Commit graph

348 commits

Author SHA1 Message Date
asau
d64da5a360 Update to MPICH2 1.3.1
Changes in 1.3.1

 # OVERALL: MPICH2 is now fully compliant with the CIFTS FTB standard
   MPI events (based on the draft standard).

 # OVERALL: Major improvements to RMA performance for long lists of
   RMA operations.

 # OVERALL: Performance improvements for Group_translate_ranks.

 # COLLECTIVES: Collective algorithm selection thresholds can now be controlled
   at runtime via environment variables.

 # ROMIO: PVFS error codes are now mapped to MPI error codes.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r7350:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.3.1

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.3.1?action=follow_copy&rev=HEAD&stop_rev=7350&mode=follow_copy


Changes in 1.3

 # OVERALL: Initial support for fine-grained threading in
   ch3:nemesis:tcp.

 # OVERALL: Support for Asynchronous Communication Progress.

 # OVERALL: The ssm and shm channels have been removed.

 # OVERALL: Checkpoint/restart support using BLCR.

 # OVERALL: Improved tolerance to process and communication failures
   when error handler is set to MPI_ERRORS_RETURN.  If a communication
   operation fails (e.g., due to a process failure) MPICH2 will return
   an error, and further communication to that process is not
   possible.  However, communication with other processes will still
   proceed normally.  Note, however, that the behavior collective
   operations on communicators containing the failed process is
   undefined, and may give incorrect results or hang some processes.

 # OVERALL: Experimental support for inter-library dependencies.

 # PM/PMI: Hydra is now the default process management framework
   replacing MPD.

 # PM/PMI: Added dynamic process support for Hydra.

 # PM/PMI: Added support for LSF, SGE and POE in Hydra.

 # PM/PMI: Added support for CPU and memory/cache topology aware
   process-core binding.

 # DEBUGGER: Improved support and bug fixes in the Totalview support.

 # Build system: Replaced F90/F90FLAGS by FC/FCFLAGS. F90/F90FLAGS are
   not longer supported in the configure.

 # Multi-compiler support: On systems where C compiler that is used to
   build mpich2 libraries supports multiple weak symbols and multiple aliases,
   the Fortran binding built in the mpich2 libraries can handle different
   Fortran compilers (than the one used to build mpich2).  Details in README.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r5762:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.3

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.3?action=follow_copy&rev=HEAD&stop_rev=5762&mode=follow_copy
2010-12-17 02:47:18 +00:00
asau
aa90e64631 Update to OpenMPI 1.5.1
Changes in 1.5.1

- Fixes for the Oracle Studio 12.2 Fortran compiler.
- Fix SPARC and SPARCv9 atomics.  Thanks to Nicola Stange for the
  initial patch.
- Fix Libtool issues with the IBM XL compiler in 64-bit mode.
- Restore the reset of the libevent progress counter to avoid
  over-sampling the event library.
- Update memory barrier support.
- Use memmove (instead of memcpy) when necessary (e.g., source and
  destination overlap).
- Fixed ompi-top crash.
- Fix to handle Autoconf --program-transforms properly and other
  m4/configury updates.  Thanks to the GASNet project for the
  --program transforms fix.
- Allow hostfiles to specify usernames on a per-host basis.
- Update wrapper compiler scripts to search for perl during configure,
  per request from the BSD maintainers.
- Minor man page fixes.
- Added --with-libltdl option to allow building Open MPI with an
  external installation of libltdl.
- Fixed various issues with -D_FORTIFY_SOURCE=2.
- Various VT fixes and updates.


