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pkgsrc/math/stan-math/PLIST
wen a30663e530 Update to 2.18.1 
Upstream changes:
v.2.18.1 (24 December 2018)
======================================================================
Bugfix release - major bug in threading where certain thread count and
job size combinations could result in incorrect output. See
https://discourse.mc-stan.org/t/bug-in-map-rect-with-threading-in-stan-2-18-0/7056
for more details.

Bug Fixes
--------------------------------------------------
* Fix threading batch size bug (#1075)

v.2.18.0 (13 July 2018)
======================================================================
This is our first release with parallelism (through C++11 threads or MPI)!

New Features
--------------------------------------------------
* Support for MPI parallelization with map_rect
* Support for threaded AD and a threaded map_rect implementation (#809)
* New periodic covariance function (#921)
* Integrated Boost's 1 dimensional integrator (#913)
* Added thin QR decomposition (#900)
* New `add_diag` function for adding a real or vector to the diagonal of a matrix (#871)
* New `log_inv_logit_diff` function for the log of the difference of two inverse logits (#856)
* New dot product kernel for GPs (#834)
* Vectorized many more RNGs (#833, #722, #622)
* Add `matrix_exp_action` to calculate `exp(At)*B` (#830)
* `log_mix` vectorized (#751, #664)
* New integrators from CVODES (`integrate_ode_adams`, `_bdf`) (#735)
* New `std_normal` (#609)
* New `std_normal_log` (#728)
* New GLM primitive `normal_id_glm` (#665)
* New `chol2inv` that computes a matrix's inverse from its Cholesky factor (#649)
* New `poisson_log_glm` poisson regression with log link (#647)
* New vectorized `ordered_probit` (#645)
* New `log_modified_bessel_first_kind` that expands where Bessel 1 function can be used (#640)
* New bernoulli logit GLM (#608)

Bug Fixes
--------------------------------------------------
* Rising and falling factorial were not accepting negative arguments (#636)
* Fix normalizing constant for LKJ distribution (#628)

Other
--------------------------------------------------
* Tweaks to `effective_sample_size` for performance and upstream compatibility (#865)
* Switch to sundials package combining CVODES and IDAS, updating versions (#779, #744)
* Now publishing the Math doxygen (http://mc-stan.org/math/)
* Faster `dirichlet_lpdf` accepting more vector types (#788)
* Upgrade to Boost 1.66 (#766)
* Improved derivatives for Gamma CDF (#780)
* Sped up `multi_normal_cholesky` (#753)
* More efficient `mdivide_right_tri` (#715)
* More efficient `integrate_ode_rk45_grad_test` (#714)
* Make algebraic solver easier to use (#703, #697)
* Begin thinking about internal compatibility for complex numbers (#643)
* Faster `pow` (#642)
2019-03-10 02:33:05 +00:00

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@comment $NetBSD: PLIST,v 1.2 2019/03/10 02:33:05 wen Exp $
include/stan/math.hpp
include/stan/math/fwd/arr.hpp
include/stan/math/fwd/arr/fun/log_sum_exp.hpp
include/stan/math/fwd/arr/fun/sum.hpp
include/stan/math/fwd/arr/fun/to_fvar.hpp
include/stan/math/fwd/core.hpp
include/stan/math/fwd/core/fvar.hpp
include/stan/math/fwd/core/operator_addition.hpp
include/stan/math/fwd/core/operator_division.hpp
include/stan/math/fwd/core/operator_equal.hpp
include/stan/math/fwd/core/operator_greater_than.hpp
include/stan/math/fwd/core/operator_greater_than_or_equal.hpp
include/stan/math/fwd/core/operator_less_than.hpp
include/stan/math/fwd/core/operator_less_than_or_equal.hpp
include/stan/math/fwd/core/operator_logical_and.hpp
include/stan/math/fwd/core/operator_logical_or.hpp
include/stan/math/fwd/core/operator_multiplication.hpp
include/stan/math/fwd/core/operator_not_equal.hpp
include/stan/math/fwd/core/operator_subtraction.hpp
include/stan/math/fwd/core/operator_unary_minus.hpp
include/stan/math/fwd/core/operator_unary_not.hpp
include/stan/math/fwd/core/operator_unary_plus.hpp
include/stan/math/fwd/core/std_numeric_limits.hpp
include/stan/math/fwd/mat.hpp
include/stan/math/fwd/mat/fun/Eigen_NumTraits.hpp
include/stan/math/fwd/mat/fun/columns_dot_product.hpp
include/stan/math/fwd/mat/fun/columns_dot_self.hpp
