cb1a7273b2
Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data. The selection of trimming steps and their associated parameters are supplied on the command line. It works with FASTQ (using phred + 33 or phred + 64 quality scores, depending on the Illumina pipeline used), either uncompressed or gzipp'ed FASTQ.
28 lines
726 B
Makefile
28 lines
726 B
Makefile
# $NetBSD: Makefile,v 1.1 2018/07/25 15:14:32 bacon Exp $
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DISTNAME= Trimmomatic-${PV}
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CATEGORIES= biology
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MASTER_SITES= http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/
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EXTRACT_SUFX= .zip
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= http://www.usadellab.org/cms/?page=trimmomatic
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COMMENT= Flexible read trimming tool for Illumina NGS data
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LICENSE= gnu-gpl-v3
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USE_TOOLS+= pax
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USE_JAVA= run
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NO_BUILD= yes
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WRKSRC= ${WRKDIR}/Trimmomatic-${PV}
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INSTALLATION_DIRS= lib/java share/trimmomatic
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PV= 0.38
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do-install:
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${INSTALL_DATA} ${WRKSRC}/trimmomatic-${PV}.jar \
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${DESTDIR}${PREFIX}/lib/java/trimmomatic.jar
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cd ${WRKSRC} && pax -rw adapters ${DESTDIR}${PREFIX}/share/trimmomatic
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.include "../../mk/bsd.pkg.mk"
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