Commit graph

3667 commits

Author SHA1 Message Date
wen
00fa5c8596 Add R-minqa 2015-10-05 01:14:06 +00:00
wen
211929c20f Import minqa-1.2.4 as math/R-minqa.
Derivative-free optimization by quadratic approximation based on
an interface to Fortran implementations by M. J. D. Powell.
2015-10-05 01:12:46 +00:00
taca
247d9cc624 Update ruby-spreadsheet to 1.0.7.
### 1.0.7 / 23.09.2015

Author: Leopoldo Lee Agdeppa III <leopoldo.agdeppa@gmail.com>
Date:   Wed Sep 23 08:24:16 2015 +0800

* Update worksheet.rb
* Adding Test for Freeze panels
* Update worksheet.rb
* Added freeze (freeze panel) functionality
* Update worksheet.rb
* Freeze (freeze window) functionality added to worksheet

### 1.0.6 / 14.09.2015

Author: Yann Plancqueel <yplancqueel@gmail.com>
Date:   Sat Sep 12 15:32:49 2015 +0200
2015-10-04 12:40:30 +00:00
prlw1
7fba9d3d4b Update maxima to 5.37.2
This release comprises some changes to the build machinery, notably
commit 49d1be0 which puts tests/tests.sh.in on list of files for
tarball. The Git log has the complete record.


Maxima 5.37 change log
======================

New items in core:
------------------

* new function with_default_2d_display: ensure pretty-printing output


New items in share:
-------------------

* new package cryptools: tools for cryptography
* new package elliptic_curves: elliptic curves over prime fields and binary fields
* new function cgrind: output Maxima expressions as C code
* package draw: new function vennplot (Venn diagrams)
* package stringproc: new functions flush_output, readbyte, and writebyte

Changes in core:
----------------

* function gf_symmetric renamed to gf_balanced


Changes in share:
--------------

* functions md5sum, sha1sum, sha256sum and base64_decode: accept and return numbers and octet lists as well as strings
* packages aes and aes2: provide flexible support for different data types, e.g. octet lists


Bug fixes:
----------

* [#3005]: Manual is wrong about "sqrt" and "radexpand"
* [#2998]: extra () in display2d:false output
* [#2988]: documentation error in gf_manual.pdf
* [#2987]: Some divergent integrals give error, some don't
* [#2982]: Display of taylor series in wrong order
* [#2980]: "rectform" causes infinite recursion depending on variable name
* [#2975]: number of distinct partitions gives wroing result
* [#2972]: Wrong limits involving logs
* [#2937]: dotscrules and antisymmetric
* [#2936]: stack overflow in integrate
* [#2934]: dotscrules and antisymmetric
* [#2929]: misformatting in debugger help message
* [#2905]: Assigning variable twice yields different results
* [#2620]: atan2(y,x)+atan2(-y,x) doesnt always return 0
* [#2230]: abs(x)^(2*int) doesn't simplify
* [#2211]: rtest_sign #77
* [#2183]: eigenvectors of a 10 x 10
* [#1193]: ev doesn't bind functions safely

Unnumbered bugs:
----------------

* commit [6779ac0]: zn-nrt: root of zero should be zero
* commit [b212487]: Fix up version variables so that load(drawutils) succeeds
* mailing list 2015-08-29: [Documentation fails with error][1]
* mailing list 2015-08-27: [Warnings from loading cartan package][2]
* mailing list 2015-08-25: [Strange symmetry of acoth(x), area cotangens hyperbolicus function (#552)][3]
* mailing list 2015-08-17: [trouble with GCL build][4]
* mailing list 2015-06-11: [rationalize(0.1) and the manual][5]

[1]: https://sourceforge.net/p/maxima/mailman/message/34417174/
[2]: https://sourceforge.net/p/maxima/mailman/message/34411188/
[3]: https://sourceforge.net/p/maxima/mailman/message/34401610/
[4]: https://sourceforge.net/p/maxima/mailman/message/34369023/
[5]: https://sourceforge.net/p/maxima/mailman/message/34196346/
2015-10-01 18:43:27 +00:00
ryoon
7729271b67 Update to 1.8.3
Changelog:
Not available.
2015-09-29 14:51:18 +00:00
taca
676fe719ac Update HOMEPAGE.
Avoid using rubyforge.org since it stopped most of services.
2015-09-26 15:07:42 +00:00
joerg
134aca15e1 Don't force mpi-ch, openmpi works just as well. Don't force manual
libraries when already using the mpicc wrapper.
2015-09-23 12:00:11 +00:00
tnn
2f62cf5cb0 installs headers, so should have a bl3.mk 2015-09-23 03:57:32 +00:00
joerg
3a34460abd Don't clean intermediate files after checksum/patch phase.
The work directories are almost empty, so it doesn't save much space.
It makes debugging annoying and it breaks local DISTDIR settings.
2015-09-15 20:56:33 +00:00
joerg
92c55890c4 Restore package name, lack of hyphen 2015-09-15 08:22:39 +00:00
taca
57beec1297 Update ruby-spreadsheet to 1.0.5.
### 1.0.5 / 01.09.2015

Author: kunashir <kunashir@list.ru>
Date:   Tue Sep 1 13:12:49 2015 +0300

* add format for nubmer with out #

### 1.0.4 / 18.07.2015

Author: Edmund Mai <edmundm@crowdtap.com>
Date:   Fri Jul 17 15:32:47 2015 -0400

* Fixes slow Spreadsheet.open response in console
2015-09-13 15:50:27 +00:00
taca
1713ef934a Update ruby-gsl to 1.16.0.6.
== Thu Jul 03 2015
* Ruby/GSL 1.16.0.6
  * rb-gsl and gsl are now the same gem

== Thu Jul 02 2015
* Ruby/GSL 1.16.0.5
  * Optional narray support
  * Drop Ruby 1.8 support
  * Drop support for GSL < 1.15
2015-09-13 14:37:10 +00:00
jperkin
a4bf0dbfef Use install_name_tool to fix up Darwin library names. Fixes check-shlib. 2015-09-11 13:16:16 +00:00
dbj
4f57f0ec99 add Darwin specific files that are new with the verison upgrade 2015-09-01 06:14:36 +00:00
wiz
4b3707e501 Update to 5.37.0: changes not found. 2015-08-30 15:57:11 +00:00
taca
247f600e81 Update pear-Numbers_Words to 0.18.1.
0.18.1:
* Fixed bug #20435: Missing files in PEAR archive [kouber]
* Fixed French plural handling for "million" and suffixes above [Olivier Brunel]
2015-08-30 09:00:25 +00:00
taca
2496839a78 Update pear-Math_BigInteger to 1.0.2.
pkgsrc change: LICESE has changed to mit.