Notable changes in 1.5

- Added "knem" support: direct process-to-process copying for shared
  memory message passing.  See http://runtime.bordeaux.inria.fr/knem/
  and the README file for more details.
- Updated shared library versioning scheme and linking style of MPI
  applications.  The MPI application ABI has been broken from the
  v1.3/v1.4 series.  MPI applications compiled against any prior
  version of Open MPI will need to, at a minimum, re-link.  See the
  README file for more details.
- Added "fca" collective component, enabling MPI collective offload
  support for Voltaire switches.
- Fixed MPI one-sided operations with large target displacements.
  Thanks to Brian Price and Jed Brown for reporting the issue.
- Fixed MPI_GET_COUNT when used with large counts.  Thanks to Jed
  Brown for reporting the issue.
- Made the openib BTL safer if extremely low SRQ settings are used.
- Fixed handling of the array_of_argv parameter in the Fortran
  binding of MPI_COMM_SPAWN_MULTIPLE (** also to appear: 1.4.3).
- Fixed malloc(0) warnings in some collectives.
- Fixed a problem with the Fortran binding for
  MPI_FILE_CREATE_ERRHANDLER.  Thanks to Secretan Yves for identifying
  the issue (** also to appear: 1.4.3).
- Updates to the LSF PLM to ensure that the path is correctly passed.
  Thanks to Teng Lin for the patch (** also to appear: 1.4.3).
- Fixes for the F90 MPI_COMM_SET_ERRHANDLER and MPI_WIN_SET_ERRHANDLER
  bindings.  Thanks to Paul Kapinos for pointing out the issue
  (** also to appear: 1.4.3).
- Fixed extra_state parameter types in F90 prototypes for
  MPI_COMM_CREATE_KEYVAL, MPI_GREQUEST_START, MPI_REGISTER_DATAREP,
  MPI_TYPE_CREATE_KEYVAL, and MPI_WIN_CREATE_KEYVAL.
- Fixes for Solaris oversubscription detection.
- If the PML determines it can't reach a peer process, print a
  slightly more helpful message.  Thanks to Nick Edmonds for the
  suggestion.
- Make btl_openib_if_include/exclude function the same way
  btl_tcp_if_include/exclude works (i.e., supplying an _include list
  overrides supplying an _exclude list).
- Apply more scalable reachability algorithm on platforms with more
  than 8 TCP interfaces.
- Various assembly code updates for more modern platforms / compilers.
- Relax restrictions on using certain kinds of MPI datatypes with
  one-sided operations.  Users beware; not all MPI datatypes are valid
  for use with one-sided operations!
- Improve behavior of MPI_COMM_SPAWN with regards to --bynode.
- Various threading fixes in the openib BTL and other core pieces of
  Open MPI.
- Various help file and man pages updates.
- Various FreeBSD and NetBSD updates and fixes.  Thanks to Kevin
  Buckley and Aleksej Saushev for their work.
- Fix case where freeing communicators in MPI_FINALIZE could cause
  process failures.
- Print warnings if shared memory state files are opened on what look
  like networked filesystems.
- Update libevent to v1.4.13.
- Allow propagating signals to processes that call fork().
- Fix bug where MPI_GATHER was sometimes incorrectly examining the
  datatype on non-root processes.  Thanks to Michael Hofmann for
  investigating the issue.
- Various Microsoft Windows fixes.
- Various Catamount fixes.
- Various checkpoint / restart fixes.
- Xgrid support has been removed until it can be fixed (patches
  would be welcome).
- Added simplistic "libompitrace" contrib package.  Using the MPI
  profiling interface, it essentially prints out to stderr when select
  MPI functions are invoked.
- Update bundled VampirTrace to v5.8.2.
- Add pkg-config(1) configuration files for ompi, ompi-c, ompi-cxx,
  ompi-f77, ompi-f90.  See the README for more details.
- Removed the libopenmpi_malloc library (added in the v1.3 series)
  since it is no longer necessary
- Add several notifier plugins (generally used when Open MPI detects
  system/network administrator-worthy problems); each have their own
  MCA parameters to govern their usage.  See "ompi_info --param
  notifier <name>" for more details.
  - command to execute arbitrary commands (e.g., run a script).
  - file to send output to a file.
  - ftb to send output to the Fault Tolerant Backplane (see
    http://wiki.mcs.anl.gov/cifts/index.php/CIFTS)
  - hnp to send the output to mpirun.
  - smtp (requires libesmtp) to send an email.
2010-12-16 21:00:53 +00:00
markd
740b61b73d Fix build on NetBSD-current: rename getline() and openssl>=1.0 issues. 2010-12-08 11:30:18 +00:00
asau
f2facf4d36 Does remove this patch (empty now). 2010-11-24 01:57:29 +00:00
asau
859ffc5347 Update to OpenMPI 1.4.3
New in 1.4.3
------------

