pkgsrc/biology/kallisto/patches/patch-src_kseq.h
bacon 0f55c4012d biology/kallisto: Update to 0.48.0
Long awaited bug fix release
Also unbundled htslib
Changes: https://github.com/pachterlab/kallisto/tags
2022-02-27 01:57:27 +00:00

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C

$NetBSD: patch-src_kseq.h,v 1.1 2022/02/27 01:57:27 bacon Exp $
# Unbundle htslib
--- src/kseq.h.orig 2022-02-26 16:37:08.929391121 +0000
+++ src/kseq.h
@@ -27,6 +27,8 @@ SOFTWARE.
#include <ctype.h>
#include <string.h>
#include <stdlib.h>
+// Prevent redefinition of kstring_t below
+#include <htslib/kstring.h>
#define KS_SEP_SPACE 0 // isspace(): \t, \n, \v, \f, \r
#define KS_SEP_TAB 1 // isspace() && !' '