: - updated the data for
	  demo

2013-09-16 05:41  jinlong

	* trajectories/data/geolife_sample.RData,
	  trajectories/inst/geolife_reader.R,
	  trajectories/man/geolife_sample.Rd,
	  trajectories/tests/crop_and_plot_demo.R,
	  trajectories/tests/crop_and_plot_demo.Rout.save,
	  trajectories/tests/geolife_reader.R, trajectories/vignettes,
	  trajectories/vignettes/sttdf.png,
	  trajectories/vignettes/sttdf_cropped_w_pol.png,
	  trajectories/vignettes/sttdf_w_pol.png: - geolife sample dataset
	  added.

2013-09-16 05:07  jinlong

	* trajectories/NAMESPACE, trajectories/R/STItoSTTDF.R,
	  trajectories/R/crop.R, trajectories/notes,
	  trajectories/tests/STItoSTTDFdemo.R,
	  trajectories/tests/STItoSTTDFdemo2.R,
	  trajectories/tests/STItoSTTDFdemo2.Rout.save,
	  trajectories/tests/STTDF_selection.R,
	  trajectories/tests/aggregate_demo.R,
	  trajectories/tests/aggregate_demo.Rout.save,
	  trajectories/tests/crop_and_plot_demo.R,
	  trajectories/tests/crop_and_plot_demo.Rout.save,
	  trajectories/tests/crop_demo.R,
	  trajectories/tests/crop_demo.Rout.save,
	  trajectories/tests/cut.STTDF.SpatialPolygons.R,
	  trajectories/tests/geolife_reader.R,
	  trajectories/tests/over.STTDF.SpatialPolygons.R,
	  trajectories/tests/read.R,
	  trajectories/tests/summary_and_plot_demo.R,
	  trajectories/tests/traj_sample.R,
	  trajectories/tests/traj_stats.R: - output files added
	  - tests files corrected
	  - bug fixed in crop
	  - geolife_reader.R revised
	  - directory cleaned

2013-09-11 10:58  edzer

	* spacetime/DESCRIPTION: version bump

2013-09-10 13:55  edzer

	* spacetime/NAMESPACE, spacetime/R/ST-methods.R,
	  spacetime/R/coerce.R: setMethod geometry
	  export geometry and aggregate
	  corrected coerce STIDF->STTDF

2013-09-09 08:37  edzer

	* spacetime/vignettes/stpg.Rnw: back to 2.14.x compatibility

2013-09-06 07:41  edzer

	* trajectories/NAMESPACE: exportMethod plot

2013-09-06 07:27  edzer

	* trajectories/tests/STItoSTTDFdemo.Rout.save: redid test output

2013-09-06 07:24  edzer

	* trajectories/tests/STItoSTTDFdemo.R: fixed random number
	  generator seed

2013-09-06 07:22  edzer

	* spacetime/DESCRIPTION,
	  trajectories/tests/STItoSTTDFdemo.Rout.save: added test output

2013-09-06 07:17  edzer

	* trajectories/tests/STItoSTTDFdemo.R,
	  trajectories/tests/crop_demo.R: added libraries

2013-09-06 07:12  edzer

	* trajectories/test, trajectories/tests: directory name change

2013-09-06 06:59  edzer

	* trajectories/man/summary.Rd: addressed the NOTE by R CMD check

2013-09-06 06:49  jinlong

	* trajectories/R/aggregate.R,
	  trajectories/test/merge_not_working.R,
	  trajectories/test/sample_not_working.R: - Fix bug in aggregate.R

2013-09-05 09:28  edzer

	* spacetime/DESCRIPTION, spacetime/R/Class-ST.R,
	  spacetime/R/Class-STFDF.R, spacetime/R/Class-STIDF.R,
	  spacetime/R/Class-STSDF.R, spacetime/R/Class-STTDF.R: removed
	  slots = c(...) notation, to keep R 2.14 compatibility.

2013-09-03 09:50  edzer

	* spacetime/DESCRIPTION: version downgrade

2013-09-03 09:44  edzer

	* spacetime/DESCRIPTION, spacetime/man/eof.Rd,
	  spacetime/man/stinteraction.Rd,
	  spacetime/tests/Examples/spacetime-Ex.Rout.save: issues caused by
	  gstat 1.0-17

2013-09-03 07:19  jinlong

	* trajectories/NAMESPACE, trajectories/R/aggregate.R,
	  trajectories/R/crop.R,
	  trajectories/R/cut.STTDF.SpatialPolygons.R,
	  trajectories/man/aggregate.Rd,
	  trajectories/man/cut.STTDF.SpatialPolygons.Rd,
	  trajectories/test/aggregate_demo.R,
	  trajectories/test/crop_demo.R,
	  trajectories/test/summary_and_plot_demo.R: - Add aggregate()
	  function;
	  - Rewrite crop() function;
	  - Delete cut.STTDF.SpatialPolygons() function;
	  - Modify the demo for aggregate(), summary(), plot(), and crop()

2013-09-02 13:06  edzer

	* spacetime/.Rbuildignore, spacetime/DESCRIPTION,
	  spacetime/NAMESPACE, spacetime/R/aggregate.R,
	  spacetime/man/ST-class.Rd, spacetime/man/STFDF-class.Rd,
	  spacetime/man/STSDF-class.Rd, spacetime/man/STTDF-class.Rd,
	  spacetime/man/fires.Rd, spacetime/man/na.Rd,
	  spacetime/man/over.Rd, spacetime/man/unstack.Rd,
	  spacetime/tests/Examples/spacetime-Ex.Rout.save,
	  spacetime/tests/basic.R, spacetime/tests/basic.Rout.save,
	  spacetime/tests/over.R, spacetime/tests/over.Rout.save,
	  spacetime/tests/rw.R, spacetime/tests/stconstruct.R,
	  spacetime/tests/stconstruct.Rout.save,
	  spacetime/tests/traj.Rout.save, spacetime/tests/wind.R,
	  spacetime/tests/wind.Rout.save, spacetime/vignettes/jss816.Rnw,
	  spacetime/vignettes/sto.Rnw: sp is now imported, not loaded;
	  adjusted all examples and demos.

2013-08-30 19:46  edzer

	* spacetime/DESCRIPTION: addressed CRAN NOTE: removed duplicates
	  between Suggests: and Imports:

2013-08-13 06:07  jinlong

	* trajectories/NAMESPACE, trajectories/R/crop.R,
	  trajectories/R/over.STTDF.STTDF.R,
	  trajectories/R/over.STTDF.SpatialPolygons.R,
	  trajectories/R/plot.R, trajectories/R/summary.R,
	  trajectories/man/crop.Rd, trajectories/man/over.STTDF.STTDF.Rd,
	  trajectories/man/over.STTDF.SpatialPolygons.Rd,
	  trajectories/notes, trajectories/test/crop_demo.R,
	  trajectories/test/read.R,
	  trajectories/test/summary_and_plot_demo.R: - crop() added
	  - summary() fixed with invalid data attributes

2013-08-05 07:40  jinlong

	* trajectories/demo/00Index, trajectories/demo/STItoSTTDFdemo.R,
	  trajectories/demo/STItoSTTDFdemo2.R,
	  trajectories/demo/STTDF_selection.R,
	  trajectories/demo/cut.STTDF.SpatialPolygons.R,
	  trajectories/demo/geolife_reader.R,
	  trajectories/demo/over.STTDF.SpatialPolygons.R,
	  trajectories/demo/read.R, trajectories/demo/traj_sample.R,
	  trajectories/demo/traj_stats.R, trajectories/notes,
	  trajectories/test, trajectories/test/STItoSTTDFdemo.R,
	  trajectories/test/STItoSTTDFdemo2.R,
	  trajectories/test/STTDF_selection.R,
	  trajectories/test/cut.STTDF.SpatialPolygons.R,
	  trajectories/test/geolife_reader.R,
	  trajectories/test/over.STTDF.SpatialPolygons.R,
	  trajectories/test/read.R, trajectories/test/traj_sample.R,
	  trajectories/test/traj_stats.R: - Move all files in demo folder
	  into test folder;
	  - Update the note;

2013-08-05 07:11  jinlong

	* trajectories/R/STItoSpatialLines.R, trajectories/R/plot.R,
	  trajectories/R/summary.R, trajectories/man/STItoSpatialLines.Rd,
	  trajectories/man/plot.Rd, trajectories/man/summary.Rd: - Missing
	  files added