- Fixed handling of the array_of_argv parameter in the Fortran
  binding of MPI_COMM_SPAWN_MULTIPLE.
- Fixed a problem with the Fortran binding for
  MPI_FILE_CREATE_ERRHANDLER.  Thanks to Secretan Yves for identifying
  the issue.
- Updates to the LSF PLM to ensure that the path is correctly passed.
  Thanks to Teng Lin for the patch.
- Fixes for the F90 MPI_COMM_SET_ERRHANDLER and MPI_WIN_SET_ERRHANDLER
  bindings.  Thanks to Paul Kapinos for pointing out the issue.
- Fixed various MPI_THREAD_MULTIPLE race conditions.
- Fixed an issue with an undeclared variable from ptmalloc2 munmap on
  BSD systems.
- Fixes for BSD interface detection.
- Various other BSD fixes.  Thanks to Kevin Buckley helping to track.
  all of this down.
- Fixed issues with the use of the -nper* mpirun command line arguments.
- Fixed an issue with coll tuned dynamic rules.
- Fixed an issue with the use of OPAL_DESTDIR being applied too aggressively.
- Fixed an issue with one-sided xfers when the displacement exceeds 2GBytes.
- Change to ensure TotalView works properly on Darwin.
- Added support for Visual Studio 2010.
- Fix to ensure proper placement of VampirTrace header files.
- Needed to add volatile keyword to a varialbe used in debugging
  (MPIR_being_debugged).
- Fixed a bug in inter-allgather.
- Fixed malloc(0) warnings.
- Corrected a typo the MPI_Comm_size man page (intra -> inter).  Thanks
  to Simon number.cruncher for pointing this out.
- Fixed a SegV in orted when given more than 127 app_contexts.
- Removed xgrid source code from the 1.4 branch since it is no longer
  supported in the 1.4 series.
- Removed the --enable-opal-progress-threads config option since
  opal progress thread support does not work in 1.4.x.
- Fixed a defect in VampirTrace's vtfilter.
- Fixed wrong Windows path in hnp_contact.
- Removed the requirement for a paffinity component.
- Removed a hardcoded limit of 64 interconnected jobs.
- Fix to allow singletons to use ompi-server for rendezvous.
- Fixed bug in output-filename option.
- Fix to correctly handle failures in mx_init().
- Fixed a potential Fortran memory leak.
- Fixed an incorrect branch in some ppc32 assembly code.  Thanks
  to Matthew Clark for this fix.
- Remove use of undocumented AS_VAR_GET macro during configuration.
- Fixed an issue with VampirTrace's wrapper for MPI_init_thread.
- Updated mca-btl-openib-device-params.ini file with various new vendor id's.
- Configuration fixes to ensure CPPFLAGS in handled properly if a non-standard
  valgrind location was specified.
- Various man page updates
2010-11-24 01:56:13 +00:00
wiz
c1a4752633 Add patch from Manuel Tobias Schiller:
I managed to trace things to the file libmetrics/netbsd/metrics.c in
the get_netbw function. Apparently, the code in get_netbw violates
alignment constraints for sparc64. I attached a patch against the result
of a "make patch" in parallel/ganglia-monitor-core. While I was at it, I
also changed proc_run_func somewhat to only count actually running
processes (having a look at NetBSD's ps(1) implementation) - without the
change, I got around 30 running processes on an idle machine.

"Looks good at a quick glance" martin@

Bump PKGREVISION.
2010-11-18 13:50:09 +00:00
wiz
200e3c4a04 Bump dependency on pixman to 0.18.4 because cairo-1.10 needs that
version, and bump all depends.

Per discussion on pkgsrc-changes.
2010-09-14 11:00:44 +00:00
seb
c3f1e700ad Bump the PKGREVISION for all packages which depend directly on perl,
to trigger/signal a rebuild for the transition 5.10.1 -> 5.12.1.

The list of packages is computed by finding all packages which end
up having either of PERL5_USE_PACKLIST, BUILDLINK_API_DEPENDS.perl,
or PERL5_PACKLIST defined in their make setup (tested via
"make show-vars VARNAMES=..."), minus the packages updated after
the perl package update.

sno@ was right after all, obache@ kindly asked and he@ led the
way. Thanks!
2010-08-21 16:32:42 +00:00
asau
dfc6889736 "fortran" -> "fortran77" except where it is clear that it isn't F77.
"fortran" is alias of "fortran77" for now, but it will change later.
2010-07-30 10:36:22 +00:00
wiz
e8d8834f6a Bump PKGREVISION for libpng shlib name change.
Also add some patches to remove use of deprecated symbols and fix other
problems when looking for or compiling against libpng-1.4.x.
2010-06-13 22:43:46 +00:00
adam
9d058a64ed Revision bump for db4 update 2010-06-02 13:25:53 +00:00
obache
8f22f22446 exactly disable to build with java, or result in PLIST mismatch. 2010-05-28 12:15:42 +00:00
asau
bd5d527473 Update to MPICH2 1.2.1p1.
This is primarily a bug fix release that fixes several issues on
PowerPC systems, build system bugs, and the MPD process manager.
2010-05-17 18:27:15 +00:00
asau
d1e81b58b6 Update to OpenMPI 1.4.2
Changes in v1.4.2 as compared to v1.4.1:

