Commit graph

8 commits

Author SHA1 Message Date
nia
4dd52433ec biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
2021-10-26 10:03:36 +00:00
nia
169fb9f0f3 biology: Remove SHA1 hashes for distfiles 2021-10-07 13:19:36 +00:00
bacon
39bd4376cd biology/biolibc: Update to 0.2.0.11
Regenerate man pages with improved auto-c2man
Improved formatting and added missing return value sections
2021-09-18 00:42:39 +00:00
bacon
dacaebd841 biology/biolibc: Update to 0.2.0.1
Fix regression: Replace BL_BED_SET_STRAND() macro with
bl_bed_set_strand(), which performs sanity checks
2021-09-03 01:53:52 +00:00
bacon
0b7391d132 biology/biolibc: Update to 0.2.0
Major API overhaul
New classes for FASTA and FASTQ
Generate accessor and mutator functions for all classes
Generate man pages for all functions and macros
Export delimiter-separated-value class to libxtend
2021-08-28 18:34:37 +00:00
bacon
e51df20828 biology/biolibc: Update to 0.1.3.2
Add LDFLAGS to allow RELRO
2021-06-15 13:47:46 +00:00
bacon
9749c03a24 biology/biolibc: Update to 0.1.3
Import sam_buff_t class and VCF functions from ad2vcf
Add BED and GFF support
Isolate headers under include/biolibc
Numerous small enhancements and fixes

Upstream change log: https://github.com/auerlab/biolibc/releases
2021-06-11 17:04:55 +00:00
bacon
d861451264 biology/biolibc: import biolibc-0.1.1
Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data.  Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications.  These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.
2021-03-24 15:20:08 +00:00