2013-08-05 07:11  jinlong

	* trajectories/NAMESPACE,
	  trajectories/R/cut.STTDF.SpatialPolygons.R, trajectories/notes: -
	  Added plot.R, summary.R, STItoSpatialLines.R
	  - Modified cut.STTDF.SpatialPolygons.R and STI to SpatialLines.R

2013-07-23 13:10  edzer

	* trajectories/man/traj_sample.Rd: alias

2013-07-23 12:55  jinlong

	* trajectories/DESCRIPTION, trajectories/NAMESPACE,
	  trajectories/R/STItoSTTDF.R,
	  trajectories/R/STTDFtoSpatialLines.R,
	  trajectories/R/cut.STTDF.SpatialPolygons.R,
	  trajectories/R/over.STTDF.SpatialPolygons.R,
	  trajectories/demo/00Index, trajectories/demo/STItoSTTDFdemo2.R,
	  trajectories/demo/cut.STTDF.SpatialPolygons.R,
	  trajectories/demo/traj_sample.R,
	  trajectories/man/STTDFtoSpatialLines.Rd,
	  trajectories/man/cut.STTDF.SpatialPolygons.Rd,
	  trajectories/man/over.STTDF.SpatialPolygons.Rd: -
	  cut.STTDF.SpatialPolygons.R added
	  - STTDFtoSpatialLines.R added

2013-07-21 16:22  jinlong

	* trajectories/NAMESPACE,
	  trajectories/R/over.STTDF.SpatialPolygons.R, trajectories/data,
	  trajectories/data/traj_sample.RData, trajectories/demo/00Index,
	  trajectories/demo/over.STTDF.SpatialPolygons.R,
	  trajectories/demo/traj_sample.R,
	  trajectories/man/over.STTDF.STTDF.Rd,
	  trajectories/man/over.STTDF.SpatialPolygons.Rd,
	  trajectories/man/traj_sample.Rd, trajectories/notes: - New
	  dataset
	  - over.STTDF.SpatialPolygons

2013-07-16 06:54  jinlong

	* trajectories/DESCRIPTION, trajectories/NAMESPACE,
	  trajectories/R/STItoSTTDF.R, trajectories/R/over.STTDF.STTDF.R,
	  trajectories/demo/STItoSTTDFdemo.R,
	  trajectories/demo/geolife_reader.R, trajectories/inst,
	  trajectories/man/over.STTDF.STTDF.Rd, trajectories/notes: -
	  over.STTDF.STTDF.R added

2013-07-14 07:26  jinlong

	* trajectories/NAMESPACE, trajectories/demo/STTDF_selection.R: -
	  Clean package check with one warning message

2013-07-13 11:54  edzer

	* spacetime/vignettes/stpg.Rnw: set eval=FALSE again; updated the
	  off-cran eval=TRUE document

2013-07-13 09:18  edzer

	* spacetime/vignettes/stpg.Rnw: updated vignette

2013-07-13 07:58  jinlong

	* trajectories/demo/00Index, trajectories/demo/STItoSTTDFdemo.R,
	  trajectories/demo/sttdf_computation.R,
	  trajectories/man/STItoSTTDF.Rd: - Updated the description in
	  demo/00Index
	  - Added comments in STItoSTTDFdemo.R

2013-07-12 09:19  edzer

	* trajectories/DESCRIPTION, trajectories/NAMESPACE,
	  trajectories/demo/00Index, trajectories/man/STItoSTTDF.Rd: tidy
	  to make check clean; import rgdal to support project().

2013-07-12 07:56  jinlong

	* trajectories/DESCRIPTION, trajectories/NAMESPACE,
	  trajectories/R/STItoSTTDF.R, trajectories/man/STItoSTTDF.Rd: -
	  Updated STItoSTTDF.Rd

2013-07-12 07:23  jinlong

	* trajectories/DESCRIPTION, trajectories/NAMESPACE,
	  trajectories/R/STItoSTTDF.R, trajectories/man/STItoSTTDF.Rd: -
	  Fixed multiple bugs that preventing building the package

2013-07-11 06:23  jinlong

	* trajectories/NAMESPACE, trajectories/demo/STTDF_selection.R: -
	  NAMESPACE updated
	  - STTDF_selection.R temporarily disabled

2013-07-11 06:00  jinlong

	* trajectories/NAMESPACE, trajectories/R/STItoSTTDF.R,
	  trajectories/demo/STItoSTTDF.R,
	  trajectories/demo/STItoSTTDFdemo.R,
	  trajectories/demo/geolife_reader.R,
	  trajectories/man/STItoSTTDF.Rd, trajectories/notes: - notes
	  updates
	  - STItoSTTDF.R moved to R/
	  - geolife.R updated
	  - NAMESPACE updated

2013-07-09 15:27  edzer

	* spacetime/DESCRIPTION, spacetime/R/Class-ST.R,
	  spacetime/R/Class-STFDF.R, spacetime/R/Class-STIDF.R,
	  spacetime/R/Class-STSDF.R, spacetime/R/Class-STTDF.R,
	  spacetime/R/Class-xts.R, spacetime/R/coerce.R: changed
	  "representation" into "contains" and "slots", as for R 3.0.0
	  recommendations;
	  changed import order of xts and zoo.;
	  changed setClass to setOldClass for S3 class registration.

2013-07-09 08:01  jinlong

	* trajectories/demo/STItoSTTDF.R,
	  trajectories/demo/geolife_reader.R,
	  trajectories/man/STItoSTTDF.Rd, trajectories/notes: - notes
	  updated
	  - multiple updated for the R scripts in demo directory

2013-07-09 06:44  jinlong

	* trajectories/demo/STItoSTTDF.R, trajectories/man/STItoSTTDF.Rd,
	  trajectories/notes: - Updated on notes
	  - Added STItoSTTDF.Rd

2013-07-08 07:41  jinlong

	* trajectories/demo/STItoSTTDF.R,
	  trajectories/demo/geolife_reader.R,
	  trajectories/demo/sttdf_computation.R, trajectories/notes: -
	  STItoSTTDF.R added
	  - geolife_reader.R added
	  - STTDF_computation.R modified
	  - notes updated
2015-05-31 02:32:48 +00:00
ryoon
95d3afa399 Bump PKGREVISION.
* Fix build under NetBSD 6.1.5.
  Newer texinfo is required. From wen@.
2015-05-30 12:31:01 +00:00
wen
f7cd6d5740 Update to 2.01.37
Upstream changes:
2015-03-18 11:28  rsbivand

	* DESCRIPTION,
	  src/ptinpoly.c: tidy

2015-02-03 19:28  rsbivand

	* NAMESPACE:
	  tidy

2014-10-03 12:52  rsbivand

	* DESCRIPTION,
	  R/inout.S: inout

2014-09-30 15:55  rsbivand

	* ChangeLog,
	  inst/ChangeLog: tidy

2014-09-30 15:51  rsbivand

	* DESCRIPTION,
	  R/inout.S, src/inpip.f: logical to integer inpip.f

2013-08-30 14:45  rsbivand

	* ChangeLog,
	  inst/ChangeLog: tidy

2013-08-30 14:44  rsbivand

	* DESCRIPTION:
	  tidy

2013-08-29 14:26  rsbivand

	* .Rbuildignore:
	  tidy
2015-05-30 11:09:12 +00:00
wen
9de901e02d Update to 1.1.0
Upstream changes:
2015-04-24 08:59  edzer

	* ChangeLog, R/aggregate.R: aggregate: add drop_lower_td = TRUE to
	  gIntersection call

2015-04-24 08:57  edzer

	* inst/ChangeLog: tidy

2015-04-24 07:42  rsbivand

	* R/CRS-methods.R: change to nzchar

2015-04-24 07:33  rsbivand

	* R/CRS-methods.R, R/Class-Spatial.R, R/SpatialLines-methods.R,
	  R/SpatialPolygons-methods.R, R/projected.R: change to nzchar

2015-04-23 17:56  rsbivand

	* R/CRS-methods.R: R-devel needs !is.na(projargs) in CRS for lazy
	  loading

2015-04-23 14:36  edzer

	* man/as.SpatialPolygons.GridTopology.Rd: removed non-working
	  example lines

2015-04-23 10:47  rsbivand

	* R/SpatialPolygonsDataFrame-methods.R, inst/include/sp_xports.c,
	  src/sp_xports.c: SpatialPolygonsDataFrame error message