- Fixed problem when running in heterogeneous environments.
- Update LSF support to ensure that the path is passed correctly.
- Fixed some miscellaneous oversubscription detection bugs.
- IBM re-licensed its LoadLeveler code to be BSD-compliant.
- Various fixes for multithreading deadlocks, race conditions, and
  other nefarious things.
- Fixed ROMIO's handling of "nearly" contiguous issues (e.g., with
  non-zero true_lb).
- Bunches of Windows build fixes.
- Now allow the graceful failover from MTLs to BTLs if no MTLs can
  initialize successfully.
- Added "clobber" information to various atomic operations, fixing
  erroneous behavior in some newer versions of the GNU compiler suite.
- Update various iWARP and InfiniBand device specifications in the
  OpenFabrics .ini support file.
- Fix the use of hostfiles when a username is supplied.
- Various fixes for rankfile support.
- Updated the internal version of VampirTrace to 5.4.12.
- Fixed OS X TCP wireup issues having to do with IPv4/IPv6 confusion
  (see https://svn.open-mpi.org/trac/ompi/changeset/22788 for more
  details).
- Fixed some problems in processor affinity support, including when
  there are "holes" in the processor namespace (e.g., offline
  processors).
- Ensure that Open MPI's "session directory" (usually located in /tmp)
  is cleaned up after process termination.
- Fixed some problems with the collective "hierarch" implementation
  that could occur in some obscure conditions.
- Various MPI_REQUEST_NULL, API parameter checking, and attribute
  error handling fixes.
- Fix case where MPI_GATHER erroneously used datatypes on non-root nodes.
- Patched ROMIO support for PVFS2 > v2.7 (patch taken from MPICH2
  version of ROMIO).
- Fixed "mpirun --report-bindings" behavior when used with
  mpi_paffinity_alone=1.  Also fixed mpi_paffinity_alone=1 behavior
  with non-MPI applications.
- Ensure that all OpenFabrics devices have compatible receive_queues
  specifications before allowing them to communicate.  See the lengthy
  comment in https://svn.open-mpi.org/trac/ompi/changeset/22592 for details.
- Fix some issues with checkpoint/restart.
- Improve the pre-MPI_INIT/post-MPI_FINALIZE error messages.
- Ensure that loopback addresses are never advertised to peer
  processes for RDMA/OpenFabrics support.
- Fixed a CSUM PML false positive.
- Various fixes for Catamount support.
- Minor update to wrapper compilers in how user-specific argv is
  ordered on the final command line.  Thanks to Jed Brown for the
  suggestions.
2010-05-14 20:12:58 +00:00
joerg
3a06eb96bf Bump revision for PYTHON_VERSION_DEFAULT change. 2010-02-10 19:17:31 +00:00
joerg
14f89d39e5 Retire GridSim. 2010-02-10 17:33:36 +00:00
zafer
705b612f56 update MASTER_SITES. 2010-01-31 21:08:58 +00:00
asau
a8dd225f2a Update to OpenMPI 1.4.1:
- Update to PLPA v1.3.2, addressing a licensing issue identified by
  the Fedora project.  See
  https://svn.open-mpi.org/trac/plpa/changeset/262 for details.
- Add check for malformed checkpoint metadata files (Ticket #2141).
- Fix error path in ompi-checkpoint when not able to checkpoint
  (Ticket #2138).
- Cleanup component release logic when selecting checkpoint/restart
  enabled components (Ticket #2135).
- Fixed VT node name detection for Cray XT platforms, and fixed some
  broken VT documentation files.
- Fix a possible race condition in tearing down RDMA CM-based
  connections.
- Relax error checking on MPI_GRAPH_CREATE.  Thanks to David Singleton
  for pointing out the issue.
- Fix a shared memory "hang" problem that occurred on x86/x86_64
  platforms when used with the GNU >=4.4.x compiler series.
- Add fix for Libtool 2.2.6b's problems with the PGI 10.x compiler
  suite.  Inspired directly from the upstream Libtool patches that fix
  the issue (but we need something working before the next Libtool
  release).
2010-01-19 00:45:58 +00:00
wiz
579796a3e5 Recursive PKGREVISION bump for jpeg update to 8. 2010-01-17 12:02:03 +00:00
asau
a102105a66 DragonFly build fix: treat DragonFly the same way as FreeBSD.
Catched by bulk builds, tested by Stathis Kamperis.
2010-01-12 20:42:16 +00:00
joerg
3fbb207985 Recursive bump for libltdl 2009-12-15 21:54:17 +00:00
asau
cc3e5cec8f Conflicts with "mpich" and "mpich2" packages.
Noticed by Helge Muehlmeier.
2009-12-15 11:45:54 +00:00
asau
5fea2e3dc6 Update to MPICH2 1.2.1.
===============================================================================
                               Changes in 1.2.1
===============================================================================