1,0.2:
- (internal, bcmath) use OpenSSL, if available, for modular exponentiation
- (internal) use 64-bit ints, if available, and 64-bit floats, otherwise
- (all) improve random number generation
- change license to less restrictive MIT license
1.0.1:

- (internal, bcmath) use OpenSSL, if available, for modular exponentiation
- (internal) use 64-bit ints, if available, and 64-bit floats, otherwise
- (all) improve random number generation
- change license to less restrictive MIT license
2015-08-30 08:59:04 +00:00
joerg
24120740c4 If you want eukleides10 to be picked up, you should also place an upper
limit. Drop redundant PKGNAME.
2015-08-29 23:01:29 +00:00
richard
992efc35cf Add py-simpleeval
A quick single-file MIT-Licenced library for easily adding evaluatable
expressions into python projects. Say you want to allow a user to set an alarm
volume, which could depend on the time of day, alarm level, how many previous
alarms had gone off, and if there is music playing at the time.

Or if you want to allow simple formulae in a web application, but don't want
to give full eval() access, or don't want to run in javascript on the client side.

It's deliberately very simple, just a single file you can dump into a project,
or import from pypi (pip or easy_install).

Internally, it's using the amazing python ast module to parse the expression,
which allows very fine control of what is and isn't allowed. It should be
completely safe in terms of what operations can be performed by the expression.

The only issue I know to be aware of is that you can create an expression which
takes a long time to evaluate, or which evaluating requires an awful lot of
memory, which leaves the potential for DOS attacks. There is basic protection
against this, and you can lock it down further if you desire.

You should be aware of this when deploying in a public setting.

The defaults are pretty locked down and basic, and it's very easy to add whatever
extra specific functionality you need (your own functions, variable/name lookup, etc).
2015-08-25 05:05:39 +00:00
wiz
c7383780db Bump all packages that depend on curses.bui* or terminfo.bui* since they
might incur ncurses dependencies on some platforms, and ncurses just bumped
its shlib.
Some packages were bumped twice now, sorry for that.
2015-08-18 07:31:00 +00:00
wiz
0eb141f110 Bump PKGREVISION for ncurses shlib bump. 2015-08-17 17:11:19 +00:00
wen
32c356e337 Update to 3.2.2
Upstream changes:
CHANGES IN R 3.2.2:

  SIGNIFICANT USER-VISIBLE CHANGES:

    * It is now easier to use secure downloads from https:// URLs on
      builds which support them: no longer do non-default options need
      to be selected to do so.  In particular, packages can be
      installed from repositories which offer https:// URLs, and those
      listed by setRepositories() now do so (for some of their
      mirrors).

      Support for https:// URLs is available on Windows, and on other
      platforms if support for libcurl was compiled in and if that
      supports the https protocol (system installations can be expected
      to do).  So https:// support can be expected except on rather old
      OSes (an example being OS X 'Snow Leopard', where a non-system
      version of libcurl can be used).

      (Windows only) The default method for accessing URLs _via_
      download.file() and url() has been changed to be "wininet" using
      Windows API calls.  This changes the way proxies need to be set
      and security settings made: there have been some reports of sites
      being inaccessible under the new default method (but the previous
      methods remain available).

  NEW FEATURES:

    * cmdscale() gets new option list. for increased flexibility when a
      list should be returned.

    * configure now supports texinfo version 6.0, which (unlike the
      change from 4.x to 5.0) is a minor update.  (Wish of PR#16456.)

    * (Non-Windows only) download.file() with default method = "auto"
      now chooses "libcurl" if that is available and a https:// or
      ftps:// URL is used.

    * (Windows only) setInternet2(TRUE) is now the default.  The
      command-line option --internet2 and environment variable
      R_WIN_INTERNET2 are now ignored.

      Thus by default the "internal" method for download.file() and
      url() uses the "wininet" method: to revert to the previous
      default use setInternet2(FALSE).

      This means that https:// can be read by default by
      download.file() (they have been readable by file() and url()
      since R 3.2.0).

      There are implications for how proxies need to be set (see
      ?download.file): also, cacheOK = FALSE is not supported.

    * chooseCRANmirror() and chooseBioCmirror() now offer HTTPS mirrors
      in preference to HTTP mirrors.  This changes the interpretation
      of their ind arguments: see their help pages.

    * capture.output() gets optional arguments type and split to pass
      to sink(), and hence can be used to capture messages.

  C-LEVEL FACILITIES:

    * Header Rconfig.h now defines HAVE_ALLOCA_H if the platform has
      the alloca.h header (it is needed to define alloca on Solaris and
      AIX, at least: see 'Writing R Extensions' for how to use it).

  INSTALLATION and INCLUDED SOFTWARE:

    * The libtool script generated by configure has been modified to
      support FreeBSD >= 10 (PR#16410).

  BUG FIXES:

    * The HTML help page links to demo code failed due to a change in R
      3.2.0.  (PR#16432)

    * If the na.action argument was used in model.frame(), the original
      data could be modified. (PR#16436)

    * getGraphicsEvent() could cause a crash if a graphics window was
      closed while it was in use. (PR#16438)

    * matrix(x, nr, nc, byrow = TRUE) failed if x was an object of type
      "expression".