include/stan/math/fwd/mat/fun/crossprod.hpp
include/stan/math/fwd/mat/fun/determinant.hpp
include/stan/math/fwd/mat/fun/divide.hpp
include/stan/math/fwd/mat/fun/dot_product.hpp
include/stan/math/fwd/mat/fun/dot_self.hpp
include/stan/math/fwd/mat/fun/inverse.hpp
include/stan/math/fwd/mat/fun/log_determinant.hpp
include/stan/math/fwd/mat/fun/log_softmax.hpp
include/stan/math/fwd/mat/fun/log_sum_exp.hpp
include/stan/math/fwd/mat/fun/mdivide_left.hpp
include/stan/math/fwd/mat/fun/mdivide_left_ldlt.hpp
include/stan/math/fwd/mat/fun/mdivide_left_tri_low.hpp
include/stan/math/fwd/mat/fun/mdivide_right.hpp
include/stan/math/fwd/mat/fun/mdivide_right_tri_low.hpp
include/stan/math/fwd/mat/fun/multiply.hpp
include/stan/math/fwd/mat/fun/multiply_lower_tri_self_transpose.hpp
include/stan/math/fwd/mat/fun/qr_Q.hpp
include/stan/math/fwd/mat/fun/qr_R.hpp
include/stan/math/fwd/mat/fun/quad_form_sym.hpp
include/stan/math/fwd/mat/fun/rows_dot_product.hpp
include/stan/math/fwd/mat/fun/rows_dot_self.hpp
include/stan/math/fwd/mat/fun/softmax.hpp
include/stan/math/fwd/mat/fun/squared_distance.hpp
include/stan/math/fwd/mat/fun/sum.hpp
include/stan/math/fwd/mat/fun/tcrossprod.hpp
include/stan/math/fwd/mat/fun/to_fvar.hpp
include/stan/math/fwd/mat/fun/trace_gen_quad_form.hpp
include/stan/math/fwd/mat/fun/trace_quad_form.hpp
include/stan/math/fwd/mat/fun/typedefs.hpp
include/stan/math/fwd/mat/fun/unit_vector_constrain.hpp
include/stan/math/fwd/mat/functor/gradient.hpp
include/stan/math/fwd/mat/functor/hessian.hpp
include/stan/math/fwd/mat/functor/jacobian.hpp
include/stan/math/fwd/mat/meta/operands_and_partials.hpp
include/stan/math/fwd/mat/vectorize/apply_scalar_unary.hpp
include/stan/math/fwd/scal.hpp
include/stan/math/fwd/scal/fun/Phi.hpp
include/stan/math/fwd/scal/fun/Phi_approx.hpp
include/stan/math/fwd/scal/fun/abs.hpp
include/stan/math/fwd/scal/fun/acos.hpp
include/stan/math/fwd/scal/fun/acosh.hpp
include/stan/math/fwd/scal/fun/asin.hpp
include/stan/math/fwd/scal/fun/asinh.hpp
include/stan/math/fwd/scal/fun/atan.hpp
include/stan/math/fwd/scal/fun/atan2.hpp
include/stan/math/fwd/scal/fun/atanh.hpp
include/stan/math/fwd/scal/fun/bessel_first_kind.hpp
include/stan/math/fwd/scal/fun/bessel_second_kind.hpp
include/stan/math/fwd/scal/fun/binary_log_loss.hpp
include/stan/math/fwd/scal/fun/binomial_coefficient_log.hpp
include/stan/math/fwd/scal/fun/cbrt.hpp
include/stan/math/fwd/scal/fun/ceil.hpp
include/stan/math/fwd/scal/fun/cos.hpp
include/stan/math/fwd/scal/fun/cosh.hpp
include/stan/math/fwd/scal/fun/digamma.hpp
include/stan/math/fwd/scal/fun/erf.hpp
include/stan/math/fwd/scal/fun/erfc.hpp
include/stan/math/fwd/scal/fun/exp.hpp
include/stan/math/fwd/scal/fun/exp2.hpp
include/stan/math/fwd/scal/fun/expm1.hpp
include/stan/math/fwd/scal/fun/fabs.hpp
include/stan/math/fwd/scal/fun/falling_factorial.hpp
include/stan/math/fwd/scal/fun/fdim.hpp
include/stan/math/fwd/scal/fun/floor.hpp
include/stan/math/fwd/scal/fun/fma.hpp
include/stan/math/fwd/scal/fun/fmax.hpp
include/stan/math/fwd/scal/fun/fmin.hpp
include/stan/math/fwd/scal/fun/fmod.hpp
include/stan/math/fwd/scal/fun/gamma_p.hpp
include/stan/math/fwd/scal/fun/gamma_q.hpp
include/stan/math/fwd/scal/fun/grad_inc_beta.hpp
include/stan/math/fwd/scal/fun/hypot.hpp
include/stan/math/fwd/scal/fun/inc_beta.hpp
include/stan/math/fwd/scal/fun/inv.hpp
include/stan/math/fwd/scal/fun/inv_Phi.hpp
include/stan/math/fwd/scal/fun/inv_cloglog.hpp
include/stan/math/fwd/scal/fun/inv_logit.hpp
include/stan/math/fwd/scal/fun/inv_sqrt.hpp
include/stan/math/fwd/scal/fun/inv_square.hpp
include/stan/math/fwd/scal/fun/is_inf.hpp
include/stan/math/fwd/scal/fun/is_nan.hpp
include/stan/math/fwd/scal/fun/lbeta.hpp
include/stan/math/fwd/scal/fun/lgamma.hpp
include/stan/math/fwd/scal/fun/lmgamma.hpp
include/stan/math/fwd/scal/fun/log.hpp
include/stan/math/fwd/scal/fun/log10.hpp
include/stan/math/fwd/scal/fun/log1m.hpp
include/stan/math/fwd/scal/fun/log1m_exp.hpp
include/stan/math/fwd/scal/fun/log1m_inv_logit.hpp
include/stan/math/fwd/scal/fun/log1p.hpp
include/stan/math/fwd/scal/fun/log1p_exp.hpp
include/stan/math/fwd/scal/fun/log2.hpp
include/stan/math/fwd/scal/fun/log_diff_exp.hpp
