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brook c2288fd3db biology/minimap2: install minimap2 program instead of python binding 
The distfile for minimap2 includes two different components: (i) the
minimap2 sequence mapping program itself, and (ii) a python binding
generally referred to as mappy.  The initial version of this package
included only the python binding.  However, it is more appropriate
that the minimap2 package should contain the program of the same name,
and a new package be created with the name mappy for the python
binding.  Splitting these into two packages makes sense, because this
allows users to install the minimap2 package without python
dependencies.
2021-05-29 17:35:18 +00:00
..
ad2vcf biology/ad2vcf: import ad2vcf-0.1.2 2021-03-24 18:19:21 +00:00
arka biology/arka: document 2 instances of char as array index 2020-05-03 14:58:18 +00:00
azara *: recursive bump for libffi 2020-03-08 16:47:24 +00:00
bcftools *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
beagle biology/beagle: added beagle 5.2 2021-05-26 19:13:39 +00:00
bedtools biology/bedtools: Update to 2.30.0 2021-02-08 01:49:25 +00:00
biolibc biology/biolibc: import biolibc-0.1.1 2021-03-24 15:20:08 +00:00
bioperl *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
bodr *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
bowtie2 *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
bwa *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
canu *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
cdhit *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool *: revbump after fontconfig bl3 changes (libuuid removal) 2020-08-17 20:17:15 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce *: remove dead download locations 2021-04-21 09:12:23 +00:00
coordgenlibs revbump for boost-libs 2021-04-21 13:24:06 +00:00
fastDNAml *: remove dead download location 2021-04-21 09:11:13 +00:00
fastp biology/fastp: document possible array[char] bug 2020-05-25 05:18:35 +00:00
fastqc *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
filter-fastq biology/filter-fastq: add filter-fastq version 0.0.0.20210527 2021-05-27 17:11:42 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit *: revbump after fontconfig bl3 changes (libuuid removal) 2020-08-17 20:17:15 +00:00
generand biology/generand: import generand-0.1.2 2021-03-21 14:23:46 +00:00
genesplicer
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
gp all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
gromacs *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
hisat2 *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
hmmer
htslib *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
igv biology/igv: import igv-2.9.2 2021-02-24 13:54:25 +00:00
kallisto kallisto: remove patches that were removed from distinfo during update 2020-07-30 07:59:19 +00:00
lucy mark packages that fail with -Werror=char-subscripts 2020-05-20 06:09:03 +00:00
maeparser revbump for boost-libs 2021-04-21 13:24:06 +00:00
miniasm biology/miniasm: add miniasm 0.3 2021-05-26 18:44:44 +00:00
minimap2 biology/minimap2: install minimap2 program instead of python binding 2021-05-29 17:35:18 +00:00
molsketch revbump for textproc/icu 2021-04-21 11:40:12 +00:00
mopac
mpqc *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
mummer *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
ncbi-blast+ *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
nut all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
openbabel revbump for boost-libs 2021-04-21 13:24:06 +00:00
p5-Bio-ASN1-EntrezGene *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
pdbalign
phylip *: remove dead download locations 2021-04-21 09:12:23 +00:00
plink math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
plinkseq Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
primer3 *: Convert broken sourceforge HOMEPAGEs back to http 2020-03-20 11:57:22 +00:00
profit
puzzle biology: align variable assignments 2019-11-02 22:09:00 +00:00
py-biopython math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
py-cutadapt py-cutadpt: add missing build dependency 2021-04-22 08:36:59 +00:00
py-dnaio py-dnaio: unbreak pkgsrc tree. revert removal of PYTHON_VERSIONS_INCOMPATIBLE. 2021-05-22 23:24:17 +00:00
py-mol math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
py-pydicom py-pydicom: Update to 1.3.0 2019-10-01 14:45:29 +00:00
R-popbio biology/R-popbio: import R-popbio-2.7 2020-08-10 18:18:46 +00:00
racon biology/racon: add racon 1.4.3 2021-05-26 18:53:39 +00:00
rasmol
samtools *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
sewer *: remove dead download location 2021-04-21 09:11:13 +00:00
stacks *: recursive bump for perl 5.34 2021-05-24 19:49:01 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
vcf-split biology/vcf-split: import vcf-split-0.1.1 2021-03-24 15:22:29 +00:00
vcf2hap biology/vcf2hap: import vcf2hap-0.1.2 2021-03-24 18:22:53 +00:00
vsearch various fixes for arm64 big endian support. 2021-04-25 07:51:24 +00:00
xylem all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
Makefile biology/filter-fastq: add filter-fastq version 0.0.0.20210527 2021-05-27 17:13:15 +00:00