pkgsrc/biology
2021-04-22 08:38:59 +00:00
..
ad2vcf biology/ad2vcf: import ad2vcf-0.1.2 2021-03-24 18:19:21 +00:00
arka biology/arka: document 2 instances of char as array index 2020-05-03 14:58:18 +00:00
azara *: recursive bump for libffi 2020-03-08 16:47:24 +00:00
bcftools biology/htslib: Update to 1.12 2021-03-20 18:17:07 +00:00
bedtools biology/bedtools: Update to 2.30.0 2021-02-08 01:49:25 +00:00
biolibc biology/biolibc: import biolibc-0.1.1 2021-03-24 15:20:08 +00:00
bioperl bioperl: update to 1.7.7. 2020-09-06 20:07:47 +00:00
bodr revbump for textproc/icu 2021-04-21 11:40:12 +00:00
bowtie2 biology/bowtie2: import bowtie2-2.4.2 2021-01-21 17:30:12 +00:00
bwa *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
canu revbump for boost-libs 2021-04-21 13:24:06 +00:00
cdhit *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool *: revbump after fontconfig bl3 changes (libuuid removal) 2020-08-17 20:17:15 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce *: remove dead download locations 2021-04-21 09:12:23 +00:00
coordgenlibs revbump for boost-libs 2021-04-21 13:24:06 +00:00
fastDNAml *: remove dead download location 2021-04-21 09:11:13 +00:00
fastp biology/fastp: document possible array[char] bug 2020-05-25 05:18:35 +00:00
fastqc biology/fastqc: import fastqc-0.11.9 2021-01-20 15:57:17 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit *: revbump after fontconfig bl3 changes (libuuid removal) 2020-08-17 20:17:15 +00:00
generand biology/generand: import generand-0.1.2 2021-03-21 14:23:46 +00:00
genesplicer
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils revbump for textproc/icu 2021-04-21 11:40:12 +00:00
gp all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
gromacs revbump for textproc/icu 2021-04-21 11:40:12 +00:00
hisat2 Revbump packages with a runtime Python dep but no version prefix. 2020-12-04 20:44:57 +00:00
hmmer
htslib revbump for boost-libs 2021-04-21 13:24:06 +00:00
igv biology/igv: import igv-2.9.2 2021-02-24 13:54:25 +00:00
kallisto kallisto: remove patches that were removed from distinfo during update 2020-07-30 07:59:19 +00:00
lucy mark packages that fail with -Werror=char-subscripts 2020-05-20 06:09:03 +00:00
maeparser revbump for boost-libs 2021-04-21 13:24:06 +00:00
molsketch revbump for textproc/icu 2021-04-21 11:40:12 +00:00
mopac
mpqc math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
mummer *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
ncbi-blast+ revbump for boost-libs 2021-04-21 13:24:06 +00:00
nut all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
openbabel revbump for boost-libs 2021-04-21 13:24:06 +00:00
p5-Bio-ASN1-EntrezGene p5-Bio-ASN1-EntrezGene: update to 1.73. 2020-09-06 19:43:03 +00:00
pdbalign
phylip *: remove dead download locations 2021-04-21 09:12:23 +00:00
plink math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
plinkseq Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
primer3 *: Convert broken sourceforge HOMEPAGEs back to http 2020-03-20 11:57:22 +00:00
profit
puzzle biology: align variable assignments 2019-11-02 22:09:00 +00:00
py-biopython math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
py-cutadapt py-cutadpt: add missing build dependency 2021-04-22 08:36:59 +00:00
py-dnaio py-dnaio: mark incompatible with python 2 2021-04-22 08:38:59 +00:00
py-mol math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
py-pydicom py-pydicom: Update to 1.3.0 2019-10-01 14:45:29 +00:00
R-popbio biology/R-popbio: import R-popbio-2.7 2020-08-10 18:18:46 +00:00
rasmol
samtools biology/htslib: Update to 1.12 2021-03-20 18:17:07 +00:00
sewer *: remove dead download location 2021-04-21 09:11:13 +00:00
stacks Revbump packages with a runtime Python dep but no version prefix. 2020-12-04 20:44:57 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
vcf-split biology/vcf-split: import vcf-split-0.1.1 2021-03-24 15:22:29 +00:00
vcf2hap biology/vcf2hap: import vcf2hap-0.1.2 2021-03-24 18:22:53 +00:00
vsearch Fix portability 2020-03-26 02:37:38 +00:00
xylem all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
Makefile biology/Makefile: Add vcf2hap 2021-03-24 18:23:33 +00:00