2015-04-21 06:29  edzer

	* man/spplot.Rd: modified example

2015-04-20 19:16  edzer

	* R/spplot.R: more spplot fixes

2015-04-20 18:58  edzer

	* R/spplot.R, man/spplot.Rd: more patches from Josh O'Brien

2015-04-19 17:10  edzer

	* DESCRIPTION: add Josh O'Brien to the ctb list

2015-04-19 17:04  edzer

	* R/spplot.R, man/spplot.Rd: corrections to sp.layout processing,
	  with help from Josh O'Brien

2015-04-16 19:16  edzer

	* .Rbuildignore, ChangeLog, build-prep.sh, build-release.sh: add
	  build-release script, so that not every build triggers an svn
	  `tidy' commit

2015-04-16 19:15  edzer

	* inst/ChangeLog: tidy

2015-04-16 19:14  edzer

	* inst/ChangeLog: tidy

2015-04-16 17:08  rsbivand

	* inst/ChangeLog: tidy

2015-04-16 16:39  edzer

	* R/aggregate.R: add comments to somewhat dense code

2015-04-16 14:38  edzer

	* R/aggregate.R: break when IDs contain space characters

2015-04-16 12:44  rsbivand

	* inst/ChangeLog: tidy

2015-04-16 12:44  rsbivand

	* inst/ChangeLog: tidy

2015-04-16 10:01  edzer

	* .Rbuildignore, R/SpatialPolygonsDataFrame-methods.R,
	  R/aggregate.R, man/aggregate.Rd: correct SpatialPolygonsDataFrame
	  subsetting with character argument
	  add area-weighted aggregation, as an option to sp::aggregate

2015-04-14 21:36  edzer

	* ChangeLog, R/Spatial-methods.R, build-prep.sh: warn when
	  data.frame is assigned to attribute vector

2015-04-14 13:58  edzer

	* inst/ChangeLog: tidy

2015-04-13 17:38  edzer

	* inst/ChangeLog: tidy

2015-04-13 17:35  edzer

	* ChangeLog, inst/ChangeLog, inst/include/sp.h, src/sp.h,
	  src/sp.h.in: tidy

2015-04-13 17:34  edzer

	* ChangeLog, inst/ChangeLog, inst/include/sp_xports.c,
	  src/sp_xports.c: tidy

2015-04-13 17:23  edzer

	* ChangeLog, inst/ChangeLog: tidy

2015-04-13 17:19  edzer

	* ChangeLog, inst/ChangeLog: tidy

2015-04-13 15:29  rsbivand

	* ChangeLog, inst/ChangeLog: tidy

2015-04-13 15:28  rsbivand

	* .Rbuildignore, ChangeLog, build-prep.sh, svn2cl.xsl: move to
	  distributed svn2cl

2015-04-13 10:57  edzer

	* inst/include/sp_xports.c, src/sp_xports.c: tidy

2015-04-13 08:00  rsbivand

	* src/sp.h.in: add sp/src/sp.h.in

2015-04-13 07:49  edzer

	* src/pip.c, src/pip2.c, src/sp_xports.c: add const qualifiers,
	  tidy sp_xports.c

2015-04-09 19:17  rsbivand

	* ChangeLog, inst/ChangeLog: tidy

2015-04-09 19:16  rsbivand

	* .Rbuildignore, ChangeLog, DESCRIPTION, build-prep.sh,
	  inst/ChangeLog: tidy

2015-04-09 19:10  rsbivand

	* .Rbuildignore: devel check issues (urls)

2015-04-09 19:07  rsbivand

	* build-prep.sh, inst/include/sp.h, inst/include/sp_xports.c:
	  adding build-prep.sh

2015-04-09 17:09  rsbivand

	* DESCRIPTION, man/meuse.Rd, man/panel.Rd, man/spDistsN1.Rd,
	  man/spplot.Rd: devel check issues (urls)

2015-04-09 13:17  rsbivand

	* ChangeLog, inst/ChangeLog: tidy

2015-04-09 13:16  rsbivand

	* man/Spatial-class.Rd, man/SpatialLines-class.Rd,
	  man/SpatialPoints-class.Rd, man/SpatialPolygons-class.Rd:
	  document plot methods

2015-04-09 11:14  rsbivand

	* ChangeLog, inst/ChangeLog: tidy

2015-04-09 11:11  rsbivand

	* DESCRIPTION, inst/include/sp.h, inst/include/sp_xports.c,
	  man/spplot.Rd, src/init.c, src/pip.c, src/pip2.c, src/sp.h,
	  src/sp_xports.c, tests/fail1.R, tests/fail1.Rout.save: duplicate

2015-04-08 19:19  rsbivand

	* man/CRS-class.Rd, man/degaxis.Rd, man/is.projected.Rd,
	  man/nowrapSpatialLines.Rd, man/recenter-methods.Rd,
	  src/sp_xports.c: first cut duplicate and +ellps in man/*

2015-03-30 15:30  edzer

	* man/spplot.Rd: add spplot example with floating legend

2015-03-30 07:50  edzer

	* man/sp-deprecated.Rd: tidy; forgot overlay method definition

2015-03-30 07:39  edzer

	* DESCRIPTION, R/Spatial-methods.R, R/overlay.R,
	  man/sp-deprecated.Rd: remove overlay method instances, keep
	  definition for raster

2015-03-28 11:53  edzer

	* man/over.Rd, man/spplot.Rd: tidy examples

2015-03-27 23:18  edzer

	* R/spplot.R, man/spplot.Rd: make `first' argument work again; add
	  examples of simpler sp.layout.

2015-03-22 19:54  edzer

	* R/spplot.R: argument `first' was not passed; spotted by Josh
	  O'Brien

2015-03-20 08:13  edzer

	* R/spplot.R: bug on plot order, reported by Josh O'Brien

2015-03-17 18:40  edzer

	* R/bubble.R, demo/gallery.R: update sppanel usage

2015-03-17 18:16  edzer

	* R/spplot.R: col specification for panel.polygonsplot, by Josh
	  O'Brien

2015-03-16 16:51  edzer

	* man/spplot.Rd: typo

2015-03-15 15:04  edzer

	* NAMESPACE, R/Spatial-methods.R, R/spplot.R, man/spplot.Rd:
	  refactor sp.layout argument; drop requirement to name function,
	  allow mixing Spatial* objects; introduce sppanel generic.

2015-03-15 11:38  edzer

	* R/spplot.R, demo/depend.R: sp.lines now obeys col argument longer
	  than one, email from Josh O'Brien

2015-03-10 14:39  edzer

	* demo/depend.R: change cran mirror

2015-03-09 20:54  edzer

	* DESCRIPTION, R/SpatialPointsDataFrame-methods.R, R/overlay.R,
	  tests/fail1.Rout.save, tests/pass1.R, tests/pass1.Rout.save: add
	  back overlay; tidy SpatialPointsDataFrame(), add tests

2015-03-09 11:53  edzer

	* R/SpatialPointsDataFrame-methods.R, man/SpatialPoints.Rd,
	  tests/fail1.Rout.save, tests/pass1.R, tests/pass1.Rout.save:
	  match.ID is now missing in SpatialPointsDataFrame(), a warning is
	  given if matching is applied but match.ID was not set; see the
	  examples in the docs.

2015-03-09 10:36  rsbivand

	* DESCRIPTION: remove overlay.R from Collate

2015-03-09 10:20  edzer

	* R/SpatialPointsDataFrame-methods.R, man/SpatialPoints.Rd:
	  match.ID defaults to TRUE if coords is not a data.frame,
	  otherwise FALSE (for backward compatibility)

2015-03-09 10:07  edzer

	* DESCRIPTION, R/CRS-methods.R, R/Class-CRS.R,
	  R/Class-SpatialGrid.R, R/Class-SpatialGridDataFrame.R,
	  R/Class-SpatialPoints.R, R/Class-SpatialPointsDataFrame.R,
	  R/Spatial-methods.R, R/SpatialGridDataFrame-methods.R,
	  R/SpatialLines-methods.R, R/SpatialPoints-methods.R,
	  R/SpatialPointsDataFrame-methods.R, R/SpatialPolygons-methods.R,
	  R/rbind.R, R/subset.R, man/sp-deprecated.Rd, src/sp_xports.c,
	  tests/pass1.R, tests/pass1.Rout.save: improve coordinates() logic
	  to keep row.names of data.frame's
	  improve support for zero-feature objects (subset, rbind)
	  add rgdal check on CRS() if rgdal is installed, instead of loaded
	  have $<- promote a SpatialXxx to a SpatialXxxDataFrame
	  Version bump to 1.1-0