include/stan/math/fwd/scal/fun/log_falling_factorial.hpp
include/stan/math/fwd/scal/fun/log_inv_logit.hpp
include/stan/math/fwd/scal/fun/log_inv_logit_diff.hpp
include/stan/math/fwd/scal/fun/log_mix.hpp
include/stan/math/fwd/scal/fun/log_rising_factorial.hpp
include/stan/math/fwd/scal/fun/log_sum_exp.hpp
include/stan/math/fwd/scal/fun/logit.hpp
include/stan/math/fwd/scal/fun/modified_bessel_first_kind.hpp
include/stan/math/fwd/scal/fun/modified_bessel_second_kind.hpp
include/stan/math/fwd/scal/fun/multiply_log.hpp
include/stan/math/fwd/scal/fun/owens_t.hpp
include/stan/math/fwd/scal/fun/pow.hpp
include/stan/math/fwd/scal/fun/primitive_value.hpp
include/stan/math/fwd/scal/fun/rising_factorial.hpp
include/stan/math/fwd/scal/fun/round.hpp
include/stan/math/fwd/scal/fun/sin.hpp
include/stan/math/fwd/scal/fun/sinh.hpp
include/stan/math/fwd/scal/fun/sqrt.hpp
include/stan/math/fwd/scal/fun/square.hpp
include/stan/math/fwd/scal/fun/tan.hpp
include/stan/math/fwd/scal/fun/tanh.hpp
include/stan/math/fwd/scal/fun/tgamma.hpp
include/stan/math/fwd/scal/fun/to_fvar.hpp
include/stan/math/fwd/scal/fun/trigamma.hpp
include/stan/math/fwd/scal/fun/trunc.hpp
include/stan/math/fwd/scal/fun/value_of.hpp
include/stan/math/fwd/scal/fun/value_of_rec.hpp
include/stan/math/fwd/scal/meta/ad_promotable.hpp
include/stan/math/fwd/scal/meta/is_fvar.hpp
include/stan/math/fwd/scal/meta/operands_and_partials.hpp
include/stan/math/fwd/scal/meta/partials_type.hpp
include/stan/math/gpu/err/check_diagonal_zeros.hpp
include/stan/math/gpu/err/check_matching_dims.hpp
include/stan/math/gpu/err/check_nan.hpp
include/stan/math/gpu/err/check_square.hpp
include/stan/math/gpu/err/check_symmetric.hpp
include/stan/math/gpu/kernels/check_diagonal_zeros_kernel.cl
include/stan/math/gpu/kernels/check_nan_kernel.cl
include/stan/math/gpu/kernels/check_symmetric_kernel.cl
include/stan/math/gpu/kernels/copy_matrix_kernel.cl
include/stan/math/gpu/matrix_gpu.hpp
include/stan/math/gpu/opencl_context.hpp
include/stan/math/memory/stack_alloc.hpp
include/stan/math/mix/arr.hpp
include/stan/math/mix/mat.hpp
include/stan/math/mix/mat/fun/typedefs.hpp
include/stan/math/mix/mat/functor/derivative.hpp
include/stan/math/mix/mat/functor/finite_diff_grad_hessian.hpp
include/stan/math/mix/mat/functor/grad_hessian.hpp
include/stan/math/mix/mat/functor/grad_tr_mat_times_hessian.hpp
include/stan/math/mix/mat/functor/gradient_dot_vector.hpp
include/stan/math/mix/mat/functor/hessian.hpp
include/stan/math/mix/mat/functor/hessian_times_vector.hpp
include/stan/math/mix/mat/functor/partial_derivative.hpp
include/stan/math/mix/scal.hpp
include/stan/math/prim/arr.hpp
include/stan/math/prim/arr/err/check_matching_sizes.hpp
include/stan/math/prim/arr/err/check_nonzero_size.hpp
include/stan/math/prim/arr/err/check_opencl.hpp
include/stan/math/prim/arr/err/check_ordered.hpp
include/stan/math/prim/arr/fun/array_builder.hpp
include/stan/math/prim/arr/fun/common_type.hpp
include/stan/math/prim/arr/fun/dot.hpp
include/stan/math/prim/arr/fun/dot_self.hpp
include/stan/math/prim/arr/fun/fill.hpp
include/stan/math/prim/arr/fun/inverse_softmax.hpp
include/stan/math/prim/arr/fun/log_sum_exp.hpp
include/stan/math/prim/arr/fun/promote_elements.hpp
include/stan/math/prim/arr/fun/promote_scalar.hpp
include/stan/math/prim/arr/fun/promote_scalar_type.hpp
include/stan/math/prim/arr/fun/rep_array.hpp
include/stan/math/prim/arr/fun/scaled_add.hpp
include/stan/math/prim/arr/fun/sort_asc.hpp
include/stan/math/prim/arr/fun/sort_desc.hpp
include/stan/math/prim/arr/fun/sub.hpp
include/stan/math/prim/arr/fun/sum.hpp
include/stan/math/prim/arr/fun/value_of.hpp
include/stan/math/prim/arr/fun/value_of_rec.hpp
include/stan/math/prim/arr/functor/coupled_ode_observer.hpp
include/stan/math/prim/arr/functor/coupled_ode_system.hpp
include/stan/math/prim/arr/functor/integrate_1d.hpp
include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp
include/stan/math/prim/arr/functor/mpi_cluster.hpp
include/stan/math/prim/arr/functor/mpi_cluster_inst.cpp
include/stan/math/prim/arr/functor/mpi_command.hpp
include/stan/math/prim/arr/functor/mpi_distributed_apply.hpp
include/stan/math/prim/arr/meta/VectorBuilderHelper.hpp
include/stan/math/prim/arr/meta/contains_std_vector.hpp