    * strptime() could overflow the allocated storage on the C stack
      when the timezone had a non-standard format much longer than the
      standard formats. (Part of PR#16328.)

    * options(OutDec = s) now signals a warning (which will become an
      error in the future) when s is not a string with exactly one
      character, as that has been a documented requirement.

    * prettyNum() gains a new option input.d.mark which together with
      other changes, e.g., the default for decimal.mark, fixes some
      format()ting variants with non-default getOption("OutDec") such
      as in PR#16411.

    * download.packages() failed for type equal to either "both" or
      "binary".  (Reported by Dan Tenenbaum.)

    * The dendrogram method of labels() is much more efficient for
      large dendrograms, now using rapply().  (Comment #15 of PR#15215)

    * The "port" algorithm of nls() could give spurious errors.
      (Reported by Radford Neal.)

    * Reference classes that inherited from reference classes in
      another package could invalidate methods of the inherited class.
      Fixing this requires adding the ability for methods to be
      "external", with the object supplied explicitly as the first
      argument, named .self. See "Inter-Package Superclasses" in the
      documentation.

    * readBin() could fail on the SPARC architecture due to alignment
      issues.  (Reported by Radford Neal.)

    * qt(*, df=Inf, ncp=.) now uses the natural qnorm() limit instead
      of returning NaN. (PR#16475)

    * Auto-printing of S3 and S4 values now searches for print() in the
      base namespace and show() in the methods namespace instead of
      searching the global environment.

    * polym() gains a coefs = NULL argument and returns class "poly"
      just like poly() which gets a new simple=FALSE option.  They now
      lead to correct predict()ions, e.g., on subsets of the original
      data.

    * rhyper(nn, <large>) now works correctly. (PR#16489)

    * ttkimage() did not (and could not) work so was removed. Ditto for
      tkimage.cget() and tkimage.configure(). Added two Ttk widgets and
      missing subcommands for Tk's image command: ttkscale(),
      ttkspinbox(), tkimage.delete(), tkimage.height(),
      tkimage.inuse(), tkimage.type(), tkimage.types(),
      tkimage.width(). (PR#15372, PR#16450)

    * getClass("foo") now also returns a class definition when it is
      found in the cache more than once.
2015-08-14 12:40:19 +00:00
he
96ca790332 Update gnumeric to version 1.12.23.
Pkgsrc changes:
 * Adjust PLIST.
 * Bump version number.
 * Depend on newer version of goffice0.10.

Upstream changes:

gnumeric 1.12.23:

Noteworthy news in this release:
  * Fuzzed file hardening.
  * Solver refactoring.

Special thanks to Juha Kylmänen from Oulu University Secure
Programming Group for running a large amount of fuzzing against
Gnumeric.

gnumeric 1.12.22:

Noteworthy news in this release:
  * Graph fixes and improvements.
  * Test suite improvements.
  * ODF/XLSX import and export fixes.
  * A schema for the ODF files we produce.

As part of our testing we check that the ODF, XLSX, and Gnumeric
files we produce are valid according to the relevant xml schema.
  * For Gnumeric files we provide the schema.
  * For XLSX there is an official schema which we use with a few
    fixes so Excel can read our files. (We consider the format to
    be defined by what XLSX writes.)
  * For ODS the situation is more problematic. We appear to be the
    first to release a schema for the ODS files we produce. That
    is mildly shocking -- several spreadsheets have ODS as their
    primary format, yet no-one seem to be validating the files they
    produce! There is an official schema for the format without
    extensions which is fine, except that no-one uses that format
    because there are lots of fairly basic things that cannot be
    expressed in the format without extensions.
2015-08-13 15:14:29 +00:00
asau
f63d4a0663 Update to FriCAS 1.2.6
Changse 1.2.6:

- Eigenvalues can be computed over larger range of base fields.
- Common denomiantor package handles now multivariate polynomials.
- More uniform break (error) handling.

Bug fixes, in particular:

- 'distribute' handles 'box' operator.
- Fixed problem with guessing over multivariate polynomilas.
- Fixed hashcode handling for Void in Aldor.
2015-08-12 08:50:37 +00:00
dholland
6fddfeb799 PR 45271 Joern Clausen: remove old Solaris PIC-related substitution
that nowadays breaks the build.
2015-08-10 08:23:48 +00:00
asau
34274ca02f Update to FriCAS 1.2.5
Changes in FriCAS 1.2.5:

- Fixed printing of scripted symbols.
- Fixed 'totalDegreeSorted' (affected Groebner bases).
- Fixed few problems with Hensel lifting (including SF bug 47).
- Fixed 'series' in UnivariateLaurentSeriesConstructor.
- Fixed 'order' in SparseUnivariatePowerSeries.
- Printing of series now respect 'showall' setting, cyclic
  series are detected.
- Fixed problem with interpreter preferring Union to base type.


Changes in FriCAS 1.2.4:

- New cylindrical decomposition package.
- New GnuDraw package for plotting via gnuplot.
- Texmacs interface now handles Cork symbols.
- Added double precision versions of several special functions
      (needed for plotting).
- Nopile mode for Spad is changed to be more convenient.
- 'stringMatch' is removed (was broken beyond repair).

Bug fixes, in particular:

- Fixed intepreter assignment to parts of nested aggregates
      (issue 376).
- Fixed interpreter coercion from Equation to Boolean (issue 359).
- Fix printing of '\%i' in types (issue 132).
- Disabled incorrect shortcut during coercion (issue 29).
- Difference of intervals now agrees with definition as interval
      operation.
- Avoid overwriting loop limit and increment.
- Fix a polynomial gcd failure due to bad reduction.
- Avoid mangling unevaluated algebraic integrals.
- Fix integration of unevaluated derivatives.
- Restore parser handling of '\\/' and '/\\'.
- Properly escape strings and symbols in TeXFormat.