 # OVERALL: Improved support for fine-grained multithreading.

 # OVERALL: Improved integration with Valgrind for debugging builds of MPICH2.

 # PM/PMI: Initial support for hwloc process-core binding library in
   Hydra.

 # PM/PMI: Updates to the PMI-2 code to match the PMI-2 API and
   wire-protocol draft.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r5425:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.2.1

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.2.1?action=follow_copy&rev=HEAD&stop_rev=5425&mode=follow_copy


===============================================================================
                               Changes in 1.2
===============================================================================

 # OVERALL: Support for MPI-2.2

 # OVERALL: Several fixes to Nemesis/MX.

 # WINDOWS: Performance improvements to Nemesis/windows.

 # PM/PMI: Scalability and performance improvements to Hydra using
   PMI-1.1 process-mapping features.

 # PM/PMI: Support for process-binding for hyperthreading enabled
   systems in Hydra.

 # PM/PMI: Initial support for PBS as a resource management kernel in
   Hydra.

 # PM/PMI: PMI2 client code is now officially included in the release.

 # TEST SUITE: Support to run the MPICH2 test suite through valgrind.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r5025:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.2

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.2?action=follow_copy&rev=HEAD&stop_rev=5025&mode=follow_copy


===============================================================================
                               Changes in 1.1.1p1
===============================================================================

 - OVERALL: Fixed an invalid read in the dataloop code for zero count types.

 - OVERALL: Fixed several bugs in ch3:nemesis:mx (tickets #744,#760;
   also change r5126).

 - BUILD SYSTEM: Several fixes for functionality broken in 1.1.1 release,
   including MPICH2LIB_xFLAGS and extra libraries living in $LIBS instead of
   $LDFLAGS.  Also, '-lpthread' should no longer be duplicated in link lines.

 - BUILD SYSTEM: MPICH2 shared libraries are now compatible with glibc versioned
   symbols on Linux, such as those present in the MX shared libraries.

 - BUILD SYSTEM: Minor tweaks to improve compilation under the nvcc CUDA
   compiler.

 - PM/PMI: Fix mpd incompatibility with python2.3 introduced in mpich2-1.1.1.

 - PM/PMI: Several fixes to hydra, including memory leak fixes and process
   binding issues.

 - TEST SUITE: Correct invalid arguments in the coll2 and coll3 tests.

 - Several other minor bug fixes, memory leak fixes, and code cleanup.  A full
   list of changes is available using:

     svn log -r5032:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1.1p1

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1.1p1?action=follow_copy&rev=HEAD&stop_rev=5032&mode=follow_copy


===============================================================================
                               Changes in 1.1.1
===============================================================================

 # OVERALL: Improved support for Boost MPI.

 # PM/PMI: Significantly improved time taken by MPI_Init with Nemesis and MPD on
   large numbers of processes.

 # PM/PMI: Improved support for hybrid MPI-UPC program launching with
   Hydra.

 # PM/PMI: Improved support for process-core binding with Hydra.

 # PM/PMI: Preliminary support for PMI-2. Currently supported only
   with Hydra.

 # Many other bug fixes, memory leak fixes and code cleanup. A full
   list of changes is available using:

  svn log -r4655:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1.1

  ... or at the following link:

  https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1.1?action=follow_copy&rev=HEAD&stop_rev=4655&mode=follow_copy


===============================================================================
                               Changes in 1.1
===============================================================================

- OVERALL: Added MPI 2.1 support.

- OVERALL: Nemesis is now the default configuration channel with a
  completely new TCP communication module.

- OVERALL: Windows support for nemesis.

- OVERALL: Added a new Myrinet MX network module for nemesis.

- OVERALL: Initial support for shared-memory aware collective
  communication operations.  Currently MPI_Bcast, MPI_Reduce, MPI_Allreduce,
  and MPI_Scan.

- OVERALL: Improved handling of MPI Attributes.

- OVERALL: Support for BlueGene/P through the DCMF library (thanks to
  IBM for the patch).

- OVERALL: Experimental support for fine-grained multithreading

- OVERALL: Added dynamic processes support for Nemesis.

- OVERALL: Added automatic as well as statically runtime configurable
  receive timeout variation for MPD (thanks to OSU for the patch).

- OVERALL: Improved performance for MPI_Allgatherv, MPI_Gatherv, and MPI_Alltoall.

- PM/PMI: Initial support for the new Hydra process management
  framework (current support is for ssh, rsh, fork and a preliminary
  version of slurm).

- ROMIO: Added support for MPI_Type_create_resized and
  MPI_Type_create_indexed_block datatypes in ROMIO.

- ROMIO: Optimized Lustre ADIO driver (thanks to Weikuan Yu for
  initial work and Sun for further improvements).