include/stan/math/prim/arr/meta/get.hpp
include/stan/math/prim/arr/meta/index_type.hpp
include/stan/math/prim/arr/meta/is_constant_struct.hpp
include/stan/math/prim/arr/meta/is_std_vector.hpp
include/stan/math/prim/arr/meta/is_vector.hpp
include/stan/math/prim/arr/meta/length.hpp
include/stan/math/prim/arr/meta/scalar_type.hpp
include/stan/math/prim/arr/meta/value_type.hpp
include/stan/math/prim/mat.hpp
include/stan/math/prim/mat/err/check_cholesky_factor.hpp
include/stan/math/prim/mat/err/check_cholesky_factor_corr.hpp
include/stan/math/prim/mat/err/check_column_index.hpp
include/stan/math/prim/mat/err/check_corr_matrix.hpp
include/stan/math/prim/mat/err/check_cov_matrix.hpp
include/stan/math/prim/mat/err/check_ldlt_factor.hpp
include/stan/math/prim/mat/err/check_lower_triangular.hpp
include/stan/math/prim/mat/err/check_matching_dims.hpp
include/stan/math/prim/mat/err/check_multiplicable.hpp
include/stan/math/prim/mat/err/check_ordered.hpp
include/stan/math/prim/mat/err/check_pos_definite.hpp
include/stan/math/prim/mat/err/check_pos_semidefinite.hpp
include/stan/math/prim/mat/err/check_positive_ordered.hpp
include/stan/math/prim/mat/err/check_range.hpp
include/stan/math/prim/mat/err/check_row_index.hpp
include/stan/math/prim/mat/err/check_simplex.hpp
include/stan/math/prim/mat/err/check_spsd_matrix.hpp
include/stan/math/prim/mat/err/check_square.hpp
include/stan/math/prim/mat/err/check_std_vector_index.hpp
include/stan/math/prim/mat/err/check_symmetric.hpp
include/stan/math/prim/mat/err/check_unit_vector.hpp
include/stan/math/prim/mat/err/check_vector.hpp
include/stan/math/prim/mat/err/constraint_tolerance.hpp
include/stan/math/prim/mat/err/validate_non_negative_index.hpp
include/stan/math/prim/mat/fun/Eigen.hpp
include/stan/math/prim/mat/fun/LDLT_factor.hpp
include/stan/math/prim/mat/fun/MatrixExponential.h
include/stan/math/prim/mat/fun/Phi.hpp
include/stan/math/prim/mat/fun/Phi_approx.hpp
include/stan/math/prim/mat/fun/accumulator.hpp
include/stan/math/prim/mat/fun/acos.hpp
include/stan/math/prim/mat/fun/acosh.hpp
include/stan/math/prim/mat/fun/add.hpp
include/stan/math/prim/mat/fun/add_diag.hpp
include/stan/math/prim/mat/fun/append_array.hpp
include/stan/math/prim/mat/fun/append_col.hpp
include/stan/math/prim/mat/fun/append_row.hpp
include/stan/math/prim/mat/fun/asin.hpp
include/stan/math/prim/mat/fun/asinh.hpp
include/stan/math/prim/mat/fun/assign.hpp
include/stan/math/prim/mat/fun/atan.hpp
include/stan/math/prim/mat/fun/atanh.hpp
include/stan/math/prim/mat/fun/autocorrelation.hpp
include/stan/math/prim/mat/fun/autocovariance.hpp
include/stan/math/prim/mat/fun/block.hpp
include/stan/math/prim/mat/fun/cbrt.hpp
include/stan/math/prim/mat/fun/ceil.hpp
include/stan/math/prim/mat/fun/chol2inv.hpp
include/stan/math/prim/mat/fun/cholesky_corr_constrain.hpp
include/stan/math/prim/mat/fun/cholesky_corr_free.hpp
include/stan/math/prim/mat/fun/cholesky_decompose.hpp
include/stan/math/prim/mat/fun/cholesky_factor_constrain.hpp
include/stan/math/prim/mat/fun/cholesky_factor_free.hpp
include/stan/math/prim/mat/fun/col.hpp
include/stan/math/prim/mat/fun/cols.hpp
include/stan/math/prim/mat/fun/columns_dot_product.hpp
include/stan/math/prim/mat/fun/columns_dot_self.hpp
include/stan/math/prim/mat/fun/common_type.hpp
include/stan/math/prim/mat/fun/corr_matrix_constrain.hpp
include/stan/math/prim/mat/fun/corr_matrix_free.hpp
include/stan/math/prim/mat/fun/cos.hpp
include/stan/math/prim/mat/fun/cosh.hpp
include/stan/math/prim/mat/fun/cov_exp_quad.hpp
include/stan/math/prim/mat/fun/cov_matrix_constrain.hpp
include/stan/math/prim/mat/fun/cov_matrix_constrain_lkj.hpp
include/stan/math/prim/mat/fun/cov_matrix_free.hpp
include/stan/math/prim/mat/fun/cov_matrix_free_lkj.hpp
include/stan/math/prim/mat/fun/crossprod.hpp
include/stan/math/prim/mat/fun/csr_extract_u.hpp
include/stan/math/prim/mat/fun/csr_extract_v.hpp
include/stan/math/prim/mat/fun/csr_extract_w.hpp
include/stan/math/prim/mat/fun/csr_matrix_times_vector.hpp
include/stan/math/prim/mat/fun/csr_to_dense_matrix.hpp
include/stan/math/prim/mat/fun/csr_u_to_z.hpp
include/stan/math/prim/mat/fun/cumulative_sum.hpp
include/stan/math/prim/mat/fun/determinant.hpp