2015-03-05 23:58  edzer

	* NAMESPACE: remove duplicated gridat

2015-03-02 17:30  edzer

	* vignettes/over.Rnw: update `over' vignette

2015-03-02 15:04  edzer

	* vignettes/over.Rnw: update

2015-03-02 12:57  edzer

	* R/over.R, man/over.Rd: call `over' methods in rgeos automatically

2015-03-02 11:19  edzer

	* R/CRS-methods.R, R/Spatial-methods.R, man/spTransform.Rd,
	  tests/fail1.Rout.save: load rgdal namespace when needed for
	  spTransform, clean up methods

2015-03-02 10:21  edzer

	* R/Spatial-methods.R, man/Spatial-class.Rd: allow $<- on
	  geometry-only objects, promoting them to *DataFrame

2015-02-26 21:00  edzer

	* DESCRIPTION, R/overlay.R, R/projected.R, R/spsample.R,
	  man/is.projected.Rd, man/sp-deprecated.Rd: remove overlay()
	  methods altogether, leaving generic for raster
	  tidy & clean projected.R
	  add warning to spsample.SpatialLines when data are longlat

2015-02-20 14:36  rsbivand

	* DESCRIPTION: add sp contributors

2015-02-19 21:14  edzer

	* R/SpatialGrid-methods.R: further optimize of plot.SpatialPixels

2015-02-19 17:25  edzer

	* R/SpatialGrid-methods.R, man/SpatialPixels-class.Rd: reduce
	  number of segments() calls to inprove performance

2015-02-19 15:57  edzer

	* .Rbuildignore, R/SpatialGrid-methods.R,
	  man/SpatialPixels-class.Rd: plotting SpatialGrid or SpatialPixels
	  now plots a grid, unless grid = FALSE

2015-02-19 14:05  edzer

	* DESCRIPTION, R/Class-CRS.R, R/Class-GridTopology.R,
	  R/Class-Spatial.R, R/Class-SpatialGrid.R,
	  R/Class-SpatialGridDataFrame.R, R/Class-SpatialLines.R,
	  R/Class-SpatialLinesDataFrame.R, R/Class-SpatialPoints.R,
	  R/Class-SpatialPointsDataFrame.R, R/Class-SpatialPolygons.R,
	  R/Class-SpatialPolygonsDataFrame.R, R/SpatialGrid-methods.R,
	  man/over.Rd: increase dependency on R >= 3.0.0, replace
	  representation by slots;
	  remove prototypes from class definitions

2015-01-24 18:54  edzer

	* man/addattr.Rd, man/over.Rd, man/spsample.Rd: cleanup references
	  to overlay

2015-01-23 21:15  edzer

	* man/SpatialPoints.Rd: correct docs regarding what match.ID
	  exactly does

2015-01-22 12:27  edzer

	* R/SpatialPoints-methods.R, R/spsample.R, man/spsample.Rd,
	  tests/grid.Rout.save: fix SpatialPointsDataFrame match.ID issue,
	  raised in
	  https://stat.ethz.ch/pipermail/r-sig-geo/2015-January/022242.html;
	  fix makegrid bug in case of negative bbox

2015-01-19 20:36  edzer

	* R/spplot.R: sp.panel.layout is now also called after the points
	  are plotted

2015-01-18 22:17  edzer

	* DESCRIPTION, R/spplot.R, man/spplot.Rd: bump version; allow list
	  for colorkey argument in spplot

2015-01-15 12:10  edzer

	* DESCRIPTION: Title Case Title

2014-12-23 19:56  edzer

	* inst/ChangeLog, man/meuse.riv.Rd: add plot to example

2014-12-23 14:57  edzer

	* data/meuse.area.rda, demo/meuse.R, man/meuse.riv.Rd: add
	  meuse.area outline of meuse.grid

2014-12-05 14:52  edzer

	* R/over.R: add comment

2014-12-05 14:51  edzer

	* R/SpatialPoints-methods.R, R/SpatialPointsDataFrame-methods.R:
	  add error messages when NA values occur in SpatialPoints objects

2014-11-17 14:32  edzer

	* R/merge.R: y -> dy

2014-11-16 19:12  edzer

	* DESCRIPTION, R/merge.R, man/merge.Rd: add duplicateGeoms argument
	  to merge(), add Robert as ctb

2014-11-09 11:21  edzer

	* R/CRS-methods.R, R/disaggregate.R, inst/ChangeLog: release
	  candidate 1.0-16

2014-11-09 10:45  edzer

	* inst/ChangeLog: ready for release

2014-09-23 19:59  edzer

	* R/aggregate.R: add call to match.fun()

2014-09-20 14:11  edzer

	* tests/sel.Rout.save: named results: make test align with change
	  in over

2014-09-19 20:28  edzer

	* R/over.R, vignettes/over.Rnw: the output list or vector of over()
	  is now named

2014-08-31 11:16  edzer

	* R/Spatial-methods.R, R/SpatialLines-methods.R,
	  R/SpatialPoints-methods.R, R/image.R: plot now accepts more of
	  plot.default's behaviour

2014-08-22 22:07  edzer

	* R/aggregate.R, R/disaggregate.R, R/sp_spat1.R: moved require(xx);
	  foo() into requireNamespace(xx) xx:foo() calls,
	  see
	  http://cran.r-project.org/doc/manuals/r-patched/R-exts.html#Suggested-packages

2014-08-10 19:07  edzer

	* R/zerodist.R, inst/ChangeLog, man/zerodist.Rd, src/init.c,
	  src/sp.h, src/zerodist.c: add memcmp option to zerodist() family,
	  to allow for double arithmetic fall back
2015-05-30 11:05:17 +00:00
wen
f5f3182612 Update to 1.4.21
Upstream changes:
30 March 2015: statmod 1.4.21

- qinvgauss() now treats input arguments of different lengths or NA
  parameter values more carefully.

- elda() now gracefully removes structural zeros, i.e., rows where
  the number of cells or the number of assays is zero.

- S3 print and plot methods for "limdil" class now registered.

- Use of require("tweedie") in the qres.tweedie() code replaced by
  requireNameSpace("tweedie").
2015-05-30 10:50:34 +00:00
wen
fb244a04fa Update to 1.7.12
Upstream changes:
Changes in Version 1.7-12

  o read.zoo with a data.frame argument now defaults to FUN = identity
    if the index.column is not character or factor.  See ?read.zoo for
    additional details.

  o Added a dim<- method that checks whether the new dimension value
    appears to be ok and then calls the default.

  o The index<- and time<- methods now enforce that the new time index
    is actually correctly ordered (suggested by Joshua Ulrich).

  o read.zoo() heuristic improved so that POSIXct rather than Date is
    detected in cases like: read.zoo(text = "2010-01-01 12:05:03 88.1",
    index = 1:2).

  o The fortify() method now has a col.names argument that allows to set
    (some of) the column names of the resulting data.frame.

  o Various small bug fixes and enhancements.
2015-05-30 10:37:38 +00:00
wen
b58f1c2c1d Update to 1.1.2
No upstream changelog.
2015-05-30 10:30:08 +00:00
jperkin
dc523b93d0 Fix symbol visibility, package now builds on SunOS. 2015-05-26 13:38:20 +00:00
jperkin
e15d9b13b1 Put back missing PLIST entries lost in previous update. 2015-05-26 13:36:57 +00:00
joerg
f130524866 Disable assembler on ARM, it doesn't work with EABI. Don't put a
variable with C linkage in a namespace, clang (correctly) complains
about the shadowing (re)declarations. Bump revision.
2015-05-15 09:17:03 +00:00
ryoon
363e4b9b79 Update to 3.2.0
Changelog:
CHANGES IN 3.2.0:

  NEW FEATURES:

    * anyNA() gains a recursive argument.

    * When x is missing and names is not false (including the default
      value), Sys.getenv(x, names) returns an object of class "Dlist"
      and hence prints tidily.

    * (Windows.)  shell() no longer consults the environment variable
      SHELL: too many systems have been encountered where it was set
      incorrectly (usually to a path where software was compiled, not
      where it was installed).  R_SHELL, the preferred way to select a
      non-default shell, can be used instead.

    * Some unusual arguments to embedFonts() can now be specified as
      character vectors, and the defaults have been changed
      accordingly.

    * Functions in the Summary group duplicate less.  (PR#15798)

    * (Unix-alikes.) system(cmd, input = ) now uses
      'shell-execution-environment' redirection, which will be more
      natural if cmd is not a single command (but requires a
      POSIX-compliant shell). (Wish of PR#15508)

    * read.fwf() and read.DIF() gain a fileEncoding argument, for
      convenience.