- Many other bug fixes, memory leak fixes and code cleanup. A full
  list of changes is available using:

  svn log -r813:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1

  ... or at the following link:

  https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1?action=follow_copy&rev=HEAD&stop_rev=813&mode=follow_copy
2009-12-13 18:38:10 +00:00
asau
38fb0e0a9a + openmpi 2009-12-12 23:32:10 +00:00
asau
43b8814eca Import OpenMPI 1.4 as parallel/openmpi.
OpenMPI is open source MPI-2 implementation.
2009-12-12 23:30:01 +00:00
asau
5cdb0f8408 Update to OpenPA 1.0.2.
New in OpenPA v1.0.2:

Major Changes:
      * Add support for 64-bit PPC.
      * Static initializer macros for OPA types.

balaji (1):
      * Fix pthread_mutex usage for inter-process shared memory regions.

buntinas (1):
      * added OPA typedef for pthread_mutex_t

fortnern (4):
      * Add more tests for compare-and-swap.
      * Add integer compare-and-swap fairness test.
      * Add pointer version of compare-and-swap fairness test.
      * Added configure test for pthread_yield.

goodell (6):
      * Fix bad include guard in the opa_by_lock.h header.
      * Add new "unsafe" primitives.  Also minor updates to the docs.
      * Add support for 64-bit PPC.
      * Update README to reflect 64-bit PPC support.
      * Add static initializer macros for OPA_int_t/OPA_ptr_t.
      * Actually include the COPYRIGHT and CHANGELOG files in the distribution.

jayesh (1):
      * Fixed compiler warnings in NT intrinsics. Now type casting the arguments to NT intrinsics correctly
2009-12-11 03:58:37 +00:00
asau
deb194fbb7 Support staged installation. 2009-12-10 21:19:16 +00:00
asau
6754aacfb8 Follow f2c/libf2c split: bump revision of all packages
that list Fortran in used languages.
2009-12-03 13:06:51 +00:00
joerg
6a85c1f555 Remove parallel/glunix. It fails in the patch phase on NetBSD 4 and
later. After fixing that, it fails with C++ errors, so it couldn't have
been build at least for 3 years. Assume noone cares.
2009-11-26 17:04:18 +00:00
brook
9ed8e79a26 Update to v3.1.2. The number of changes over the intervening years is
too large to list here.  See the ChangeLog file or the home page for
details.
2009-11-10 14:55:17 +00:00
asau
1dd807aeca Add "openpa". 2009-10-26 09:19:07 +00:00
asau
5751f91e9b Import OpenPA 1.0.1 as parallel/openpa.
OpenPA is open source, highly-portable library that provides
atomic primitives (and related constructs) for high performance,
concurrent software.
2009-10-23 21:57:20 +00:00
asau
f812c8be2d Remove parallel/openpbs as announced on pkgsrc-users and tech-pkg. 2009-09-13 08:25:34 +00:00
markd
1a63a19d60 Fix installed manual pages to correctly refer to SGE rather than GE.
Also fix some interpreter paths.  Bump PKGREVISION.
2009-08-19 09:56:22 +00:00
joerg
d289453e83 Remove @dirrm entries from PLISTs 2009-06-14 18:10:40 +00:00
obache
aae5d7a71b regen distinfo to refrect last update. 2009-06-11 07:15:54 +00:00
asau
8afd85a9a0 Update to PVM 3.4.6
Changes since previous release:
- security fixes;
- update of the BEOLIN architecture port;
- miscellaneous bug and documentation fixes.
2009-05-19 23:44:55 +00:00
markd
215305ee98 Update sge to 6.2.2.1
Grid Engine 6.2, which has undergone significant changes in qmaster to
significantly improve its scalability in challenging environments, adds
powerful features to the core system, introduces multi cluster support
for the Accounting and Reporting Console (ARCo) and comes with a new
module extending the scope of Grid Engine to a new domain of use cases:
the Service Domain Manager (SDM), aka. project Hedeby allows to
dynamically (re-)assign computational resources on demand.

