3898f3ec0b
From pkgsrc-wip, packaged originally by Peter Ibsen Hansen. GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
684 lines
19 KiB
Text
684 lines
19 KiB
Text
@comment $NetBSD: PLIST,v 1.1.1.1 2010/03/15 14:08:49 asau Exp $
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bin/GMXRC
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bin/GMXRC.bash
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bin/GMXRC.csh
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bin/GMXRC.zsh
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bin/anadock
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bin/completion.bash
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bin/completion.csh
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bin/completion.zsh
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bin/demux.pl
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bin/do_dssp
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bin/editconf
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bin/eneconv
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bin/g_anaeig
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bin/g_analyze
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bin/g_angle
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bin/g_bond
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bin/g_bundle
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bin/g_chi
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bin/g_cluster
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bin/g_clustsize
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bin/g_confrms
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bin/g_covar
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bin/g_current
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bin/g_density
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bin/g_densmap
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bin/g_dielectric
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bin/g_dih
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bin/g_dipoles
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bin/g_disre
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bin/g_dist
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bin/g_dyndom
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bin/g_enemat
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bin/g_energy
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bin/g_filter
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bin/g_gyrate
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bin/g_h2order
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bin/g_hbond
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bin/g_helix
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bin/g_helixorient
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bin/g_kinetics
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bin/g_lie
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bin/g_mdmat
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bin/g_mindist
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bin/g_morph
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bin/g_msd
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bin/g_nmeig
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bin/g_nmens
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bin/g_nmtraj
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bin/g_order
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bin/g_polystat
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bin/g_potential
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bin/g_principal
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bin/g_rama
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bin/g_rdf
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bin/g_rms
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bin/g_rmsdist
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bin/g_rmsf
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bin/g_rotacf
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bin/g_saltbr
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bin/g_sas
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bin/g_sdf
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bin/g_sgangle
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bin/g_sham
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bin/g_sorient
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bin/g_spatial
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bin/g_spol
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bin/g_tcaf
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bin/g_traj
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bin/g_vanhove
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bin/g_velacc
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bin/g_wham
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bin/genbox
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bin/genconf
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bin/genion
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bin/genrestr
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bin/gmxcheck
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bin/gmxdump
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bin/grompp
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${PLIST.x11}bin/highway
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bin/luck
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bin/make_edi
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bin/make_ndx
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bin/mdrun
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bin/mk_angndx
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${PLIST.x11}bin/ngmx
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bin/pdb2gmx
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bin/protonate
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bin/sigeps
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bin/tpbconv
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bin/trjcat
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bin/trjconv
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bin/trjorder
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bin/wheel
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bin/x2top
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bin/xplor2gmx.pl
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bin/xpm2ps
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${PLIST.x11}bin/xrama
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include/gromacs/3dview.h
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include/gromacs/assert.h
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include/gromacs/atomprop.h
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include/gromacs/bondf.h
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include/gromacs/calcgrid.h
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include/gromacs/calch.h
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include/gromacs/calcmu.h
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include/gromacs/checkpoint.h
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include/gromacs/confio.h
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include/gromacs/constr.h
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include/gromacs/copyrite.h
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include/gromacs/coulomb.h
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include/gromacs/dihre.h
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include/gromacs/disre.h
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include/gromacs/do_fit.h
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include/gromacs/domdec.h
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include/gromacs/domdec_network.h
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include/gromacs/ebin.h
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include/gromacs/edsam.h
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include/gromacs/enxio.h
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include/gromacs/ffscanf.h
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include/gromacs/fftgrid.h
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include/gromacs/filenm.h
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include/gromacs/force.h
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include/gromacs/futil.h
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include/gromacs/gbutil.h
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include/gromacs/gmx_ana.h
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include/gromacs/gmx_arpack.h
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include/gromacs/gmx_blas.h
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include/gromacs/gmx_cyclecounter.h
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include/gromacs/gmx_fatal.h
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include/gromacs/gmx_fft.h
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include/gromacs/gmx_lapack.h