    * Graphics devices can add attributes to their description in
      .Device and .Devices.  Several of those included with R use a
      "filepath" attribute.

    * pmatch() uses hashing in more cases and so is faster at the
      expense of using more memory. (PR#15697)

    * pairs() gains new arguments to select sets of variables to be
      plotted against each other.

    * file.info(, extra_cols = FALSE) allows a minimal set of columns
      to be computed on Unix-alikes: on some systems without
      properly-configured caching this can be significantly faster with
      large file lists.

    * New function dir.exists() in package base to test efficiently
      whether one or more paths exist and are directories.

    * dput() and friends gain new controls hexNumeric and digits17
      which output double and complex quantities as, respectively,
      binary fractions (exactly, see sprintf("%a")) and as decimals
      with up to 17 significant digits.

    * save(), saveRDS() and serialize() now support ascii = NA which
      writes ASCII files using sprintf("%a") for double/complex
      quantities.  This is read-compatible with ascii = TRUE but avoids
      binary->decimal->binary conversions with potential loss of
      precision.  Unfortunately the Windows C runtime's lack of C99
      compliance means that the format cannot be read correctly there
      in R before 3.1.2.

    * The default for formatC(decimal.mark =) has been changed to be
      getOption("OutDec"); this makes it more consistent with format()
      and suitable for use in print methods, e.g. those for classes
      "density", "ecdf", "stepfun" and "summary.lm".

      getOption("OutDec") is now consulted by the print method for
      class "kmeans", by cut(), dendrogram(), plot.ts() and quantile()
      when constructing labels and for the report from legend(trace =
      TRUE).

      (In part, wish of PR#15819.)

    * printNum() and hence format() and formatC() give a warning if
      big.mark and decimal.mark are set to the same value (period and
      comma are not uncommonly used for each, and this is a check that
      conventions have not got mixed).

    * merge() can create a result which uses long vectors on 64-bit
      platforms.

    * dget() gains a new argument keep.source which defaults to FALSE
      for speed (dput() and dget() are most often used for data objects
      where this can make dget() many times faster).

    * Packages may now use a file of common macro definitions in their
      help files, and may import definitions from other packages.

    * A number of macros have been added in the new share/Rd directory
      for use in package overview help pages, and promptPackage() now
      makes use of them.

    * tools::parse_Rd() gains a new permissive argument which converts
      unrecognized macros into text.  This is used by
      utils:::format.bibentry to allow LaTeX markup to be ignored.

    * options(OutDec =) can now specify a multi-byte character, e.g.,
      options(OutDec = "\u00b7") in a UTF-8 locale.

    * is.recursive(x) is no longer true when x is an external pointer,
      a weak reference or byte code; the first enables all.equal(x, x)
      when x <- getClass(.).

    * ls() (aka objects()) and as.list.environment() gain a new
      argument sorted.

    * The "source" attribute (which has not been added to functions by
      R since before R version 2.14.0) is no longer treated as special.

    * Function returnValue() has been added to give on.exit() code
      access to a function's return value for debugging purposes.

    * crossprod(x, y) allows more matrix coercions when x or y are
      vectors, now equalling t(x) %*% y in these cases (also reported
      by Radford Neal).  Similarly, tcrossprod(x,y) and %*% work in
      more cases with vector arguments.

    * Utility function dynGet() useful for detecting cycles, aka
      infinite recursions.

    * The byte-code compiler and interpreter include new instructions
      that allow many scalar subsetting and assignment and scalar
      arithmetic operations to be handled more efficiently. This can
      result in significant performance improvements in scalar
      numerical code.

    * apply(m, 2, identity) is now the same as the matrix m when it has
      _named_ row names.

    * A new function debuggingState() has been added, allowing to
      temporarily turn off debugging.

    * example() gets a new optional argument run.donttest and
      tools::Rd2ex() a corresponding commentDonttest, with a default
      such that example(..) in help examples will run \donttest code
      only if used interactively (a change in behaviour).

    * rbind.data.frame() gains an optional argument make.row.names, for
      potential speedup.

    * New function extSoftVersion() to report on the versions of
      third-party software in use in this session.  Currently reports
      versions of zlib, bzlib, the liblzma from xz, PCRE, ICU, TRE and
      the iconv implementation.

      A similar function grSoftVersion() in package grDevices reports
      on third-party graphics software.

      Function tcltk::tclVersion() reports the Tcl/Tk version.

    * Calling callGeneric() without arguments now works with primitive
      generics to some extent.

    * vapply(x, FUN, FUN.VALUE) is more efficient notably for large
      length(FUN.VALUE); as extension of PR#16061.

    * as.table() now allows tables with one or more dimensions of
      length 0 (such as as.table(integer())).

    * names(x) <- NULL now clears the names of call and ... objects.

    * library() will report a warning when an insufficient dependency
      version is masking a sufficient one later on the library search
      path.

    * A new plot() method for class "raster" has been added.

    * New check_packages_in_dir_changes() function in package tools for
      conveniently analyzing how changing sources impacts the check
      results of their reverse dependencies.

    * Speed-up from Peter Haverty for ls() and
      methods:::.requirePackage() speeding up package loading.
      (PR#16133)

    * New get0() function, combining exists() and get() in one call,
      for efficiency.

    * match.call() gains an envir argument for specifying the
      environment from which to retrieve the ... in the call, if any;
      this environment was wrong (or at least undesirable) when the
      definition argument was a function.

    * topenv() has been made .Internal() for speedup, based on Peter
      Haverty's proposal in PR#16140.

    * getOption() no longer calls options() in the main case.

    * Optional use of libcurl (version 7.28.0 from Oct 2012 or later)
      for Internet access:

        * capabilities("libcurl") reports if this is available.

        * libcurlVersion() reports the version in use, and other
          details of the "libcurl" build including which URL schemes it
          supports.

        * curlGetHeaders() retrieves the headers for http://, https://,
          ftp:// and ftps:// URLs: analysis of these headers can
          provide insights into the `existence' of a URL (it might for
          example be permanently redirected) and is so used in R CMD
          check --as-cran.

        * download.file() has a new optional method "libcurl" which
          will handle more URL schemes, follow redirections, and allows
          simultaneous downloads of multiple URLs.

        * url() has a new method "libcurl" which handles more URL
          schemes and follows redirections.  The default method is
          controlled by a new option url.method, which applies also to
          the opening of URLs _via_ file() (which happens implicitly in
          functions such as read.table.)

        * When file() or url() is invoked with a https:// or ftps://
          URL which the current method cannot handle, it switches to a
          suitable method if one is available.

    * (Windows.) The DLLs internet.dll and internet2.dll have been
      merged.  In this version it is safe to switch (repeatedly)
      between the internal and Windows internet functions within an R
      session.

      The Windows internet functions are still selected by flag
      --internet2 or setInternet2().  This can be overridden for an
      url() connection _via_ its new method argument.

      download.file() has new method "wininet", selected as the default
      by --internet2 or setInternet2().

    * parent.env<- can no longer modify the parent of a locked
      namespace or namespace imports environment.  Contributed by Karl
      Millar.

    * New function isLoadedNamespace() for readability and speed.

    * names(env) now returns all the object names of an environment
      env, equivalently to ls(env, all.names = TRUE, sorted = FALSE)
      and also to the names of the corresponding list,
      names(as.list(env, all.names = TRUE)).  Note that although
      names() returns a character vector, the names have no particular
      ordering.

    * The memory manager now grows the heap more aggressively. This
      reduces the number of garbage collections, in particular while
      data or code are loaded, at the expense of slightly increasing
      the memory footprint.

    * New function trimws() for removing leading/trailing whitespace.

    * cbind() and rbind() now consider S4 inheritance during S3
      dispatch and also obey deparse.level.

    * cbind() and rbind() will delegate recursively to methods::cbind2
      (methods::rbind2) when at least one argument is an S4 object and
      S3 dispatch fails (due to ambiguity).

    * (Windows.)  download.file(quiet = FALSE) now uses text rather
      than Windows progress bars in non-interactive use.

    * New function hsearch_db() in package utils for building and
      retrieving the help search database used by help.search(), along
      with functions for inspecting the concepts and keywords in the
      help search database.

    * New function .getNamespaceInfo(), a no-check version of
      getNamespaceInfo() mostly for internal speedups.

    * The help search system now takes \keyword entries in Rd files
      which are not standard keywords (as given in KEYWORDS in the R
      documentation directory) as concepts.  For standard keyword
      entries the corresponding descriptions are additionally taken as
      concepts.

    * New lengths() function for getting the lengths of all elements in
      a list.