include/stan/math/prim/mat/fun/diag_matrix.hpp
include/stan/math/prim/mat/fun/diag_post_multiply.hpp
include/stan/math/prim/mat/fun/diag_pre_multiply.hpp
include/stan/math/prim/mat/fun/diagonal.hpp
include/stan/math/prim/mat/fun/digamma.hpp
include/stan/math/prim/mat/fun/dims.hpp
include/stan/math/prim/mat/fun/distance.hpp
include/stan/math/prim/mat/fun/divide.hpp
include/stan/math/prim/mat/fun/dot_product.hpp
include/stan/math/prim/mat/fun/dot_self.hpp
include/stan/math/prim/mat/fun/eigenvalues_sym.hpp
include/stan/math/prim/mat/fun/eigenvectors_sym.hpp
include/stan/math/prim/mat/fun/elt_divide.hpp
include/stan/math/prim/mat/fun/elt_multiply.hpp
include/stan/math/prim/mat/fun/erf.hpp
include/stan/math/prim/mat/fun/erfc.hpp
include/stan/math/prim/mat/fun/exp.hpp
include/stan/math/prim/mat/fun/exp2.hpp
include/stan/math/prim/mat/fun/expm1.hpp
include/stan/math/prim/mat/fun/fabs.hpp
include/stan/math/prim/mat/fun/factor_U.hpp
include/stan/math/prim/mat/fun/factor_cov_matrix.hpp
include/stan/math/prim/mat/fun/fill.hpp
include/stan/math/prim/mat/fun/floor.hpp
include/stan/math/prim/mat/fun/get_base1.hpp
include/stan/math/prim/mat/fun/get_base1_lhs.hpp
include/stan/math/prim/mat/fun/get_lp.hpp
include/stan/math/prim/mat/fun/gp_dot_prod_cov.hpp
include/stan/math/prim/mat/fun/gp_periodic_cov.hpp
include/stan/math/prim/mat/fun/head.hpp
include/stan/math/prim/mat/fun/initialize.hpp
include/stan/math/prim/mat/fun/inv.hpp
include/stan/math/prim/mat/fun/inv_Phi.hpp
include/stan/math/prim/mat/fun/inv_cloglog.hpp
include/stan/math/prim/mat/fun/inv_logit.hpp
include/stan/math/prim/mat/fun/inv_sqrt.hpp
include/stan/math/prim/mat/fun/inv_square.hpp
include/stan/math/prim/mat/fun/inverse.hpp
include/stan/math/prim/mat/fun/inverse_spd.hpp
include/stan/math/prim/mat/fun/lgamma.hpp
include/stan/math/prim/mat/fun/log.hpp
include/stan/math/prim/mat/fun/log10.hpp
include/stan/math/prim/mat/fun/log1m.hpp
include/stan/math/prim/mat/fun/log1m_exp.hpp
include/stan/math/prim/mat/fun/log1m_inv_logit.hpp
include/stan/math/prim/mat/fun/log1p.hpp
include/stan/math/prim/mat/fun/log1p_exp.hpp
include/stan/math/prim/mat/fun/log2.hpp
include/stan/math/prim/mat/fun/log_determinant.hpp
include/stan/math/prim/mat/fun/log_determinant_ldlt.hpp
include/stan/math/prim/mat/fun/log_determinant_spd.hpp
include/stan/math/prim/mat/fun/log_inv_logit.hpp
include/stan/math/prim/mat/fun/log_mix.hpp
include/stan/math/prim/mat/fun/log_softmax.hpp
include/stan/math/prim/mat/fun/log_sum_exp.hpp
include/stan/math/prim/mat/fun/logit.hpp
include/stan/math/prim/mat/fun/make_nu.hpp
include/stan/math/prim/mat/fun/matrix_exp.hpp
include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp
include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp
include/stan/math/prim/mat/fun/matrix_exp_multiply.hpp
include/stan/math/prim/mat/fun/matrix_exp_pade.hpp
include/stan/math/prim/mat/fun/max.hpp
include/stan/math/prim/mat/fun/mdivide_left.hpp
include/stan/math/prim/mat/fun/mdivide_left_ldlt.hpp
include/stan/math/prim/mat/fun/mdivide_left_spd.hpp
include/stan/math/prim/mat/fun/mdivide_left_tri.hpp
include/stan/math/prim/mat/fun/mdivide_left_tri_low.hpp
include/stan/math/prim/mat/fun/mdivide_right.hpp
include/stan/math/prim/mat/fun/mdivide_right_ldlt.hpp
include/stan/math/prim/mat/fun/mdivide_right_spd.hpp
include/stan/math/prim/mat/fun/mdivide_right_tri.hpp
include/stan/math/prim/mat/fun/mdivide_right_tri_low.hpp
include/stan/math/prim/mat/fun/mean.hpp
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include/stan/math/prim/mat/fun/multiply.hpp
include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp
include/stan/math/prim/mat/fun/num_elements.hpp
include/stan/math/prim/mat/fun/opencl_copy.hpp
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include/stan/math/prim/mat/fun/promote_common.hpp
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include/stan/math/prim/mat/fun/promote_scalar.hpp
include/stan/math/prim/mat/fun/promote_scalar_type.hpp
include/stan/math/prim/mat/fun/qr_Q.hpp
include/stan/math/prim/mat/fun/qr_R.hpp
include/stan/math/prim/mat/fun/qr_thin_Q.hpp
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include/stan/math/prim/mat/fun/quad_form.hpp
