pkgsrc/biology/hmmer
minskim 15e9128d89 Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483.
While here, enable pkgviews installation.

Changes:
-:- hmmsearch intermittently failed on Swissprot searches, on some
    platforms (reports on AMD/Linux; Mac OS/X). (#h25)
-:- hmmpfam memory allocation strategy did not guarantee RAMLIMIT,
    and could explode to very large allocations when searching
    with large sequences. (#h26)
-:- technical improvements in handing dsq's (digitized sequences);
    "bug" has no visible effects, except when compiling on
    different platforms. (#h27)
-:- typo fix in P7Forward() recursion; typo may have had minor
    effect on calculated scores. (#h28)
-:- hmmalign now includes --outformat and --oneline option for
    specifying different output alignment formats than the default
    Stockholm.
2004-12-01 04:01:09 +00:00
..
patches Remove unnecessary -p following MKDIR commands. 2004-08-23 14:37:04 +00:00
DESCR Convert to buildlink3 and correct a spelling error in DESCR. 2004-04-11 04:06:09 +00:00
distinfo Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483. 2004-12-01 04:01:09 +00:00
Makefile Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483. 2004-12-01 04:01:09 +00:00
PLIST Initial import of hmmer, one of the many packages provided by 2003-09-26 03:52:47 +00:00