    * New function toTitleCase() in package tools, tailored to package
      titles.

    * The matrix methods of cbind() and rbind() allow matrices as
      inputs which have 2^31 or more elements.  (For cbind(), wish of
      PR#16198.)

    * The default method of image() has an explicit check for a numeric
      or logical matrix (which was always required).

    * URLencode() will not by default encode further URLs which appear
      to be already encoded.

    * BIC(mod) and BIC(mod, mod2) now give non-NA numbers for arima()
      fitted models, as nobs(mod) now gives the number of "used"
      observations for such models.  This fixes PR#16198, quite
      differently than proposed there.

    * The print() methods for "htest", "pairwise.htest" and
      "power.htest" objects now have a digits argument defaulting to (a
      function of) getOption("digits"), and influencing all printed
      numbers coherently.  Unavoidably, this changes the display of
      such test results in some cases.

    * Code completion for namespaces now recognizes all loaded
      namespaces, rather than only the ones that are also attached.

    * The code completion mechanism can now be replaced by a
      user-specified completer function, for (temporary) situations
      where the usual code completion is inappropriate.

    * unzip() will now warn if it is able to detect truncation when
      unpacking a file of 4GB or more (related to PR#16243).

    * methods() reports S4 in addition to S3 methods; output is
      simplified when the class argument is used.  .S3methods() and
      methods::.S4methods() report S3 and S4 methods separately.

    * Higher order functions such as the apply functions and Reduce()
      now force arguments to the functions they apply in order to
      eliminate undesirable interactions between lazy evaluation and
      variable capture in closures.  This resolves PR#16093.

  INSTALLATION and INCLUDED SOFTWARE:

    * The \donttest sections of R's help files can be tested by
      make check TEST_DONTTEST=TRUE .

    * It is possible to request the use of system valgrind headers
      _via_ configure option --with-system-valgrind-headers: note the
      possible future incompatibility of such headers discussed in the
      'R Installation and Administration' manual. (Wish of PR#16068.)

    * The included version of liblzma has been updated to xz-utils
      5.0.7 (minor bug fixes from 5.0.5).

    * configure options --with-system-zlib, --with-system-bzlib and
      --with-system-pcre are now the default.  For the time being there
      is fallback to the versions included in the R sources if no
      system versions are found or (unlikely) if they are too old.

      Linux users should check that the -devel or -dev versions of
      packages zlib, bzip2/libbz2 and pcre as well as
      xz-devel/liblzma-dev (or similar names) are installed.

    * configure by default looks for the texi2any script from texinfo
      5.1 or later, rather than the makeinfo program.  (makeinfo is a
      link to the Perl script texi2any in texinfo 5.x.)

    * R CMD INSTALL gains an option --built-timestamp=STAMP allowing
      100% reproducible package building, thanks to Dirk Eddelbuettel.

  UTILITIES:

    * There is support for testing the \dontrun and \donttest parts of
      examples in packages.

      tools::testInstalledPackage() accepts new arguments
      commentDontrun = FALSE and commentDonttest = FALSE.

      R CMD check gains options --run-dontrun and --run-donttest.

    * The HTML generated by tools::Rd2HTML() and tools::toHTML()
      methods is now 'XHTML 1.0 Strict'.

    * The compiler package's utility function setCompilerOptions() now
      returns the old values invisibly. The initial optimization level
      can also be set with the environment variable
      R_COMPILER_OPTIMIZE.

    * R CMD build adds a NeedsCompilation field if one is not already
      present in the DESCRIPTION file.

    * R CMD check gains option --test-dir to specify an alternative set
      of tests to run.

    * R CMD check will now by default continue with testing after many
      types of errors, and will output a summary count of errors at the
      end if any have occurred.

    * R CMD check now checks that the Title and Description fields are
      correctly terminated.

    * R CMD check --as-cran now:

        * checks a README.md file can be processed: this needs pandoc
          installed.

        * checks the existence and accessibility of URLs in the
          DESCRIPTION, CITATION, NEWS.Rd and README.md files and in the
          help files (provided the build has libcurl support).

        * reports non-ASCII characters in R source files when there is
          no package encoding declared in the DESCRIPTION file.

        * reports (apparent) S3 methods exported but not registered.

        * reports overwriting registered S3 methods from
          base/recommended packages.  (Such methods are replaced in the
          affected package for the rest of the session, even if the
          replacing namespace is unloaded.)

        * reports if the Title field does not appear to be in title
          case (see 'Writing R Extensions': there may be false
          positives, but note that technical words should be
          single-quoted and will then be accepted).

      Most of these checks can also be selected by environment
      variables: see the 'R Internals' manual.

  C-LEVEL FACILITIES:

    * New C API utility logspace_sum(logx[], n).

    * Entry points rbinom_mu, rnbinom_mu and rmultinom are remapped (by
      default) to Rf_rbinom_mu etc.  This requires packages using them
      to be re-installed.

    * .C(DUP = FALSE) and .Fortran(DUP = FALSE) are now ignored, so
      arguments are duplicated if DUP = TRUE would do so.  As their
      help has long said, .Call() is much preferred.

    * New entry point R_allocLD, like R_alloc but guaranteed to have
      sufficient alignment for long double pointers.

    * isPairList() now returns TRUE for DOTSXP.

  WINDOWS BUILD CHANGES:

  A number of changes to the Windows build system are in development.
  The following are currently in place.

    * Installation using external binary distributions of zlib, bzip2,
      liblzma, pcre, libpng, jpeglib and libtiff is now required, and
      the build instructions have been revised.

    * A new make target rsync-extsoft has been added to obtain copies
      of the external libraries from CRAN.

    * Building the manuals now requires texi2any from texinfo 5.1 or
      later.  CRAN binary builds include the manuals, but by default
      builds from source will not, and they will be accessed from CRAN.
      See the comments in src/gnuwin32/MkRules.dist for how to specify
      the location of texi2any.

    * (Windows) Changes have been made to support an experimental
      Windows toolchain based on GCC 4.9.2.  The default toolchain
      continues to be based on GCC 4.6.3, as the new toolchain is not
      yet stable enough.  A change to a new toolchain is expected
      during the R 3.2.x lifetime.

  PACKAGE INSTALLATION:

    * (Windows) The use of macro ZLIB_LIBS in file src/Makevars.win
      (which has not been documented for a long time) now requires an
      external libz.a to be available (it is part of the 'goodies' used
      to compile Windows binary packages).  It would be simpler to use
      -lz instead.

    * The default for option pkgType on platforms using binary packages
      is now "both", so source packages will be tried if binary
      versions are not available or not up to date.

      There are options for what install.packages(type = "both")
      (possibly called _via_ update.packages()) will do if compilation
      of a source package is desirable: see ?options (under utils).

      If you intend not to accept updates as source packages, you
      should use update.packages(type = "binary").

  DEPRECATED AND DEFUNCT:

    * download.file(method = "lynx") is defunct.

    * Building R using the included versions of zlib, bzip2, xz and
      PCRE is deprecated: these are frozen (bar essential bug-fixes)
      and will be removed for R 3.3.0.

    * The configure option --with-valgrind-instrumentation=3 has been
      withdrawn, as it did not work with recent valgrind headers: it is
      now treated as level 2.

    * The MethodsList class in package methods had been deprecated in R
      2.11.0 and is defunct now.  Functions using it are defunct if
      they had been deprecated in R 2.11.0, and are deprecated now,
      otherwise.

  BUG FIXES:

    * Fixed two obscure bugs in pairlist subassignment, reported by
      Radford Neal as part of pqR issue 16.

    * Fixes for bugs in handling empty arguments and argument matching
      by name in log().

    * all.equal() gains methods for environments and refClasses.

    * [<- and [[<- gain S4 data.frame methods to avoid corruption of S4
      class information by the S3 methods.

    * callNextMethod() should now work within a .local call when ... is
      absent from formals(.local).

    * dput(pairlist(x)) generates a call to the pairlist constructor
      instead of the list constructor.

    * Fix missing() when arguments are propagated through ... .
      (PR#15707)

    * eigen(m) now defaults to symmetric = TRUE even when the dimnames
      are asymmetric if the matrix is otherwise symmetric.  (PR#16151)

    * Fix issues with forwarding ... through callGeneric() and
      callNextMethod().  (PR#16141)

    * callGeneric() now works after a callNextMethod().

    * Subclass information is kept consistent when replacing an
      ordinary S4 class with an "old class" _via_ the S4Class argument
      to setOldClass(). Thus, for example, a data.frame is valid for a
      list argument in the signature, and a factor is valid for vector
      arguments.

