CHANGELOG, 12 October 2003
add -X option to glimmer2, to allow orfs extending off ends of
sequence to be scored. Also fix bug affecting -p and -o options
when user chose zero overlap.
gcc3. While here, update to version 2.12 (previous version was erraneously
named 2.1, when it should have been 2.10) which is the only distfile
available on the ftp site.
Changelog seems to say:
- Fix bug on long-orfs.cc to avoid occasional array out-of-bounds
error (detected on Mac OS X).
brook at biology dot nmsu dot edu and his team at NMSU.
Glimmer (Gene Locator and Interpolated Markov Modeler) is a system for finding
genes in microbial DNA, especially the genomes of bacteria and archaea.
Glimmer uses interpolated Markov models (IMMs) to identify the coding regions
and distinguish them from noncoding DNA. The IMM approach uses a combination
of Markov models from 1st through 8th-order, weighting each model according to
its predictive power.