Changes in FriCAS 1.2.3:

- Fixed pattern matching using '%i' in patterns.
- Fixed ')display op coerce'.
- Fixed ')version' command.
- Fixed crash when printing '%'.
- Fix a buffer overflow in HyperDoc.
- Fixed HyperDoc errors in 'Dependants' and 'Users'.
- HyperDoc browser better handles constructors with parameters.


Changes in FriCAS 1.2.2:

- Improvements to 'integrate': better handling of algebraic
  integrals, new routine which handles some integrals contaning
  'lambertW'.
- Improvements to 'limit', now Gruntz algorithm knows about
  a few tractable functions.
- Smith form of sparse integer matrices is now much more
  efficient.
- Generalized indexing for two dimensional arrays.
- Pile/nopile mode is now restored after ')read' or ')compile'.
  Piling rules now accept some forms of multiline lists.
- Eliminated version checking in generated code. Note: this
  change means that Spad code compiled by earlier FriCAS versions
  will not run in FriCAS 1.2.2.
- Updated Aldor interface to work with free Aldor.

Bug fixes, in particular:

- Interpreter can now handle complicated mutually recursive
  functions.
- Spad compiler should now correctly handle 'has' inside a function.
- Fixed derivatives of Whittaker functions.


Changes in FriCAS 1.2.1:

-- Support for building Mac OS application bundle.

Bug fixes, in particular:

-- fixed few cases of wrong or unevaluated integrals.
-- better zero test during limit computation avoids division
   by zero.
-- fixed buffer overflow problems in view3D.
-- 'reducedSystem' on empty input returns basis of correct size.
2015-08-10 08:13:45 +00:00
jaapb
7ea12ebae7 Recursive revbump associated with lang/ocaml update. 2015-08-07 11:20:32 +00:00
wen
c47f515082 Update to 0.3.1
Upstream changes:
# Version 0.3.1

* Actually export `dbIsValid()` :/

* `dbGetQuery()` uses `dbFetch()` in the default implementation.

# Version 0.3.0

## New and enhanced generics

* `dbIsValid()` returns a logical value describing whether a connection or
  result set (or other object) is still valid. (#12).

* `dbQuoteString()` and `dbQuoteIdentifier()` to implement database specific
  quoting mechanisms.

* `dbFetch()` added as alias to `fetch()` to provide consistent name.
  Implementers should define methods for both `fetch()` and `dbFetch()` until
  `fetch()` is deprecated in 2015. For now, the default method for `dbFetch()`
  calls `fetch()`.

* `dbBegin()` begins a transaction (#17). If not supported, DB specific
  methods should throw an error (as should `dbCommit()` and `dbRollback()`).

## New default methods

* `dbGetStatement()`, `dbGetRowsAffected()`, `dbHasCompleted()`, and
  `dbGetRowCount()` gain default methods that extract the appropriate elements
  from `dbGetInfo()`. This means that most drivers should no longer need to
  implement these methods (#13).

* `dbGetQuery()` gains a default method for `DBIConnection` which uses
  `dbSendQuery()`, `fetch()` and `dbClearResult()`.

## Deprecated features

* The following functions are soft-deprecated. They are going away,
  and developers who use the DBI should begin preparing. The formal deprecation
  process will begin in July 2015, where these function will emit warnings
  on use.

    * `fetch()` is replaced by `dbFetch()`.

    * `make.db.names()`, `isSQLKeyword()` and `SQLKeywords()`: a black list
      based approach is fundamentally flawed; instead quote strings and
      identifiers with `dbQuoteIdentifier()` and `dbQuoteString()`.

* `dbGetDBIVersion()` is deprecated since it's now just a thin wrapper
  around `packageVersion("DBI")`.

* `dbSetDataMappings()` (#9) and `dbCallProc()` (#7) are deprecated as no
  implementations were ever provided.

## Other improvements

* `dbiCheckCompliance()` makes it easier for implementors to check that their
  package is in compliance with the DBI specification.

* All examples now use the RSQLite package so that you can easily try out
  the code samples (#4).

* `dbDriver()` gains a more effective search mechanism that doesn't rely on
  packages being loaded (#1).

* DBI has been converted to use roxygen2 for documentation, and now most
  functions have their own documentation files. I would love your feedback
  on how we could make the documentation better!
2015-08-07 01:41:38 +00:00
wen
ec574a7485 add p5-Math-Base-Convert 2015-08-06 01:35:25 +00:00
wen
e9bb29b9bb Import Math-Base-Convert-0.08 as math/p5-Math-Base-Convert.
This module provides fast functions and methods to convert between arbitrary
number bases from 2 (binary) thru 65535.

This module is pure Perl, has no external dependencies, and is backward
compatible with old versions of Perl 5.
2015-08-06 01:32:11 +00:00
he
020615702b Point out when the latest update was, and that there's a newer
version in gnumeric112 (and gnumeric110 for gnumeric).
2015-08-05 21:41:38 +00:00
he
49b6c9c0c1 Update to version 1.12.21.
Pkgsrc changes:
 * Modify license to dual either gpl2 or gpl3.
 * Adjust BUILDLINK_API_DEPENDS settings from configure.ac.
 * Adjust PLIST to files now installed.
 * Add comments to the existing patches.

Upstream notable changes (see ChangeLog in source for details):
gnumeric 1.12.21:
   * ODS import/export fixes
   * XLSX import/export fixes

gnumeric 1.12.20:
   * ODF import/export fixes and enhancements.
   * XLSX import/export fixes and enhancements.

gnumeric 1.12.19:
   * (no noteworthy major changes)

gnumeric 1.12.18:
   * Workaround gtk+ api/abi breaks.

gnumeric 1.12.17:
   * xlsx import/export improvements.

gnumeric 1.12.16:
   * ODS import/export improvements

gnumeric 1.12.15:
   * ods/xlsx graph import fixes
   * ods import/export fixes

gnumeric 1.12.14:
   * Many fixes related to conditional formats.
   * Try to disable Ubuntu's non-working scroll bars.

gnumeric 1.12.13:
   * ods import/export export fixes.
   * xls import/export export fixes.

gnumeric 1.12.12:
   * Test suite improvements.
   * ods import/export improvements
   * xls import/export improvements
   * xlsx import/export improvements

gnumeric 1.12.11:
   * A problem with saving to Excel97 format was fixed.

gnumeric 1.12.10:
   * Accuracy improvements
   * Work around gtk+ abi breaks
   * Win32 improvements
2015-08-05 21:34:17 +00:00
ryoon
cfce3da964 Update to 5.36.1
* Use gmake to fix build.