include/stan/math/prim/mat/fun/quad_form_diag.hpp
include/stan/math/prim/mat/fun/quad_form_sym.hpp
include/stan/math/prim/mat/fun/rank.hpp
include/stan/math/prim/mat/fun/read_corr_L.hpp
include/stan/math/prim/mat/fun/read_corr_matrix.hpp
include/stan/math/prim/mat/fun/read_cov_L.hpp
include/stan/math/prim/mat/fun/read_cov_matrix.hpp
include/stan/math/prim/mat/fun/rep_matrix.hpp
include/stan/math/prim/mat/fun/rep_row_vector.hpp
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include/stan/math/prim/mat/fun/resize.hpp
include/stan/math/prim/mat/fun/round.hpp
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include/stan/math/prim/mat/fun/rows.hpp
include/stan/math/prim/mat/fun/rows_dot_product.hpp
include/stan/math/prim/mat/fun/rows_dot_self.hpp
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include/stan/math/prim/mat/fun/simplex_constrain.hpp
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include/stan/math/prim/mat/fun/sin.hpp
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include/stan/math/prim/mat/fun/tan.hpp
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include/stan/math/prim/mat/fun/to_matrix.hpp
include/stan/math/prim/mat/fun/to_row_vector.hpp
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include/stan/math/prim/mat/fun/trace.hpp
include/stan/math/prim/mat/fun/trace_gen_inv_quad_form_ldlt.hpp
include/stan/math/prim/mat/fun/trace_gen_quad_form.hpp
include/stan/math/prim/mat/fun/trace_inv_quad_form_ldlt.hpp
include/stan/math/prim/mat/fun/trace_quad_form.hpp
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include/stan/math/prim/mat/functor/finite_diff_gradient.hpp
include/stan/math/prim/mat/functor/finite_diff_hessian.hpp
include/stan/math/prim/mat/functor/map_rect.hpp
include/stan/math/prim/mat/functor/map_rect_combine.hpp
include/stan/math/prim/mat/functor/map_rect_concurrent.hpp
include/stan/math/prim/mat/functor/map_rect_mpi.hpp
include/stan/math/prim/mat/functor/map_rect_reduce.hpp
include/stan/math/prim/mat/functor/mpi_parallel_call.hpp
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include/stan/math/prim/mat/meta/operands_and_partials.hpp
include/stan/math/prim/mat/meta/scalar_type.hpp
include/stan/math/prim/mat/meta/seq_view.hpp
include/stan/math/prim/mat/meta/value_type.hpp
include/stan/math/prim/mat/meta/vector_seq_view.hpp
include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp
include/stan/math/prim/mat/prob/categorical_log.hpp
include/stan/math/prim/mat/prob/categorical_logit_log.hpp
include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp
include/stan/math/prim/mat/prob/categorical_logit_rng.hpp
include/stan/math/prim/mat/prob/categorical_lpmf.hpp
include/stan/math/prim/mat/prob/categorical_rng.hpp
include/stan/math/prim/mat/prob/dirichlet_log.hpp
include/stan/math/prim/mat/prob/dirichlet_lpmf.hpp
include/stan/math/prim/mat/prob/dirichlet_rng.hpp
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include/stan/math/prim/mat/prob/gaussian_dlm_obs_lpdf.hpp
include/stan/math/prim/mat/prob/inv_wishart_log.hpp
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include/stan/math/prim/mat/prob/lkj_corr_cholesky_log.hpp
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include/stan/math/prim/mat/prob/lkj_corr_log.hpp
include/stan/math/prim/mat/prob/lkj_corr_lpdf.hpp
include/stan/math/prim/mat/prob/lkj_corr_rng.hpp
include/stan/math/prim/mat/prob/lkj_cov_log.hpp
include/stan/math/prim/mat/prob/lkj_cov_lpdf.hpp
include/stan/math/prim/mat/prob/matrix_normal_prec_log.hpp
include/stan/math/prim/mat/prob/matrix_normal_prec_lpdf.hpp
include/stan/math/prim/mat/prob/multi_gp_cholesky_log.hpp
include/stan/math/prim/mat/prob/multi_gp_cholesky_lpdf.hpp
include/stan/math/prim/mat/prob/multi_gp_log.hpp
include/stan/math/prim/mat/prob/multi_gp_lpdf.hpp
include/stan/math/prim/mat/prob/multi_normal_cholesky_log.hpp
include/stan/math/prim/mat/prob/multi_normal_cholesky_lpdf.hpp
include/stan/math/prim/mat/prob/multi_normal_cholesky_rng.hpp
include/stan/math/prim/mat/prob/multi_normal_log.hpp
include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp
include/stan/math/prim/mat/prob/multi_normal_prec_log.hpp
include/stan/math/prim/mat/prob/multi_normal_prec_lpdf.hpp
