Commit graph

21 commits

Author SHA1 Message Date
wiz
67e1f1a6bf python: egg.mk: add USE_PKG_RESOURCES flag
This flag should be set for packages that import pkg_resources
and thus need setuptools after the build step.

Set this flag for packages that need it and bump PKGREVISION.
2022-01-05 15:40:56 +00:00
wiz
bb579283d0 *: bump PKGREVISION for egg.mk users
They now have a tool dependency on py-setuptools instead of a DEPENDS
2022-01-04 20:53:26 +00:00
adam
54fe3b553b Forget about Python 3.6 2021-12-30 13:05:27 +00:00
adam
14bccff530 py-netCDF4: updated to 1.5.8
version 1.5.8
* Fix Enum bug (issue 1128): the enum_dict member of an EnumType read from a file
  contains invalid values when the enum is large enough (more than 127 or 255
  members).
* Binary wheels for aarch64 and python 3.10.

version 1.5.7
* don't try to mask vlens with default  _FillValue, since vlens don't have a default _FillValue.
  This gets rid of numpy DeprecationWarning (issue 1099).
* update docs to reflect the fact that a variable must be in collective mode before writing
  compressed data to it in parallel. Added a test for this (examples/mpi_example_compressed.py).
* Fix OverflowError when dimension sizes become greater than 2**32-1 elements on Windows (Issue 1112).
* Don't return masked arrays for vlens (only for primitive and enum types
2021-12-16 09:53:28 +00:00
adam
b6d9bd86bc revbump for icu and libffi 2021-12-08 16:01:42 +00:00
wiz
498bc6900f py-netCDF4: mark as not for python 2.x
This depends on numpy which does not support python 2.x.
Not sure why this doesn't break bulk builds.
2021-12-06 15:31:28 +00:00
nia
414fc7869d math: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
2021-10-26 10:55:21 +00:00
nia
3c576fbd23 math: Remove SHA1 hashes for distfiles 2021-10-07 14:27:43 +00:00
adam
5e7c36d9d2 revbump for boost-libs 2021-09-29 19:00:02 +00:00
nia
57b1e1ac6e py-numpy: "Python version >= 3.7 required." 2021-06-29 08:41:59 +00:00
adam
ba21c575c5 py-netCDF4: updated to 1.5.6
version 1.5.6 (tag v1.5.6rel)
=============================
* move CI/CD tests from travis/appveyor to Github Actions.
* move netCDF4 dir under src so module can be imported in source directory.
* change numpy.bool to numpy.bool_ and numpy.float to numpy.float_ (float and
  bool are deprecated in numpy 1.20)
* clean up docstrings so that they work with latest pdoc.
* update cython numpy API to remove deprecation warnings.
* Add "fromcdl" and "tocdl" Dataset methods for import/export of CDL
  via ncdump/ncgen called externally via the subprocess module.
* remove python 2.7 support.
* broadcast data (if possible)to conform to variable shape when writing to a slice

version 1.5.5.1 (tag v1.5.5.1rel)
=================================
* rebuild binary wheels for linux and OSX to link netcdf-c 4.7.4 and hdf5 1.12.0.

version 1.5.5 (tag v1.5.5rel)
=============================
* have setup.py always try use nc-config first to find paths to netcdf and
  hdf5 libraries and headers. Don't use pkg-config to find HDF5 if HDF5 env
  vars are set (or read from setup.cfg).
* Change MIT license text to standard OSI wording.

version 1.5.4 (tag v1.5.4rel)
=============================
* fix printing of variable objects for variables that end with the letter 'u'
* make sure root group has 'name' attribute.
* add the ability to pack vlen floats to integers using
  scale_factor/add_offset
* use len instead of deprecated numpy.alen
* check size on valid_range instead of using len.
* add `set_chunk_cache/get_chunk_cache` module functions to reset the
  default chunk cache sizes before opening a Dataset.
* replace use of numpy's deprecated tostring() method with tobytes()
* bump minimal numpy version to 1.9 (first version to have tobytes()).
2021-05-07 18:31:59 +00:00
adam
da0a125726 revbump for boost-libs 2021-04-21 13:24:06 +00:00
bacon
87edcb24b1 math/blas, math/lapack: Install interchangeable BLAS system
Install the new interchangeable BLAS system created by Thomas Orgis,
currently supporting Netlib BLAS/LAPACK, OpenBLAS, cblas, lapacke, and
Apple's Accelerate.framework.  This system allows the user to select any
BLAS implementation without modifying packages or using package options, by
setting PKGSRC_BLAS_TYPES in mk.conf. See mk/blas.buildlink3.mk for details.

This commit should not alter behavior of existing packages as the system
defaults to Netlib BLAS/LAPACK, which until now has been the only supported
implementation.

Details:

Add new mk/blas.buildlink3.mk for inclusion in dependent packages
Install compatible Netlib math/blas and math/lapack packages
Update math/blas and math/lapack MAINTAINER approved by adam@
OpenBLAS, cblas, and lapacke will follow in separate commits
Update direct dependents to use mk/blas.buildlink3.mk
Perform recursive revbump
2020-10-12 21:51:57 +00:00
adam
127f7cf1cf py-netCDF4: updated to 1.5.3
version 1.5.3
* make sure arrays are masked that are not filled when auto_fill is off
* python 3.8 binary wheels
2020-07-01 15:59:40 +00:00
adam
d62c903eea revbump after updating security/nettle 2020-05-22 10:55:42 +00:00
adam
7d4b705c63 revbump after boost update 2020-05-06 14:04:05 +00:00
wiz
f669fda471 *: recursive bump for libffi 2020-03-08 16:47:24 +00:00
rillig
b686dd9180 all: migrate several HOMEPAGEs to https
pkglint --only "https instead of http" -r -F

With manual adjustments afterwards since pkglint 19.4.4 fixed a few
indentations in unrelated lines.

This mainly affects projects hosted at SourceForce, as well as
freedesktop.org, CTAN and GNU.
2020-01-18 23:30:43 +00:00
jperkin
26c1bffc9f *: Recursive revision bump for openssl 1.1.1. 2020-01-18 21:48:19 +00:00
ryoon
eedd1e806f *: Recursive revbump from devel/boost-libs 2020-01-12 20:19:52 +00:00
minskim
86ff52b12f math/py-netCDF4: Import version 1.5.2
netCDF version 4 has many features not found in earlier versions of
the library, such as hierarchical groups, zlib compression, multiple
unlimited dimensions, and new data types. It is implemented on top of
HDF5. This module implements most of the new features, and can read
and write netCDF files compatible with older versions of the
library. The API is modelled after Scientific.IO.NetCDF, and should be
familiar to users of that module.

Packaged by Kamel Ibn Aziz Derouiche and updated by wiz@ and me.
2019-10-02 21:14:42 +00:00