Changelog:

Changes in Release 5.36.1
This is a bug-fix minor release. To see the changes in the major release
5.36, read the Maxima 5.36 change log

Bugs fixed
    Bug 2936: Stack overflow in integrate.
    Bugs in the draw package.
    Problem in loading wxm files from the Explorer in Wxmaxima.


Maxima 5.36 change log
New items in core:
    function parse_timedate: parse time/date string

New items in share:
    function lll: Lenstra-Lenstra-Lovasz algorithm

Changes in core:
    at: remove variables in simplification

Other changes:
    package contrib_ode: update test suite
    package ezunits: additional femto, pico, nano, and micro fractions
    package ezunits: apply rules more aggressively
    package maxima-odesolve: documentation
    package gentran: update
    package draw: geometric transformations for 2D implicit functions
    package coma: new version
    package maximaMathML: hook mechanism
    package noninteractive: new script expand_branches.mac

Bug fixes:
    [#2924]: Maxima fails to run on lisp interpreters
    [#2922]: input '20log(x)' causes strange error
    [#2919]: Definite integration broken: integrate(1/(x^2), x, -inf, inf) gives zero
    [#2913]: trigrat crashes with variable name "e"
    [#2907]: ratsubst(z, sin(x + 1), 0) crashes when radsubstflag = true
    [#2898]: limit of continuous --> und
    [#2892]: julia() and mandelbrot() creates maxout.gnuplot in different place than plot2d()/plot3d()
    [#2883]: load (lsquares); Error
    [#2881]: quad_qags recently got problems evaluating erf
    [#2878]: Installing from maxima-5.35.1.tar.gz requires Makeinfo
    [#2873]: implicit_plot does not accept symbolic ranges
    [#2865]: Use exp as a list
    [#2862]: Incorrect result for integrate(u/(u+1)^2,u,0,inf);
    [#2854]: Integral hangs with domain:complex
    [#2853]: abs_integrate hangs after encountering log(0)

Unnumbered bugs:
    mailing list 2015-03-16: Requesting advice on simplification rules for user-defined operators
    mailing list 2015-02-09: save(..) can't save syntax extensions in a readable form
    mailing list 2015-02-16: expand phenomenon
    mailing list 2015-02-08: Newbie lisp question
    mailing list 2015-01-22: Matrix inversion with detout = true?
    mailing list 2015-01-09: Problem loading package COMA
    mailing list 2015-01-05: order of operands is changed due to source information
    commit [b0a9ab]: Fix jacobi_sc(elliptic_kc(m)/2,m)
    commit [ff92d9]: Fix make_elliptic_f for inverse_jacobi_ns and inverse_jacobi_nc
    commit [b7dc04]: Added device info to paths in cl-info::*info-tables*
    commit [95c186]: Fixes a bug in the style option parser
    commit [bf9a67]: Correct the derivative of bessel_y wrt order: diff(bessel_y(v,z),v)
    commit [0d8d8a]: Handle the (finite) geometric sums with quotient 1.
    commit [b3cffd]: Fix bug controlling non numeric symbols in explicit
    commit [114860]: Add device to maxima-load-pathname-directory.
    commit [72d617]: Fix maxima -s PORT command.


Maxima 5.35 change log

   New items in core:
 * in evaluation, allow general expressions as operators

   New items in share:
 * package Eulix: numerical solution of ordinary differential equations
 * script hermite_reduce.mac: implement Rothstein-Trager algorithm

   Changes in core:
 * function supcontext: evaluate argument(s)
 * functions supcontext, newcontext: return made-up name if none supplied
 * function powerseries: bug fixes

   Other changes:
 * many updates to documentation

   Bug fixes:
   #2847: limits of powers of constants
   #2845: Avoid initialization-time compile in commac.lisp
   #2818: Problem with trigreduce
   #2816: Significant reduction in processing LaTeX output in imaxima in new version
   #2815: abs_integrate leads to infinite recursion
   #2814: abs_integrate: integration of x*ceiling(x)
   #2800: a typo in mode_identity documentation
   #2774: desolve doesn't know how to interpret temporary variables
   #2623: shortest_path
   #2575: Integration error: integrate(sqrt(k-k*cos(2*x)), x)
   #2371: limit((exp(a*x)-1)/(exp(a*x)+1),x,inf) fails

   unnumbered bugs:
   mailing list 2014-11-26: Error in histogram and continuous_freq
   mailing list 2014-09-01: SIGN1 strangeness, was: Problem with bfloat


Maxima 5.34 change log
   New items in core:
 * function invert_by_gausselim: invert by Gaussian elimination (used to be function invertmx)
 * function invert_by_adjoint: invert by adjoint method (used to be function invert)
 * functions push, pop: now implemented in core

   New items in share:
 * package coma: functions for control engineering
 * function sha1sum (package stringproc): compute SHA1 hash
 * engineering-format.lisp: change default float display format

   Changes in core:
 * function invert: use adjoint method or Gaussian elimination depending on size of matrix
 * function tex: Define TeX properties for gamma_incomplete and friends