    * In qbeta() the inversion of pbeta() is much more sophisticated.
      This works better in corner cases some of which failed completely
      previously (PR#15755), or were using too many iterations.

    * Auto-printing no longer duplicates objects when printing is
      dispatched to a method.

    * kmeans(x, k) would fail when nrow(x) >= 42949673.  (Comment 6 of
      PR#15364)

    * 'Abbreviated' locale-specific day and month names could have been
      truncated in those rare locales where there are the same as the
      full names.

    * An irrelevant warning message from updating subclass information
      was silenced (the namespace would not be writable in this case).

CHANGES IN R 3.1.3:

  NEW FEATURES:

    * The internal method of download.file() can now handle files
      larger than 2GB on 32-bit builds which support such files (tested
      on 32-bit R running on 64-bit Windows).

    * kruskal.test() warns on more types of suspicious input.

    * The as.dendrogram() method for "hclust" objects gains a check
      argument protecting against memory explosion for invalid inputs.

    * capabilities() has a new item long.double which indicates if the
      build uses a long double type which is longer than double.

    * nlm() no longer modifies the callback argument in place (a new
      vector is allocated for each invocation, which mimics the
      implicit duplication that occurred in R < 3.1.0); note that this
      is a change from the previously documented behavior. (PR#15958)

    * icuSetCollate() now accepts locale = "ASCII" which uses the basic
      C function strcmp and so collates strings byte-by-byte in
      numerical order.

    * sessionInfo() tries to report the OS version in use (not just
      that compiled under, and including details of Linux
      distributions).

    * model.frame() (used by lm() and many other modelling functions)
      now warns when it drops contrasts from factors.  (Wish of
      PR#16119)

    * install.packages() and friends now accept the value type =
      "binary" as a synonym for the native binary type on the platform
      (if it has one).

    * Single source or binary files can be supplied for
      install.packages(type = "both") and the appropriate type and
      repos = NULL will be inferred.

    * New function pcre_config() to report on some of the configuration
      options of the version of PCRE in use.  In particular, this
      reports if regular expressions using \p{xx} are supported.

    * (Windows.) download.file(cacheOK = FALSE) is now supported when
      internet2.dll is used.

    * browseURL() has been updated to work with Firefox 36.0 which has
      dropped support for the -remote interface.

  INSTALLATION and INCLUDED SOFTWARE:

    * The included version of PCRE has been updated to 8.36.

    * configure accepts MAKEINFO=texi2any as another way to ensure
      texinfo 5.x is used when both 5.x and 4.x are installed.

  UTILITIES:

    * R CMD check now checks the packages used in \donttest sections of
      the examples are specified in the DESCRIPTION file.  (These are
      needed to run the examples interactively.)

    * R CMD check checks for the undeclared use of GNU extensions in
      Makefiles, and for Makefiles with a missing final linefeed.

      R CMD build will correct line endings in all Makefiles, not just
      those in the src directory.

    * R CMD check notes uses of library() and require() in package
      code: see the section 'Suggested packages' of 'Writing R
      Extensions' for good practice.

  DEPRECATED AND DEFUNCT:

    * The configure option --with-valgrind-instrumentation=3 is
      deprecated and will be removed in R 3.2.0.

  BUG FIXES:

    * (Windows.) Rscript.exe was missing a manifest specifying the
      modern style for common controls (e.g., the download progress
      bar).

    * If a package had extra documentation files but no vignette, the
      HTML help system produced an empty index page.

    * The parser now gives an error if a null character is included in
      a string using Unicode escapes. (PR#16046)

    * qr.Q() failed on complex arguments due to pre-3.0(!) typo.
      (PR#16054)

    * abs() failed with named arguments when the argument was complex.
      (PR#16047)

    * "noquote" objects may now be used as columns in dataframes.
      (PR#15997)

    * Some values with extremely long names were printed incorrectly.
      (PR#15999)

    * Extremely large exponents on zero expressed in scientific
      notation (e.g. 0.0e50000) could give NaN.  (PR#15976)

    * download.file() reported downloaded sizes as 0KB if less than
      1MB, only for R 3.1.2 and only on big-endian platforms.

    * prompt() did not escape percent signs in the automatically
      generated usage section of help files.

    * drop.terms() dropped some of the attributes of the object it was
      working with.  (PR#16029)

    * (Windows.) The command completion in Rgui.exe messed up the
      console.  (PR#15791)

    * (Windows.) The choose.files() command returned a blank string
      when the user asked for a single file but cancelled the request.
      (PR#16074)

    * Math2 S4 group generics failed to correctly dispatch "structure"-
      and "nonStructure"-derived classes.

    * loadNamespace() imposed undocumented restrictions on the
      versionCheck parameter.  (Reported by Geoff Lee.)

    * Rare over-runs detected by AddressSanitizer in substr() and its
      replacement version have been avoided.

      _Inter alia_ that fix gives the documented behaviour for
      substr(x, 1, 2) <- "" (subsequently reported as PR#16214).

    * Loading packages incorrectly defining an S4 generic followed by a
      function of the same name caused an erroneous cyclic namespace
      dependency error.

    * Declared vignette encodings are now always passed to the vignette
      engine.

    * Port Tomas Kalibera's fix from R-devel that restores the
      loadMethod() fast path, effectively doubling the speed of S4
      dispatch.

    * power.t.test() and power.prop.test() now make use of the
      extendInt option of uniroot() and hence work in more extreme
      cases.  (PR#15792)

    * If a package was updated and attached when its namespace was
      already loaded, it could end up with parts from one version and
      parts from the other.  (PR#16120)

    * tools:::.Rdconv() didn't accept --encoding= due to a typo.
      (PR#16121)

    * Unix-alike builds without a suitable makeinfo were documented to
      link the missing HTML manuals to CRAN, but did not.

    * save(*, ascii=TRUE) and load() now correctly deal with NaN's.
      (PR#16137)

    * split.Date() retains fractional representations while avoiding
      incomplete class propagation.

    * R_ext/Lapack.h had not been updated for changes made by LAPACK to
      the argument lists of its (largely internal) functions dlaed2 and
      dlaed3.  (PR#16157)

    * RShowDoc("NEWS", "txt") had not been updated for the layout
      changes of R 3.1.0.

    * The xtfrm() method for class "Surv" has been corrected and its
      description expanded.

    * mode(x) <- y would incorrectly evaluate x before changing its
      mode. (PR#16215)

    * besselJ(1, 2^64) and besselY(..) now signal a warning, returning
      NaN instead of typically segfaulting. (Issue 3 of PR#15554)

    * HTML conversion of \href markup in .Rd files did not remove the
      backslash from \% and so gave an invalid URL.  In a related
      change, the \ escape is now required in such URLs.

CHANGES IN R 3.1.2:

  NEW FEATURES:

    * embedFonts() now defaults to format = "ps2write" for .ps and .eps
      files.  This is available in Ghostscript 9.x (since 2010) whereas
      the previous default, format = "pswrite", was removed in
      Ghostscript 9.10.

    * For consistency with [dpqr]norm(), [dp]lnorm(sdlog = 0) model a
      point mass at exp(mulog) rather than return NaN (for an error).

    * capabilities() now reports if ICU is compiled in for use for
      collation (it is only actually used if a suitable locale is set
      for collation, and never for a C locale).

    * (OS X only.) Package tcltk checks when loaded if it is linked
      against the CRAN X11-based Tcl/Tk and if so that the Tcl/Tk
      component and the X11 libraries are installed.  This allows more
      informative error messages to be given advising the installation
      of the missing component or of XQuartz.

      The X11() device and X11-based versions of the data editor and
      viewer (invoked by edit() and View() for data frames and matrices
      from command-line R) check that the X11 libraries are installed
      and if not advises installing XQuartz.

    * icuSetCollate() allows locale = "default", and locale = "none" to
      use OS services rather than ICU for collation.

      Environment variable R_ICU_LOCALE can be used to set the default
      ICU locale, in case the one derived from the OS locale is
      inappropriate (this is currently necessary on Windows).

    * New function icuGetCollate() to report on the ICU collation
      locale in use (if any).

    * utils::URLencode() was updated to use unreserved and reserved
      characters from RFC 3986 (<URL:
      http://tools.ietf.org/html/rfc3986>) instead of RFC 1738.

    * unique(warnings()) and c(warnings()) are now supported.

    * The Bioconductor 'version' used by setRepositories() now defaults
      to 3.0. (It can be set at runtime _via_ environment variable
      R_BIOC_VERSION.)

