pkgsrc/biology/bedtools/patches/patch-src_utils_htslib_Makefile
bacon 3e1d59d803 biology/bedtools: Update to 2.30.0
Some major performance improvements
Numerous minor bug fixes and enhancements
Added a do-test target to the pkgsrc Makefile
2021-02-08 01:49:25 +00:00

24 lines
773 B
Text

$NetBSD: patch-src_utils_htslib_Makefile,v 1.2 2021/02/08 01:49:25 bacon Exp $
# Respect pkgsrc env
--- src/utils/htslib/Makefile.orig 2021-01-23 19:33:26.000000000 +0000
+++ src/utils/htslib/Makefile
@@ -22,7 +22,7 @@
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
# DEALINGS IN THE SOFTWARE.
-CC = gcc
+CC ?= gcc
AR = ar
RANLIB = ranlib
@@ -33,7 +33,7 @@ CPPFLAGS =
# TODO: probably update cram code to make it compile cleanly with -Wc++-compat
# For testing strict C99 support add -std=c99 -D_XOPEN_SOURCE=600
#CFLAGS = -g -Wall -O2 -pedantic -std=c99 -D_XOPEN_SOURCE=600 -D__FUNCTION__=__func__
-CFLAGS = -g -Wall -O2
+CFLAGS ?= -g -Wall -O2
EXTRA_CFLAGS_PIC = -fpic
LDFLAGS =
LIBS = $(htslib_default_libs)