Commit graph

15 commits

Author SHA1 Message Date
nia
414fc7869d math: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
2021-10-26 10:55:21 +00:00
nia
3c576fbd23 math: Remove SHA1 hashes for distfiles 2021-10-07 14:27:43 +00:00
mef
1bc887bd0d (math/R-e1071) Updated 1.7.8 to 1.7.9
(R CMD Rdconv -t txt math/R-e1071/work/e1071/inst/NEWS.Rd)
Changes in version 1.7-9:
  * Remove configure code testing for gcc 2.96.
2021-09-19 08:40:57 +00:00
mef
40140c7627 (math/R-e1071) Updated 1.7.2 to 1.7.8
(by  R CMD Rdconv -t txt math/R-e1071/work/e1071/inst/NEWS.Rd)

Changes in version 1.7-8:

        * Bugfixes in 'gknn()': wrong behavior in case of tied
          k-nearest neighbors (for 'use_all=TRUE'), and also in case of
          an overall class tie.

Changes in version 1.7-7:

        * Bugfix in examples of 'cshell()'

Changes in version 1.7-6:

        * Bugfix in 'scale_data_frame()' - now calls 'scale()' if x is
          not a data frame.

Changes in version 1.7-5:

        * NaiveBayes: better handling od character and logical features

        * Added: 'gknn()' for generalized k-Nearest Neighbours (using
          arbitrary proximity measures)

        * Added: 'scale_data_frame()' for scaling the numeric columns
          of a data frame.

Changes in version 1.7-4:

        * Bug fix: "inverse" argument for class.weights argument in
          'svm.default()' did not work
2021-09-16 04:16:47 +00:00
brook
93e94bec97 Update all R packages to canonical form.
The canonical form [1] of an R package Makefile includes the
following:

- The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as
  needed), and CATEGORIES.

- HOMEPAGE is not present but defined in math/R/Makefile.extension to
  refer to the CRAN web page describing the package.  Other relevant
  web pages are often linked from there via the URL field.

This updates all current R packages to this form, which will make
regular updates _much_ easier, especially using pkgtools/R2pkg.

[1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html
2019-08-08 19:53:36 +00:00
brook
66a7cfa985 R-e1071: update to version 1.7.2.
Update to the canonical form of an R package and fix the LICENSE
field.
2019-07-31 19:21:32 +00:00
brook
d1d2bdf864 Remove MASTER_SITES= from individual R package Makefiles.
Each R package should include ../../math/R/Makefile.extension, which also
defines MASTER_SITES.  Consequently, it is redundant for the individual
packages to do the same.  Package-specific definitions also prevent
redefining MASTER_SITES in a single common place.
2018-07-28 14:40:42 +00:00
minskim
a1b7c494c5 math/R-e1071: Update to 1.6-8
Changes:

- add and use native symbols for C-code
- naiveBayes() now supports logical variables
2018-01-17 18:43:10 +00:00
wiz
76d983338a Update HOMEPAGE. 2017-09-08 06:24:30 +00:00
wen
203f5b792c Update to 1.6.7
Upstream changes:
Changes in version 1.6-7

    fix some bug in handling weights in svm.default

Changes in version 1.6-6

    fix numeric issue in classAgreement()

    add functions from recommended packages to NAMESPACE

    fix bug in svm.default (incorrect handling of subset= argument)

    fix bug in predict.svm (new data with NA in response got removed)

    residuals are now correctly computed for regression in case of scaled data

Changes in version 1.6-5

    hamming.distance() no longer converts input to binary

    tune() now uses mean() to aggregate error measures from cross-fold replications

Changes in version 1.6-4

    remove library("SparseM") statements in code, use namespace semantics instead

    Fix memory leak and uninitialized read error in write.svm()

    add warning in predict.svm() if probabilities should be predicted, but the model was not trained with probability = TRUE

    add eps to laplace smoothing in predict.naiveBayes() to account for close-zero probabilities also.

    use R's random number generator for cross-validation and probability computation instead of the system one.

Changes in version 1.6-3

    remove require() statements and dependency on stats

Changes in version 1.6-2

    vignettes moved to vignettes folder.

    libsvm upgrade to version 3.17, getting rid of stdout and stderr
2016-01-01 12:03:03 +00:00
agc
286ea2536c Add SHA512 digests for distfiles for math category
Problems found locating distfiles:
	Package dfftpack: missing distfile dfftpack-20001209.tar.gz
	Package eispack: missing distfile eispack-20001130.tar.gz
	Package fftpack: missing distfile fftpack-20001130.tar.gz
	Package linpack: missing distfile linpack-20010510.tar.gz
	Package minpack: missing distfile minpack-20001130.tar.gz
	Package odepack: missing distfile odepack-20001130.tar.gz
	Package py-networkx: missing distfile networkx-1.10.tar.gz
	Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
	Package quadpack: missing distfile quadpack-20001130.tar.gz

Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden).  All existing
SHA1 digests retained for now as an audit trail.
2015-11-03 23:33:26 +00:00
wen
8f648f4c57 Update to 1.6.1
Upstream changes:
Changes in version 1.6-1

write.matrix.csr() now accepts a fac argument similar to read.matrix.csr(), writing factor levels instead of the numeric codes.

naiveBayes() uses a numerically more stable formula for calculating the a-posterior probabilities.

predict.naiveBayes() now accepts data with predictors in an order different from the training data, and also ignores variables not in the model (especially the response variable).

svm() checks whether parameters which are passed to the C-code are set to NULL to avoid segfaults.
2013-08-15 09:34:23 +00:00
brook
308a844a44 Update to e1071 v1.6, add LICENSE and regularize package files. 2012-04-15 15:25:09 +00:00
adam
d5a01f60ca Changes 2.11.1:
* R CMD INSTALL checks if dependent packages are available early on
* in the installation of source packages, thereby giving clearer
  error messages.
* R CMD INSTALL --build now names the file in the format used
  for Mac OS X binary files on that platform.
* BIC() in package stats4 now also works with multiple fitted models,
  analogously to AIC().
* Use of file extension .C for C++ code in packages is now
  deprecated: it has caused problems for some 'make's on
  case-insensitive file systems (although it currently works
  with the recommended toolkits).
* The C function mkCharLenCE now no longer reads past 'len' bytes
  (unlikely to be a problem except in user code).
* On systems without any default LD_LIBRARY_PATH (not even
  /usr/local/lib), [DY]LIB_LIBRARY_PATH is now set without a trailing colon.
* More efficient utf8ToInt() on long multi-byte strings with
  many multi-byte characters.
* aggregate.ts() gave platform-depedent results due to rounding
  error for ndeltat != 1.
* package.skeleton() sometimes failed to fix filenames for .R or
  .Rd files to start with an alphanumeric.
2010-07-03 07:25:57 +00:00
adam
eee38b60c2 Functions for latent class analysis, short time Fourier transform, fuzzy
clustering, support vector machines, shortest path computation, bagged
clustering, naive Bayes classifier, ...
2009-12-11 19:09:46 +00:00