   Bug fixes:
 #2785: dynamics package: plotting fails on evolution() and other functions
 #2784: Ceiling gives error, without even an error message
 #2782: realroots(x*y) internal error
 #2776: Error when integrate sqrt
 #2775: powerseries of some log expressions
 #2772: powerseries of some trig expressions
 #2768: "notequal" tries to put multiprecision rational numbers into floats
 #2765: powerseries of a derivative
 #2764: power series of 1 + x^n and regression tests in rtest16.mac
 #2763: symmetricp(matrix) DOEs not work
 #2760: powerseries at infinty broken
 #2755: powerseries of natural exponential
 #2751: powerseries of bessel functions needlessly fail
 #2750: powerseries(x^x,x,0) gives Lisp error
 #2749: Float evaluation of sinh causes Lisp error instead of overflowing to bigfloat
 #2746: scifac / gcfac crash
 #2745: limit with numer:true
 #2741: imaxima preamble broken for display in emacs
 #2738: Integrate encountered a Lisp error: The value 2 is not of type LIST
 #2732: wrong answer for similar to gaussian integral
 #2726: integrate produces wrong answer for Gaussian Moments
 #2725: pochhammer(n,x) documentation
 #2721: maxima can't refresh plots in gnuplot_pipes format
 #2719: Matrix invert() behaviour
 #2718: imaxima LaTeX definitions conflict with amsmath
 #2717: plot2d treats linear and log plots inconsistently
 #2716: is allows more than one argument
 #2711: `i' is not local in `geosum'
 #2710: `rempart' from package `functs' fails
 #2707: `rowp' fails if `p' function is defined
 #2697: Inconsistent handling of Greek symbols
 #2683: Plot2d default terminal broken
 #2678: transform_xy rejects argument constructed with make_transform
 #2677: [gnuplot_pm3d,false] does not disable pm3d
 #2621: "gamma limit error"
 #2526: abs_integrate fails on integrate(sqrt(x + sqrt(x)), x)

   unnumbered bugs:
 mailing list 2014-08-16: bind stack overflow in loop
 mailing list 2014-07-01: "rtest8.mac test failure"
 mailing list 2014-06-29: "rule issue"
 limit((atan(x)-(%pi/2))/(sin(10/x)),x,inf)
 ezgcd(p1,p2,...) => true when ratp returns true for any argument


Maxima 5.33 change log
   New items in share:
 * package alt-display: hook for nonstandard display functions
 * package kovacicODE: Kovacic method for ordinary differential equations
 * package odes: several methods for ordinary differential equations
 * package trigtools: manipulating trigonometric function expressions
 * package sound: functions for audio synthesis

   Changes in core:
 * promote result to bigfloat on floating point overflow
 * variables declared to be irrational are considered real
 * display floats with leading "0." instead of "." only
 * function tex: accepts Lisp objects now
 * functions expintegral_shi, expintegral_chi: limits
 * functions hankel_1, hankel_2: numerically evaluate when the order is complex
 * function declare: rational and irrational properties mutually exclusive
 * functions get, put: when first argument is a string, assume it is the name of an operator
 * functions round, truncate: handle arguments of zeroa and zerob
 * functions for Galois fields: improve power tables and introduce nth root
 * operator @: TeX property

   Other changes:
 * package ezunits: TeX property for units conversion operator
 * package maximaMathML: some updates
 * package draw: support for gnuplot terminal canvas
 * documentation: updating Brazilian Portuguese translation of user manual

   Bug fixes:
 * 2703: plotting option legend causes an error
 * 2702: plotting option adapt_depth causes an error
 * 2701: plotting option logy causes an error
 * 2700: plot option psfile causes an error
 * 2699: nticks seems ignored
 * 2696: *prompt-prefix* and *prompt-suffix* not inserted for askinteger / asksign
 * 2695: kill kills built-in properties of operator after user-defined property
 * 2687: call-arguments-limit easily exhaustable in tex1
 * 2682: Function zeta fails numerically for large numbers that aren't even integers
 * 2681: solve_rec wrong result
 * 2676: integral incorrect when variable is subscripted
 * 2675: maxima will not do the simplest of definite integrals and will not factor otherwise
 * 2671: Since 4833b5 Maxima (with ECL at least) outputs palette numbers gnuplot

 unnumbered bugs:
 * bug in gnuplot_term option
 * bug in starplot
 * bug in ratinterpol
 * %e^^A should not simplify to %e^A
 * %pi is now correctly rounded with high probability
 * embedded plotting bug in XMaxima
 * bug in single-label case for plotting option 'label'
 * bug in comment indentation in Emacs
 * $CONS and friends should treat lists the same as other expressions
 * mailing list 2014-02-27: "assigning to a list of structure fields does not work"
2015-08-05 13:08:22 +00:00
szptvlfn
4b41cd6f8b Bump PKGREVISION for hs-text-1.2.1.3 2015-08-02 11:27:04 +00:00
szptvlfn
43dce68cfa Bump PKGREVISION for hs-unordered-containers-0.2.5.1 2015-07-25 21:59:57 +00:00
bad
04d01e10c0 Update py-pandas to 0.16.2.
Closes PR pkg/49958 by matthewd.

Changes since 0.14.1 for a full list see
http://pandas.pydata.org/pandas-docs/stable/whatsnew.html:

v 0.16.2

This is a minor bug-fix release from 0.16.1 and includes a a large
number of bug fixes along some new features (pipe() method),
enhancements, and performance improvements.

We recommend that all users upgrade to this version.

Highlights include:

    A new pipe method
    Documentation on how to use numba with pandas,

v 0.16.1
This is a minor bug-fix release from 0.16.0 and includes a a large
number of bug fixes along several new features, enhancements, and
performance improvements. We recommend that all users upgrade to this
version.

Highlights include:

    Support for a CategoricalIndex, a category based index
    New section on how-to-contribute to pandas
    Revised “Merge, join, and concatenate” documentation, including
    graphical examples to make it easier to understand each operations
    New method sample for drawing random samples from Series, DataFrames
    and Panels.
    The default Index printing has changed to a more uniform format
    BusinessHour datetime-offset is now supported
    Further enhancement to the .str accessor to make string operations easier

v0.16.0 (March 22, 2015)

This is a major release from 0.15.2 and includes a small number of
API changes, several new features, enhancements, and performance
improvements along with a large number of bug fixes. We recommend that
all users upgrade to this version.