include/stan/math/prim/mat/prob/multi_normal_rng.hpp
include/stan/math/prim/mat/prob/multi_student_t_log.hpp
include/stan/math/prim/mat/prob/multi_student_t_lpdf.hpp
include/stan/math/prim/mat/prob/multi_student_t_rng.hpp
include/stan/math/prim/mat/prob/multinomial_log.hpp
include/stan/math/prim/mat/prob/multinomial_lpmf.hpp
include/stan/math/prim/mat/prob/multinomial_rng.hpp
include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp
include/stan/math/prim/mat/prob/normal_id_glm_lpdf.hpp
include/stan/math/prim/mat/prob/ordered_logistic_log.hpp
include/stan/math/prim/mat/prob/ordered_logistic_lpmf.hpp
include/stan/math/prim/mat/prob/ordered_logistic_rng.hpp
include/stan/math/prim/mat/prob/ordered_probit_log.hpp
include/stan/math/prim/mat/prob/ordered_probit_lpmf.hpp
include/stan/math/prim/mat/prob/ordered_probit_rng.hpp
include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp
include/stan/math/prim/mat/prob/wishart_log.hpp
include/stan/math/prim/mat/prob/wishart_lpdf.hpp
include/stan/math/prim/mat/prob/wishart_rng.hpp
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include/stan/math/prim/scal/err/check_finite.hpp
include/stan/math/prim/scal/err/check_greater.hpp
include/stan/math/prim/scal/err/check_greater_or_equal.hpp
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include/stan/math/prim/scal/err/check_less_or_equal.hpp
include/stan/math/prim/scal/err/check_nonnegative.hpp
include/stan/math/prim/scal/err/check_not_nan.hpp
include/stan/math/prim/scal/err/check_positive.hpp
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include/stan/math/prim/scal/err/out_of_range.hpp
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include/stan/math/prim/scal/fun/falling_factorial.hpp
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include/stan/math/prim/scal/fun/inc_beta_ddz.hpp
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include/stan/math/prim/scal/fun/log2.hpp
include/stan/math/prim/scal/fun/log_diff_exp.hpp
include/stan/math/prim/scal/fun/log_falling_factorial.hpp
include/stan/math/prim/scal/fun/log_inv_logit.hpp
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include/stan/math/prim/scal/fun/log_mix.hpp
include/stan/math/prim/scal/fun/log_modified_bessel_first_kind.hpp
include/stan/math/prim/scal/fun/log_rising_factorial.hpp
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include/stan/math/prim/scal/fun/logical_and.hpp
include/stan/math/prim/scal/fun/logical_eq.hpp
include/stan/math/prim/scal/fun/logical_gt.hpp
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include/stan/math/prim/scal/fun/logical_lt.hpp
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include/stan/math/prim/scal/fun/logical_negation.hpp
include/stan/math/prim/scal/fun/logical_neq.hpp
include/stan/math/prim/scal/fun/logical_or.hpp
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include/stan/math/prim/scal/fun/rising_factorial.hpp
include/stan/math/prim/scal/fun/round.hpp
include/stan/math/prim/scal/fun/sign.hpp
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include/stan/math/prim/scal/fun/square.hpp
include/stan/math/prim/scal/fun/squared_distance.hpp
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include/stan/math/prim/scal/fun/tgamma.hpp
include/stan/math/prim/scal/fun/trigamma.hpp
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include/stan/math/prim/scal/fun/value_of.hpp
include/stan/math/prim/scal/fun/value_of_rec.hpp
include/stan/math/prim/scal/meta/StdVectorBuilder.hpp
include/stan/math/prim/scal/meta/VectorBuilder.hpp
include/stan/math/prim/scal/meta/VectorBuilderHelper.hpp
include/stan/math/prim/scal/meta/ad_promotable.hpp
include/stan/math/prim/scal/meta/broadcast_array.hpp
include/stan/math/prim/scal/meta/child_type.hpp
include/stan/math/prim/scal/meta/contains_fvar.hpp
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include/stan/math/prim/scal/meta/return_type.hpp
include/stan/math/prim/scal/meta/scalar_seq_view.hpp
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include/stan/math/prim/scal/meta/size_of.hpp
include/stan/math/prim/scal/meta/value_type.hpp
include/stan/math/prim/scal/prob/bernoulli_ccdf_log.hpp
include/stan/math/prim/scal/prob/bernoulli_cdf.hpp