    * Omegahat is no longer listed as providing Windows binary
      packages, e.g. by setRepositories().  It has no binary packages
      available for R 3.1.x and those for earlier versions were 32-bit
      only.

  INSTALLATION and INCLUDED SOFTWARE:

    * The configure script reports on the more important
      capabilities/options which will not be compiled in.

      More types of external BLAS are recognized by name in that
      report.

    * When building R as a shared library, the -L${R_HOME}/lib${R_ARCH}
      flag is placed earlier in the link commands used during
      installation and when packages are installed: this helps ensure
      that the current build has priority if an R shared library has
      already been installed by e.g. install-libR in a library
      mentioned in LDFLAGS (and not in 'your system's library
      directory' as documented). (Wish of PR#15790.)

    * LaTeX package upquote is no longer required for R's use of
      inconsolata.

    * (Windows only) If both 32- and 64-bit versions of R are
      installed, the bin/R.exe and bin/Rscript.exe executables now run
      64-bit R.  (To run 32-bit R, overwrite these files with copies of
      bin/i386/Rfe.exe.)

  UTILITIES:

    * Running R CMD check with _R_CHECK_DEPENDS_ONLY_ true now makes
      the VignetteBuilder packages available even if they are listed in
      Suggests, since they are needed to recognise and process
      non-Sweave vignettes.

    * R CMD check now reports empty importFrom declarations in a
      NAMESPACE file, as these are common errors (writing
      importFrom(Pkg) where import(Pkg) was intended).

    * R CMD check now by default checks code usage directly on the
      package namespace without loading and attaching the package and
      its suggests and enhances.  For good practice with packages in
      the Suggests field, see SS1.1.3.1 of 'Writing R Extensions'.  For
      use of lazy-data objects in the package's own code, see ?data.

  BUG FIXES:

    * dmultinom() did not handle non-finite probabilities correctly.

    * prettyNum(x, zero.print=*) now also works when x contains NAs.

    * A longstanding bug exhibited by nlminb() on Windows was traced to
      a compiler bug in gcc 4.6.3; a workaround has been put in place.
      (PR#15244 and PR#15914).

    * Rendering of \command in HTML versions of help pages has been
      improved: this is particularly evident on the help page for
      INSTALL.

    * as.hexmode(x) and as.octmode(x) now behave correctly for some
      numeric x, e.g., c(NA, 1) or c(1, pi).

    * drop1() failed if the scope argument had no variables to drop.
      (PR#15935)

    * edit() (and hence fix()) failed if an object had a non-character
      attribute named "source" (an attribute that had been used in R
      prior to version 2.14.0).

    * callGeneric() could fail if the generic had ... as a formal
      argument. (PR#15937).

    * Forking in package parallel called C entry point exit in the
      child.  This was unsafe (_exit should have been called), and
      could flush stdin of the main R process (seen most often on
      Solaris).

      As good practice, stdout is now flushed before forking a child.

    * R objects such as list(`a\b` = 1) now print correctly.

    * getAnywhere("C_pbinom") now returns correctly a single object
      (rather than unlisting it).

    * The confint() method for nls() fits failed it these has specified
      parameter limits despite using an algorithm other than "port".
      (PR#15960)

    * Subclassing an S4 class failed if the class required arguments to
      the generator, through its initialize() method.

    * removeSource() did not properly handle expressions containing
      arguments that were supplied as missing, e.g.  x[i,]. (PR#15957)

    * as.environment(list()) now works, and as.list() of such an
      environment is now the same as list().

    * Several tcltk functions failed when run in unusual environments.
      (PR#15970)

    * options(list()) now works (trivially). (PR#15979)

    * merge(<dendrogram>, ..) now works correctly for two `independent'
      dendrograms (PR#15648), and still compatibly via adjust = "auto"
      e.g. for two branches of an existing dendrogram.

    * The plot method for "hclust" objects gets an optional argument
      check; When that is true (the default) it checks more carefully
      for valid input.

    * (Windows only) If a user chose to install 64 bit R but not 32 bit
      R, the bin/R and bin/Rscript executables failed to run.
      (PR#15981)

    * Various possible buffer overruns have been prevented, and missed
      memory protection added. (PR#15990)

    * Rscript no longer passes --args to R when there are no extra
      ("user") arguments.

    * objects like getClass("refClass")@prototype now print() and str()
      without error.

    * identical() now also looks at the S4 bit.

    * hist(x, breaks) is more robust in adding a small fuzz to few
      breaks when some are very large. (PR#15988)

    * sub() and gsub() did not handle regular expressions like "\s{2,}"
      properly if the text contained NA or non-ascii elements in a
      UTF-8 locale.  Part of this was due to a bug in the TRE library.
      (PR#16009)

    * RShowDoc("NEWS") now displays the PDF version.

    * Matrices and arrays with last dimension zero did not print at all
      or incompletely.  (PR#16012)

    * plot.histogram() and hence hist() now respect the xaxs, yaxs and
      lab graphics parameters.  (PR#16021)

    * bw.SJ(x) and other bw.*() no longer segfault when x contains
      non-finite values. (PR#16024)

    * R CMD Rd2pdf unintentionally ignored its --os option.

    * The internal method of download.file() was not reporting file
      sizes and progress correctly on files larger than 2GB (inherited
      from libxml2).  This is corrected for 64-bit builds (32-bit
      platforms may not support such files, but where possible will be
      supported in future versions of R).

    * Work around a bug in OS X Yosemite where key environment
      variables may be duplicated causing issues in subprocesses. The
      duplicates are now removed on R startup (via Rprofile).
      (PR#16042)

    * Adjust X11 auto-launch detection in DISPLAY on OS X to recognize
      latest XQuartz.
2015-05-13 12:48:05 +00:00
szptvlfn
d54e19e0a8 Because this error:
ERROR: hs-primitive>=0.5.4 is not installed; can't buildlink files.
Bump PKGREVISION for hs-primitive-0.5.4.0
2015-05-09 11:22:25 +00:00
wiz
8f3b6218b0 Reduce tex dependencies. Bump PKGREVISION. 2015-05-05 09:32:55 +00:00
markd
b6ff3cef2c Be more explicit in TeX dependencies. 2015-05-02 05:39:14 +00:00
wen
ed19800a89 Update to 1.32
Add LICENSE

Upstream changes:
1.32  2015-04-28
    - Specify minimum version of perl as 5.8.x
        - CPANTS / Kwalitee

1.31  2015-03-25
    - Convert n2 in _spctrm to "double" so it won't overflow as an int
        - Fix https://rt.cpan.org/Ticket/Display.html?id=22068
        - Thanks to thomas.poleschner@gmx.de for the report.

1.30  2015-03-25
    - Convert the test files to Test::More and do some other cleanups.

1.29  2015-03-05
    - Convert to Dist-Zilla.
    - Reformatted the code.
    - Get rid of trailing space.
    - Got to 100% POD coverage.
    - Other cleanups.
    - As the original maintainer (Randy Kobes) passed away, the distribution
    was adopted by Shlomi Fish (SHLOMIF).
2015-04-28 13:24:28 +00:00
markd
45c24496ae Add tex-apnum{,-doc} 2015-04-26 03:40:20 +00:00
markd
25f3b63d95 Add tex-apnum{,-doc} 1.1
Arbitrary precision numbers implemented by TeX macros
2015-04-26 03:39:03 +00:00
tnn
9ee4b877fb Recursive revbump following MesaLib update, categories g through n. 2015-04-25 14:22:51 +00:00
wiz
a3846f7971 Fix PLIST for python-3.x -- weave is only built for python-2.x. 2015-04-25 13:43:18 +00:00
dbj
e5b845f477 install .oct loadable modules with INSTALL_LIB to avoid stripping them
regenerate patch sums in distinfo
bump PKGREVISION
2015-04-23 06:50:41 +00:00
dbj
3d65d68f8e don't install lib/charset.alias which is reserved for libiconv 2015-04-23 06:49:40 +00:00
dbj
e186f873b0 don't assume gnuplot is configured with libaquaterm on mac 2015-04-23 06:48:53 +00:00
dbj
6cca3cf788 avoid obsolete darwin api for CGDisplayBitsPerPixel
use CGDisplayModeCopyPixelEncoding instead
2015-04-23 06:47:56 +00:00
dbj
9b4e7f261e install private zoneinfo files on Darwin where default is --with-internal-tzcode=yes 2015-04-23 06:40:27 +00:00
adam
4606c07235 Revbump after updating devel/boost-libs 2015-04-17 15:52:56 +00:00