Highlights include:

    DataFrame.assign method
    Series.to_coo/from_coo methods to interact with scipy.sparse
    Backwards incompatible change to Timedelta to conform the .seconds
    attribute with datetime.timedelta
    Changes to the .loc slicing API to conform with the behavior of .ix
    Changes to the default for ordering in the Categorical constructor
    Enhancement to the .str accessor to make string operations easier
    The pandas.tools.rplot, pandas.sandbox.qtpandas and pandas.rpy
    modules are deprecated. We refer users to external packages like
    seaborn, pandas-qt and rpy2 for similar or equivalent functionality,
    see here
v0.15.0 (October 18, 2014)

This is a major release from 0.14.1 and includes a small number of
API changes, several new features, enhancements, and performance
improvements along with a large number of bug fixes. We recommend that
all users upgrade to this version.

Warning

pandas >= 0.15.0 will no longer support compatibility with NumPy
versions < 1.7.0. If you want to use the latest versions of pandas,
please upgrade to NumPy >= 1.7.0 (GH7711)

    Highlights include:
        The Categorical type was integrated as a first-class pandas type
        New scalar type Timedelta, and a new index type TimedeltaIndex
        New datetimelike properties accessor .dt for Series, see
        Datetimelike Properties
        New DataFrame default display for df.info() to include memory
        usage, see Memory Usage
        read_csv will now by default ignore blank lines when parsing
        API change in using Indexes in set operations
        Enhancements in the handling of timezones
        A lot of improvements to the rolling and expanding moment funtions
        Internal refactoring of the Index class to no longer sub-class
        ndarray, see Internal Refactoring
        dropping support for PyTables less than version 3.0.0, and
        numexpr less than version 2.1 (GH7990)
        Split indexing documentation into Indexing and Selecting Data
        and MultiIndex / Advanced Indexing
        Split out string methods documentation into Working with Text Data
2015-07-21 19:44:45 +00:00
wiz
40bbad7ac6 Comment out dependencies of the style
{perl>=5.16.6,p5-ExtUtils-ParseXS>=3.15}:../../devel/p5-ExtUtils-ParseXS
since pkgsrc enforces the newest perl version anyway, so they
should always pick perl, but sometimes (pkg_add) don't due to the
design of the {,} syntax.

No effective change for the above reason.

Ok joerg
2015-07-12 18:56:06 +00:00
wen
2afc7db360 Update to 1.706
Upstream changes:
1.706     2015-03-22 12:27:08-04:00 America/New_York
        - do not allow offsets with inverted/broken offset values

1.705     2014-11-16 13:59:01-05:00 America/New_York
        - correct reversed-order of parameters in documentation for
          Test::Tolerant

1.704     2014-10-30 23:11:41-04:00 America/New_York
        - do not rely on feature.pm -- that was an accident

1.703     2014-02-01 19:31:40-05:00 America/New_York
        - overload tolerances for ~~ operator (thanks, Smylers!)

1.702     2013-10-07 10:22:17 America/New_York
          update bugtracker

          avoid circular loading problems (with a nasty hack)

          fix spelling error; thanks, Alexandre Mestiashvili!
2015-07-12 03:26:17 +00:00
joerg
11d2712a27 Remove USE_X11BASE and X11PREFIX. 2015-07-04 16:18:28 +00:00
joerg
6316eed6ef Fix texinfo version check. 2015-07-03 12:45:03 +00:00
jaapb
487d6ab2d3 Recursive revbump associated with update of lang/ocaml to 4.02.2. 2015-06-30 11:52:55 +00:00
ryoon
f1ea8f6c0d Update to 3.1.3
Changelog:
Changes from version 3.1.2 to version 3.1.3:
- Better support for Automake 1.13+ (now used to generate the tarball).
- Improved MPFR manual.
- Bug fixes (see <http://www.mpfr.org/mpfr-3.1.2/#fixed> and ChangeLog file).
2015-06-30 10:25:01 +00:00
wen
f5384c7e40 Update to 1.3.4
Upstream changes:
2014-10-16, version 1.3.4
=========================

Implementation changes
----------------------

* Fix input of huge floats.

Other changes
-------------

* Support the AArch64 and the Mips64 ABIs.


2013-07-21, version 1.3.3
=========================

Implementation changes
----------------------

* Fix integer input of leading zeros in power-of-two base.

* Fix several floating-poing conversion bugs involving huge numbers.

* Fix bug that would set input stream fail state when reading a number at EOF.

Other changes
-------------

* Support the x32 ABI.
2015-06-30 07:56:44 +00:00
wen
ba35b29dee Update to 3.2.1
Upstream changes:
CHANGES IN R 3.2.1
NEW FEATURES

    utf8ToInt() now checks that its input is valid UTF-8 and returns NA if it is not.

    install.packages() now allows type = "both" with repos = NULL if it can infer the type of file.

    nchar(x, *) and nzchar(x) gain a new argument keepNA which governs how the result for NAs in x is determined. For the R 3.2.x series, the default remains FALSE which is fully back compatible. From R 3.3.0, the default will change to keepNA = NA and you are advised to consider this for code portability.

    news() more flexibly extracts dates from package ‘NEWS.Rd’ files.

    lengths(x) now also works (trivially) for atomic x and hence can be used more generally as an efficient replacement of sapply(x, length) and similar.

    The included version of PCRE has been updated to 8.37, a bug-fix release.

    diag() no longer duplicates a matrix when extracting its diagonal.

    as.character.srcref() gains an argument to allow characters corresponding to a range of source references to be extracted.

BUG FIXES

    acf() and ccf() now guarantee values strictly in [-1,1] (instead of sometimes very slightly outside). PR#15832.

    as.integer("111111111111") now gives NA (with a warning) as it does for the corresponding numeric or negative number coercions. Further, as.integer(M + 0.1) now gives M (instead of NA) when M is the maximal representable integer.

