pkgsrc/math
markd 026fef7428 Update R to version 2.4.1.
pkgsrc changes: no longer automatically generate the PLIST.
     use (de)install templates for handling updating the index files
     when adding/removing R packages.

Changes 2.4.1
This is a maintenance release and fixes a number of mostly minor bugs.

Changes 2.4.0
This release has many new features. One important aspect is that S4
classes now have their own internal type, and S4 method dispatch has
been completely revised to using cached generic functions, giving
substantial performance improvements. As a consequence, all packages
depending on "methods" need to be reinstalled.
2007-03-14 11:50:17 +00:00
..
abs - fine grained X11 dependencies for packages which have either USE_IMAKE 2006-12-27 13:37:35 +00:00
admesh Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
algae Needs a C compiler. 2006-07-21 05:28:26 +00:00
antixls Add an explicit run-time dependency on perl because these packages 2006-07-07 22:10:06 +00:00
aribas share/emacs/site-lisp now exists by default -- don't try to remove it. 2007-02-20 19:04:10 +00:00
bc List the info files directly in the PLIST and honor PKG{INFO,MAN}DIR. 2006-04-05 23:01:15 +00:00
blas Change the format of BUILDLINK_ORDER to contain depth information as well, 2006-07-08 23:10:35 +00:00
blitz++ Added "c" to USE_LANGUAGES for packages that use GNU configure scripts, 2006-07-22 04:46:13 +00:00
calc Update MASTER_SITES and/or HOMEPAGE, from Sergey Svishchev. 2006-10-04 21:47:16 +00:00
calcoo Bump BUILDLINK_ABI_DEPENDS.png and PKGREVISION for png-1.2.9nb2 update. 2006-04-17 13:45:57 +00:00
capc-calc update to 2.12.1.8 2007-02-22 20:30:15 +00:00
cln Update MASTER_SITES. 2007-01-07 09:54:52 +00:00
dcdflib.c Fixed pkglint warnings. 2006-06-09 09:58:57 +00:00
dcdflib.f Fixed pkglint warnings. Fixed gcc warnings. Bumped PKGREVISION since the 2006-06-09 10:26:05 +00:00
dfftpack Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
djbfft Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
eispack Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
ess Make this package install correctly regardless of whether we are using 2006-03-31 04:29:51 +00:00
eukleides Update MASTER_SITES and/or HOMEPAGE, from Sergey Svishchev. 2006-10-04 21:47:16 +00:00
euler Rename variable MAKEFILE to MAKE_FILE. 2006-09-09 02:41:53 +00:00
fftpack Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
fftw When PKGSRC_RUN_TEST is set to "yes", Perl is needed. 2006-07-21 07:07:17 +00:00
fftw2 Needs a C compiler. 2006-07-21 05:28:26 +00:00
fftwf Update fftwf to version 3.1.2: 2006-11-15 01:11:13 +00:00
fgmp Fix a bug in the mpz_random*() routines, by setting the sn field in the 2007-01-04 19:37:51 +00:00
galculator Needs intltool. 2006-07-19 10:08:12 +00:00
gap Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
gcalctool update to 5.8.25 2006-11-09 21:14:41 +00:00
geg Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
genius Fix build on systems without wordexp(3). While wordexp returns the 2007-03-07 16:48:39 +00:00
glpk Chaneges 4.15: 2007-02-20 12:57:21 +00:00
gnumeric Compile with libgda-2.99.2 and libgnomedb-2.99.2. Bump PKGREVISION. 2007-01-21 19:17:33 +00:00
gp-autpgrp Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
gp-factint Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
gp-fplsa Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
gp-grape Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
gp-grpconst Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
gp-lag Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
grace Mechanically replace all includes of buildlink3.mk of the following 2006-12-15 20:32:52 +00:00
graphopt pkglint cleanup; update HOMEPAGE/MASTER_SITES. 2007-02-22 19:01:13 +00:00
grpn Needs mkdirhier. 2006-06-09 06:34:57 +00:00
gsl Update to 1.9: 2007-02-26 08:05:15 +00:00
gtklife Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
guppi pkglint cleanup; update HOMEPAGE/MASTER_SITES. 2007-02-22 19:01:13 +00:00
lapack cc is used at least on DragonFly for linkage, so keep C in USE_LANGUAGES. 2006-08-22 23:27:23 +00:00
libffm Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
libmatheval update to 1.1.4 2007-03-13 10:51:42 +00:00
linpack Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
ltm Update to 0.39. 2006-09-09 09:35:10 +00:00