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include/stan/math/prim/scal/prob/bernoulli_lccdf.hpp
include/stan/math/prim/scal/prob/bernoulli_lcdf.hpp
include/stan/math/prim/scal/prob/bernoulli_log.hpp
include/stan/math/prim/scal/prob/bernoulli_logit_log.hpp
include/stan/math/prim/scal/prob/bernoulli_logit_lpmf.hpp
include/stan/math/prim/scal/prob/bernoulli_logit_rng.hpp
include/stan/math/prim/scal/prob/bernoulli_lpmf.hpp
include/stan/math/prim/scal/prob/bernoulli_rng.hpp
include/stan/math/prim/scal/prob/beta_binomial_ccdf_log.hpp
include/stan/math/prim/scal/prob/beta_binomial_cdf.hpp
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include/stan/math/prim/scal/prob/beta_binomial_lccdf.hpp
include/stan/math/prim/scal/prob/beta_binomial_lcdf.hpp
include/stan/math/prim/scal/prob/beta_binomial_log.hpp
include/stan/math/prim/scal/prob/beta_binomial_lpmf.hpp
include/stan/math/prim/scal/prob/beta_binomial_rng.hpp
include/stan/math/prim/scal/prob/beta_ccdf_log.hpp
include/stan/math/prim/scal/prob/beta_cdf.hpp
include/stan/math/prim/scal/prob/beta_cdf_log.hpp
include/stan/math/prim/scal/prob/beta_lccdf.hpp
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include/stan/math/prim/scal/prob/beta_log.hpp
include/stan/math/prim/scal/prob/beta_lpdf.hpp
include/stan/math/prim/scal/prob/beta_rng.hpp
include/stan/math/prim/scal/prob/binomial_ccdf_log.hpp
include/stan/math/prim/scal/prob/binomial_cdf.hpp
include/stan/math/prim/scal/prob/binomial_cdf_log.hpp
include/stan/math/prim/scal/prob/binomial_lccdf.hpp
include/stan/math/prim/scal/prob/binomial_lcdf.hpp
include/stan/math/prim/scal/prob/binomial_log.hpp
include/stan/math/prim/scal/prob/binomial_logit_log.hpp
include/stan/math/prim/scal/prob/binomial_logit_lpmf.hpp
include/stan/math/prim/scal/prob/binomial_lpmf.hpp
include/stan/math/prim/scal/prob/binomial_rng.hpp
include/stan/math/prim/scal/prob/cauchy_ccdf_log.hpp
include/stan/math/prim/scal/prob/cauchy_cdf.hpp
include/stan/math/prim/scal/prob/cauchy_cdf_log.hpp
include/stan/math/prim/scal/prob/cauchy_lccdf.hpp
include/stan/math/prim/scal/prob/cauchy_lcdf.hpp
include/stan/math/prim/scal/prob/cauchy_log.hpp
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include/stan/math/rev/scal/fun/log.hpp
include/stan/math/rev/scal/fun/log10.hpp
include/stan/math/rev/scal/fun/log1m.hpp
include/stan/math/rev/scal/fun/log1m_exp.hpp
include/stan/math/rev/scal/fun/log1m_inv_logit.hpp
include/stan/math/rev/scal/fun/log1p.hpp
include/stan/math/rev/scal/fun/log1p_exp.hpp
include/stan/math/rev/scal/fun/log2.hpp
include/stan/math/rev/scal/fun/log_diff_exp.hpp
include/stan/math/rev/scal/fun/log_falling_factorial.hpp
include/stan/math/rev/scal/fun/log_inv_logit.hpp
include/stan/math/rev/scal/fun/log_inv_logit_diff.hpp
include/stan/math/rev/scal/fun/log_mix.hpp
include/stan/math/rev/scal/fun/log_rising_factorial.hpp
include/stan/math/rev/scal/fun/log_sum_exp.hpp
include/stan/math/rev/scal/fun/logit.hpp
include/stan/math/rev/scal/fun/modified_bessel_first_kind.hpp
include/stan/math/rev/scal/fun/modified_bessel_second_kind.hpp
include/stan/math/rev/scal/fun/multiply_log.hpp
include/stan/math/rev/scal/fun/owens_t.hpp
include/stan/math/rev/scal/fun/pow.hpp
include/stan/math/rev/scal/fun/primitive_value.hpp
include/stan/math/rev/scal/fun/rising_factorial.hpp
include/stan/math/rev/scal/fun/round.hpp
include/stan/math/rev/scal/fun/sin.hpp
include/stan/math/rev/scal/fun/sinh.hpp
include/stan/math/rev/scal/fun/sqrt.hpp
include/stan/math/rev/scal/fun/square.hpp
include/stan/math/rev/scal/fun/squared_distance.hpp
include/stan/math/rev/scal/fun/step.hpp
include/stan/math/rev/scal/fun/tan.hpp
include/stan/math/rev/scal/fun/tanh.hpp
include/stan/math/rev/scal/fun/tgamma.hpp
include/stan/math/rev/scal/fun/to_var.hpp
include/stan/math/rev/scal/fun/trigamma.hpp
include/stan/math/rev/scal/fun/trunc.hpp
include/stan/math/rev/scal/fun/value_of.hpp
include/stan/math/rev/scal/fun/value_of_rec.hpp
include/stan/math/rev/scal/meta/ad_promotable.hpp
include/stan/math/rev/scal/meta/is_var.hpp
include/stan/math/rev/scal/meta/operands_and_partials.hpp
include/stan/math/rev/scal/meta/partials_type.hpp
include/stan/math/version.hpp
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