plus lots of bug fixes.
2009-05-13 21:00:25 +00:00
joerg
d0076c3403 Remove the remaining NO_MTREE definitions, it has been a nop for a
while.
2009-04-08 22:43:23 +00:00
joerg
2d1ba244e9 Simply and speed up buildlink3.mk files and processing.
This changes the buildlink3.mk files to use an include guard for the
recursive include. The use of BUILDLINK_DEPTH, BUILDLINK_DEPENDS,
BUILDLINK_PACKAGES and BUILDLINK_ORDER is handled by a single new
variable BUILDLINK_TREE. Each buildlink3.mk file adds a pair of
enter/exit marker, which can be used to reconstruct the tree and
to determine first level includes. Avoiding := for large variables
(BUILDLINK_ORDER) speeds up parse time as += has linear complexity.
The include guard reduces system time by avoiding reading files over and
over again. For complex packages this reduces both %user and %sys time to
half of the former time.
2009-03-20 19:23:50 +00:00
hasso
0ce57ee89d Fix MAINTAINER. 2009-03-08 06:15:31 +00:00
asau
316a689776 Use MASTER_SITE_NETLIB for Netlib and its mirrors.
Discussed with Tobias Nygren.
2009-02-22 14:15:28 +00:00
joerg
a9ad053a90 Fix maintainer 2009-02-16 13:34:38 +00:00
joerg
3c645bb7fc Switch to Python 2.5 as default. Bump revision of all packages that have
changed runtime dependencies now.
2009-02-09 22:56:21 +00:00
jschauma
65e9c90d89 Give up maintainership, as I have not so much as looked at pkgsrc in
well over a year now.  Sorry. :-(
2009-01-23 21:14:16 +00:00
obache
af6c0740c7 Update MPICH2 to 1.0.8, maintainer update request by PR 40239.
Changes since 1.0.7:
- Added support for MPI 2.1
- Added support for MPI_Type_create_resized and
  MPI_Type_create_indexed_block datatypes in ROMIO.
- Bug fixes, memory leak fixes and code cleanup.
2008-12-21 11:41:01 +00:00
is
c3c4e532c6 Use ssh for SUN4SOL2, like everywhere else. Bump revision. 2008-12-16 15:56:17 +00:00
markd
dcd6a09cb8 Update SGE to 6.1.5
patch-au compiles sge_arch.c with -ansi so that stringification hack works
on NetBSD and FreeBSD and probably others. Otherwise architecture names
like nbsd-i386 turn into nbsd-1 - From the FreeBSD port.

Bugs fixed in SGE 6.1u5 since release 6.1u4

wrong documentation for upgrade 6.0u2 and higher to 6.1u2 and higher
Multiple loadsensor instances are trying to access the same temp load
 file on AIX51
Validation of the Filter List in Simple Query builder fails
qhost -l h=<hostname> does not work
Numbers in error mail too large
use of the same pathes for input/output stream must be dealt with
DRMAA Java language binding segfaults on Session.exit() with sol-x86
 binaries on AMD64
sgeexecd startup script shouldn't suppress error messages from sge_execd
 binary
Advanced Query with wild card character * does not produce correct results.
'Infinity' must be rejected when specified in 'complex_values' or RQS
 limits for consumables
Invalid qconf -mrqs crashes qmaster with segmentation fault
RQS: Line wrap of host list introduces syntax error
Row Limit in ARCo Simple Query builder cannot be empty
loadsensor does not work on AIX51
qhost -xml has wrong namespace
QMON: The help for Resource Quotas is not available
qmon fills in fields incorrectly for restoring config for Submit Job
sgemaster -qmaster stop shutdowns also shadowd
incorrect depencency on xinetd in init scripts for linux
Latebindings for Advanced Queries does not work
Switching from Simple Query to Advanced Query removes the Latebingings
32-bit Linux binaries are having problems with file access in 64-bit NFS
 environments
using of default_domain may prohibit execd installation
Commlib might crash if running out of memory
Configuration file check of automatic installation does not recognize remsh
loadcheck prints error message "kstat finds too many cpus"
Communication library thread locking problem results in qmaster crash
ARCo should not print exception stack trace in the console
TABLESPACE values should be written to dbwriter.conf
Incorrectly considering two host group names to be the same
Clients not disconnecting correctly
SGE util/arch script is broken for AIX 5.3 Operating System
error message given by qalter -q '' <jobid> suggests a memory access problem
bootstrap(5) man page sees itself als sge_conf(5)
qmaster reinstall overwriting an existing installation fails
qconf -ae|-Ae return 0 even if exechost exists already
qconf -dxxxx does not set exit status on error
qconf -as, -am, -ao, -Ae, -Acal, -Ackpt, -Ap when msg "already exist"
 should return not 0 exit code
qconf -acal doesn't return error code 1 when failed
setting of QMaster port number leads to infinite loop
use of -l tmpdir=abc can crash schedd
load scaling display not working correctly
qstat -j does not print array task information
job hold due to -hold_jid is not indicated as STATE_SYSTEM_ON_HOLD by
 drmaa_job_ps(3)
Segmentation fault of sge_schedd
A load sensor reporting values for other hosts does not work
reporting file is lacking information about global consumables, if
 log_consumables=false
Wallclock_Time query should be more constrained
"./install_execd -winsvc -auto /path/to/auto.conf" command causes error
The default has to be local spool directory when install_execd is run for
 a Windows host
qmaster runs out of memory on AIX
dbw install parameters are not verified
Incorrect slots_total from qstat -F -xml output
Wrong permissions if install_qmaster creates qmaster spool directory
Installation of execution daemon left user unclear which port was chosen.
Exception occurs during the exportation of a query result to pdf
memory leak in sge_execd with qsub -v SGE_* or qsub -V
ARCo should support SJWC 3.1