mapm Uses C++. 2006-06-02 13:38:53 +00:00
mathomatic Mechanically replaced man/* with ${PKGMANDIR}/* in the definition of 2007-01-07 09:13:46 +00:00
maxima update to 5.10.0 2006-10-23 09:50:44 +00:00
mcsim List the info files directly in the PLIST and honor PKG{INFO,MAN}DIR. 2006-04-05 23:01:15 +00:00
meschach Rename variable MAKEFILE to MAKE_FILE. 2006-09-09 02:41:53 +00:00
metis Update MASTER_SITES and/or HOMEPAGE, from Sergey Svishchev. 2006-10-04 21:47:16 +00:00
minpack Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
mpfr Change the format of BUILDLINK_ORDER to contain depth information as well, 2006-07-08 23:10:35 +00:00
mtl Uses C and C++. 2006-07-11 00:19:20 +00:00
newmat Rename variable MAKEFILE to MAKE_FILE. 2006-09-09 02:41:53 +00:00
nickle modify a fix (about signed integer overflow non-portability) so that 2007-03-13 10:55:12 +00:00
ntl Rename variable MAKEFILE to MAKE_FILE. 2006-09-09 02:41:53 +00:00
octave PKGREVISION bump for flac shlib major bump and corresponding ABI 2007-01-07 12:25:50 +00:00
octave-current PKGREVISION bump for flac shlib major bump and corresponding ABI 2007-01-07 12:25:50 +00:00
octave-forge Modular Xorg support. 2007-02-06 18:05:58 +00:00
odepack Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
otter Update MASTER_SITES and/or HOMEPAGE, from Sergey Svishchev. 2006-10-04 21:47:16 +00:00
p5-Math-Base85 This module handles numbers in base 85, via strings and Math::BigInt. 2005-08-13 07:59:41 +00:00
p5-Math-Bezier Add HOMEPAGE. 2007-02-27 09:22:38 +00:00
p5-Math-BigInteger DESTDIR support. 2006-11-05 17:17:04 +00:00
p5-Math-FFT Update to 1.28: 2007-02-27 09:23:45 +00:00
p5-Math-GMP Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
p5-Math-Interpolate Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
p5-Math-MatrixReal Update to 2.01: 2007-02-27 09:25:29 +00:00
p5-Math-Pari This build process is just plain evil. In any case, don't throw away a 2007-01-05 13:41:21 +00:00
p5-Math-Random Bump the PKGREVISIONs of all (638) packages that hardcode the locations 2005-08-06 06:19:03 +00:00
p5-Number-Compare Bump the PKGREVISIONs of all (638) packages that hardcode the locations 2005-08-06 06:19:03 +00:00
p5-Number-Latin Bump the PKGREVISIONs of all (638) packages that hardcode the locations 2005-08-06 06:19:03 +00:00
p5-Set-Crontab Bump the PKGREVISIONs of all (638) packages that hardcode the locations 2005-08-06 06:19:03 +00:00
p5-Set-Infinite Bump the PKGREVISIONs of all (638) packages that hardcode the locations 2005-08-06 06:19:03 +00:00
p5-Spreadsheet-ParseExcel Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
p5-Spreadsheet-WriteExcel Update p5-Spreadsheet-WriteExcel to 2.17. 2006-11-05 02:27:37 +00:00
pari Modular Xorg support. 2007-01-23 17:59:42 +00:00
pari-galdata Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
pear-Numbers_Roman Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
pear-Numbers_Words Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
php-bcmath Fix CONFLICTS of php/pear packages, the asterix was missing (thanks tv). 2006-06-04 16:26:54 +00:00
pspp Never run gengarbage, it can block the build infinitly. 2006-07-09 13:43:56 +00:00
py-ephem Add LICENSE=. 2006-11-13 22:49:51 +00:00
py-fpconst Change the format of BUILDLINK_ORDER to contain depth information as well, 2006-07-08 23:10:35 +00:00
py-numarray update to 1.5.2 2006-10-17 14:25:43 +00:00
py-Numeric Change the format of BUILDLINK_ORDER to contain depth information as well, 2006-07-08 23:10:35 +00:00
py-pytables update to 1.3.3 2006-10-17 14:32:32 +00:00
py-rpy Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
py-Scientific Dependency (py-Numeric) doesn't exist for Python 2.0 and 2.1. 2006-06-02 23:33:30 +00:00
py-Scientific-doc Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
qalculate Drop the pthrea check in configure completely and just set 2007-02-22 16:15:14 +00:00
qalculate-bases LIBTOOL_OVERRIDE generally doesn't need to be specified anymore... just 2006-07-07 15:49:30 +00:00
qalculate-currency LIBTOOL_OVERRIDE generally doesn't need to be specified anymore... just 2006-07-07 15:49:30 +00:00
qalculate-gtk Changes 0.9.5: 2007-02-20 15:08:47 +00:00
qalculate-kde Changes 0.9.5: 2007-02-20 15:08:47 +00:00
qalculate-units LIBTOOL_OVERRIDE generally doesn't need to be specified anymore... just 2006-07-07 15:49:30 +00:00