    On some platforms nchar(x, "c") and nchar(x, "w") would return values (possibly NA) for inputs which were declared to be UTF-8 but were not, or for invalid strings without a marked encoding in a multi-byte locale, rather than give an error. Additional checks have been added to mitigate this.

    apply(a, M, function(u) c(X = ., Y = .)) again has dimnames containing "X" and "Y" (as in R < 3.2.0).

    (Windows only) In some cases, the --clean option to R CMD INSTALL could fail. (PR#16178)

    (Windows only) choose.files() would occasionally include characters from the result of an earlier call in the result of a later one. (PR#16270)

    A change in RSiteSearch() in R 3.2.0 caused it to submit invalid URLs. (PR#16329)

    Rscript and command line R silently ignored incomplete statements at the end of a script; now they are reported as parse errors. (PR#16350)

    Parse data for very long strings was not stored. (PR#16354)

    plotNode(), the workhorse of the plot method for "dendrogram"s is no longer recursive, thanks to Suharto Anggono, and hence also works for deeply nested dendrograms. (PR#15215)

    The parser could overflow internally when given numbers in scientific format with extremely large exponents. (PR#16358)

    If the CRAN mirror was not set, install.packages(type = "both") and related functions could repeatedly query the user for it. (Part of PR#16362)

    The low-level functions .rowSums() etc. did not check the length of their argument, so could segfault. (PR#16367)

    The quietly argument of library() is now correctly propagated from .getRequiredPackages2().

    Under some circumstances using the internal PCRE when building R fron source would cause external libs such as -llzma to be omitted from the main link.

    The .Primitive default methods of the logic operators, i.e., !, & and |, now give correct error messages when appropriate, e.g., for `&`(TRUE) or `!`(). (PR#16385)

    cummax(x) now correctly propagates NAs also when x is of type integer and begins with an NA.

    summaryRprof() could fail when the profile contained only two records. (PR#16395)

    HTML vignettes opened using vignette() did not support links into the rest of the HTML help system. (Links worked properly when the vignette was opened using browseVignettes() or from within the help system.)

    arima(*, xreg = .) (for d >= 1) computes estimated variances based on a the number of effective observations as in R version 3.0.1 and earlier. (PR#16278)

    slotNames(.) is now correct for "signature" objects (mostly used internally in methods).

    On some systems, the first string comparison after a locale change would result in NA.
2015-06-30 02:38:52 +00:00
markd
19cd57e227 Fix symbol visibility. 2015-06-29 21:35:04 +00:00
joerg
7d2e800fdc Needs pdftex. 2015-06-27 22:38:07 +00:00
jperkin
e20a9326dd Update the fixwrap substitution to work correctly after the recent
libtool changes.  Fixes CHECK_WRKREF builds.
2015-06-22 13:21:59 +00:00
joerg
86de81c83c tex-latex-fonts is in fonts, not in print. 2015-06-15 21:18:03 +00:00
prlw1
db51bbd11e Update gnome-calculator to 3.16.2
Overview of changes in gnome-calculator 3.16.2
    * Fix : Search provider crash introduced by 3.16.1, oops (Michael Catanzaro)

Overview of changes in gnome-calculator 3.16.1
    * Update : Translations (Translation team)
    * Fix : Search provider should discard child stdout/stderr (Michael Catanzaro)
    * Fix : Syntax error in desktop file keywords Bosnian translation (Kalev Lember)

Overview of changes in gnome-calculator 3.16.0
    * Update : Translations (Translation team)

Overview of changes in gnome-calculator 3.15.91
    * New : Remove red color from clear button (Allan Day)
    * Update : Powers page in documentation (Sebastian Rasmussen, Ekaterina Gerasimova)
    * Update : Translations (Translation team)

Overview of changes in gnome-calculator 3.15.4
    * New : Keyboard mode (Elita Lobo)
    * New : MPFR back-end (Daniel Renninghoff)
    * New : Digital Storage conversion (PioneerAxon)
    * Update : Switch to GPLv3+ license (Michael Catanzaro)
    * Update : Case-insensitive conversion units (PioneerAxon)
    * Update : Don't copy thousand separators to clipboard (PioneerAxon)
    * Update : Translations (Translation team)
    * Fix : Use HTTPS for downloading exchange rates (Michael Catanzaro)
    * Fix : Repeated entries in history view (Elita Lobo)
    * Fix : Padding in UI buttons (Trinh Anh Ngoc)
    * Fix : Style history view boarder (Trinh Anh Ngoc)
    * Fix : Sort currencies based on locale (Lubomír SedláÅ<99>)
    * Fix : Deprecated use-stock property (David King)
    * Fix : Download missing exchange rates on first launch (PioneerAxon)
    * Fix : Missing buildtime dependency (Emmanuele Bassi)
    * Fix : gtksourceview binding change (Michael Catanzaro)

Overview of changes in gnome-calculator 3.15.1
    * New : Colored buttons (Elita Lobo)
    * New : History view (Elita Lobo)
    * Update : Update to latest GtkSourceView API (Yosef Or Boczko, Evan Nemerson)
    * Update : Support upcoming Vala 0.27 (Rico Tzschichholz)
    * Update : Increase search provider timeout (Michael Catanzaro)
    * Update : Translations (Translation team)
    * Update : Miscellaneous code improvements (Arnaud Bonatti, Michael Catanzaro)
    * Fix : Misordered buttons in programming mode (Abhinav)
    * Fix : Search provider should not match plain numbers (Marcus Lundblad)
    * Fix : Spurious warnings from search provider (Michael Catanzaro)
    * Fix : Crash after thousands separator is inserted (Michael Catanzaro)
2015-06-15 01:14:23 +00:00
markd
9693e9e954 Update tex-apnum{,-doc} to 1.2 from texlive 2015
.5+.5=.1 bug fixed
2015-06-14 11:31:46 +00:00