Bugs fixed in SGE 6.1u4 since release 6.1u3

on Windows installation fails when installing as root and SGE admin
 user = none
accounting records for slave tasks of pe jobs should contain the correct
 task submission time
check if config parameters qlogin_daemon and rlogin_daemon are pathes
parallel scheduling memory leak in sge_schedd
execd installation does not test absolute path for local spool dir
Sort on table column throws exception if explicit SORT specified in
 SimpleQuery Sort on table column
Error.jsp contains unbalanced tagError.jsp contains unbalanced tag
arco_read should be able to create synonyms instead of arco_write
DBW should use batch inserts
prolog an epilog descriptions should include exit codes
It is possible to negative tickets / shares in qmon and from the command
 line
ORDER BY clause ignored in Advanced Query
Queue Consumables query incorrect in ARCo predefined queries
CLI accepts the slot number of more than 10000000
ARCo online help contains invalid, unclear or outdated information
the installation of two rpc databases on the some host fails
DBWriter should not exit if there is a database connection error
Reporting 'View' dropdown menu and 'Save Result' functionality is confusing
DBW derived rules and reporting queries that count jobs need to be updated
incomplete error loging in case of classic spooling failures
Row Limit in Simple Query uses wrong syntax
NONE' as value is not rejected for queue_conf(5) shell and qsub(1) -S
Upgrade to 6.1u3 fails for PostgreSQL < 8.0, minor issues i
 dbdefinition.xml for PSQL > 8.0
dbwriter should write checkpoint to database
dbwriter deletion rules delete tasks of pe_jobs
unclear 'exit_status' description in accounting(5) about Grid Engine
 specific status
autoinstall configfile should be parsed and checked for valid input!
qstat -j output is broken for shell_path
the project field should be displayed in the qstat -j output
Wrong variable for calculating daily host values from hourly ones
Pending PE job qstat -j output displays addtional useless message when not
 running because of RQs
automatic backup is broken!
Spelling mistakes in the qmon help menus
deletion rule for PostgreSQL incorrect for deletion of sge_share_log
qquota broken if quota definition contains "hosts" or "users" scope negation
Access_list(5) man page not precise enough with regards secondary/primary
 group(s)
RQS debitation of running jobs is broken if enabled by -mattr
Set SGE_QMASTER_PORT in settings file if sge_qmaster is not found in
 /etc/services file
Failed to deliver STOP signal for subordinated jobs
Missing array job task usage in the accounting file
qhost/qstat can't be interrupted with ctrl-c
typographical errors in messages from install_qmaster
Sort order and row limit cannot be specified together in ARCo Simple Query
 builder
Qmaster segfaults with long host resource evaluation expression
Error message for unsupported platforms should be more verbose
qsub does not accept resource strings size larger than 256
Memory leak in drmaa_run_job()/drmaa_run_bulk_job()
ARCo reporting module installation script is broken on Red Hat Enterprise
 Linux 4 Update 4
Job predecessor list missing from qstat -j output
In SJWC on Oracle dates appear truncated to just MM/DD/YYYY
configfile check in automatic installation is to strict
load sensor might block execd port
Uninstallation of remote execd if not interactive
Infotext spawned on remote machine with -wait or -ask does not display the
 text
Uninstall does not remove the SGE_STARTUP_SCRIPT
qmaster crashes when SGE_ND=1, dl 2 and BDB server spooling
inst_sge -ux all -um fails
Usage string for some commands is incomplete
dbwriter installation can't finish on large amount of data
reprioritize disappears after sge_qmaster restart
qmaster failover should not change the state of any queue
2008-11-26 10:20:08 +00:00
wiz
285b7dd776 Bump PKGREVISION for libXaw API depends bump due to libXaw8 removal. 2008-11-10 17:21:33 +00:00
he
b021813da0 Bump the PKGREVISION for all packages which depend directly on perl,
to trigger/signal a rebuild for the transition 5.8.8 -> 5.10.0.

The list of packages is computed by finding all packages which end
up having either of PERL5_USE_PACKLIST, BUILDLINK_API_DEPENDS.perl,
or PERL5_PACKLIST defined in their make setup (tested via
"make show-vars VARNAMES=...").
2008-10-19 19:17:40 +00:00