quadpack Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
R Update R to version 2.4.1. 2007-03-14 11:50:17 +00:00
R-abind Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-akima Needs a C compiler. 2006-07-23 16:47:11 +00:00
R-CGIwithR Recursive revision bump / recommended bump for gettext ABI change. 2006-02-05 23:08:03 +00:00
R-chron Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-clim.pact Update to 2.2.1 and fix dependencies. 2006-07-02 13:22:52 +00:00
R-combinat Initial import R-combinat 0.0.6 2006-07-02 13:16:03 +00:00
R-DAAG Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-date Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-gdata Fixed the path to the Perl interpreter. Bumped PKGREVISION. 2006-07-23 16:59:22 +00:00
R-genetics Update to version 1.2.0, add correct dependencies. 2006-07-02 13:19:53 +00:00
R-geoR Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-GRASS Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-gstat Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-gtools There is some debugging information in gtools.so. 2007-01-08 04:40:27 +00:00
R-httpRequest Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-hwde Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-ISwR Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-lmm pkglint USE_LANGUAGES cleanup. Patch from Sergey Svishchev. 2007-02-22 19:30:02 +00:00
R-mapproj Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-maps Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-Matrix Needs the blas package for building. 2006-07-23 17:08:56 +00:00
R-mvtnorm pkglint USE_LANGUAGES cleanup. Patch from Sergey Svishchev. 2007-02-22 19:30:02 +00:00
R-ncdf Updated R-ncdf to 1.6, since the old distfile is no longer available. 2006-07-23 17:04:12 +00:00
R-PHYLOGR Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-pixmap Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-R2HTML Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-RArcInfo Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-Rcmdr Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-sgeostat pkglint USE_LANGUAGES cleanup. Patch from Sergey Svishchev. 2007-02-22 19:30:02 +00:00
R-shapefiles Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-statmod Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
R-wle pkglint USE_LANGUAGES cleanup. Patch from Sergey Svishchev. 2007-02-22 19:30:02 +00:00
randlib Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
ruby-gsl Fixed the pkglint warnings about "${WRKSRC}/..". 2006-08-31 08:42:41 +00:00
sc Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
scilab remove some extra included bl3.mk files which are not needed 2007-02-04 20:42:24 +00:00
slatec When all source files are compiled with a Fortran compiler, why should a 2006-07-27 18:49:47 +00:00
snns - fine grained X11 dependencies for packages which have either USE_IMAKE 2006-12-27 13:37:35 +00:00
statist Point MAINTAINER to pkgsrc-users@NetBSD.org in the case where no 2006-03-04 21:28:51 +00:00
superlu Update MASTER_SITES and/or HOMEPAGE, from Sergey Svishchev. 2006-10-04 21:47:16 +00:00
tasp-vsipl Modular Xorg support. 2007-02-19 21:38:32 +00:00
tochnog Rename variable MAKEFILE to MAKE_FILE. 2006-09-09 02:41:53 +00:00
udunits Update MASTER_SITES and/or HOMEPAGE, from Sergey Svishchev. 2006-10-04 21:47:16 +00:00
units Import GNU units 1.86. 2006-11-19 04:56:17 +00:00
vista Don't include x11.b3.mk directly as this is pure lisp. 2007-02-19 20:02:18 +00:00
xeukleides Update MASTER_SITES and/or HOMEPAGE, from Sergey Svishchev. 2006-10-04 21:47:16 +00:00
xfractint Modular Xorg support. A special spicy cookie goes to rillig for finding 2007-02-15 14:44:04 +00:00
xgap Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
xldlas Mechanically replaced man/* with ${PKGMANDIR}/* in the definition of 2007-01-07 09:13:46 +00:00
xlife pkglint cleanup; update HOMEPAGE/MASTER_SITES. 2007-02-22 19:01:13 +00:00
xlispstat Modular Xorg support. 2007-02-19 19:51:17 +00:00
xmgr Mechanically replace all includes of buildlink3.mk of the following 2006-12-15 20:32:52 +00:00
yacas share/emacs/site-lisp now exists by default -- don't try to remove it. 2007-02-20 19:04:10 +00:00
yorick Whitespace cleanup, courtesy of pkglint. 2007-02-22 19:26:05 +00:00
Makefile +nickle 2007-02-22 20:37:03 +00:00