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include/gromacs/gmx_parallel_3dfft.h
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include/gromacs/gmx_random.h
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include/gromacs/gmx_system_xdr.h
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include/gromacs/gmx_thread.h
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include/gromacs/gmx_wallcycle.h
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include/gromacs/gmxcomplex.h
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include/gromacs/gmxfio.h
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include/gromacs/gpp_atomtype.h
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include/gromacs/gpp_nextnb.h
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include/gromacs/grompp.h
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include/gromacs/gstat.h
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include/gromacs/index.h
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include/gromacs/invblock.h
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include/gromacs/macros.h
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include/gromacs/magic.h
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include/gromacs/main.h
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include/gromacs/maths.h
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include/gromacs/matio.h
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include/gromacs/mdatoms.h
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include/gromacs/mdebin.h
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include/gromacs/mdrun.h
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include/gromacs/mpelogging.h
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include/gromacs/mshift.h
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include/gromacs/mtop_util.h
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include/gromacs/mtxio.h
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include/gromacs/mvdata.h
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include/gromacs/names.h
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include/gromacs/network.h
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include/gromacs/nonbonded.h
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include/gromacs/nrama.h
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include/gromacs/nrjac.h
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include/gromacs/nrnb.h
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include/gromacs/ns.h
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include/gromacs/nsgrid.h
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include/gromacs/orires.h
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include/gromacs/partdec.h
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include/gromacs/pbc.h
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include/gromacs/pdbio.h
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include/gromacs/pdebug.h
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include/gromacs/perf_est.h
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include/gromacs/physics.h
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include/gromacs/pme.h
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include/gromacs/pppm.h
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include/gromacs/princ.h
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include/gromacs/pull.h
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include/gromacs/qmmm.h
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include/gromacs/random.h
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include/gromacs/rbin.h
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include/gromacs/rdgroup.h
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include/gromacs/readcomp.h
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include/gromacs/readinp.h
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include/gromacs/reorder.h
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include/gromacs/rmpbc.h
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include/gromacs/shellfc.h
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include/gromacs/shift.h
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include/gromacs/smalloc.h
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include/gromacs/sortwater.h
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include/gromacs/sparsematrix.h
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include/gromacs/split.h
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include/gromacs/splitter.h
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include/gromacs/statusio.h
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include/gromacs/statutil.h
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include/gromacs/strdb.h
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include/gromacs/string2.h
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include/gromacs/struc2.h
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include/gromacs/symtab.h
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include/gromacs/sysstuff.h
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include/gromacs/tags.h
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include/gromacs/tgroup.h
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include/gromacs/topsort.h
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include/gromacs/tpxio.h
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include/gromacs/transfer.h
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include/gromacs/trnio.h
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include/gromacs/txtdump.h
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include/gromacs/typedefs.h
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include/gromacs/types/atoms.h
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include/gromacs/types/block.h
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include/gromacs/types/commrec.h
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include/gromacs/types/constr.h
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include/gromacs/types/energy.h
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include/gromacs/types/enums.h
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include/gromacs/types/fcdata.h
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include/gromacs/types/filenm.h
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include/gromacs/types/forcerec.h
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include/gromacs/types/graph.h
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include/gromacs/types/group.h
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include/gromacs/types/idef.h
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include/gromacs/types/ifunc.h
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include/gromacs/types/inputrec.h
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include/gromacs/types/ishift.h
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include/gromacs/types/matrix.h
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include/gromacs/types/mdatom.h
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include/gromacs/types/nblist.h
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include/gromacs/types/nbslist.h
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include/gromacs/types/nrnb.h
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include/gromacs/types/ns.h
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include/gromacs/types/nsgrid.h
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include/gromacs/types/pbc.h
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include/gromacs/types/qmmmrec.h
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include/gromacs/types/shellfc.h
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include/gromacs/types/simple.h
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include/gromacs/types/state.h
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include/gromacs/types/symtab.h
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include/gromacs/types/topology.h
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include/gromacs/types/trx.h
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include/gromacs/update.h
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include/gromacs/utils.h
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include/gromacs/vcm.h
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include/gromacs/vec.h
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include/gromacs/viewit.h
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include/gromacs/vsite.h
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include/gromacs/wgms.h
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include/gromacs/wman.h
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include/gromacs/writeps.h
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include/gromacs/xdrf.h
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include/gromacs/xtcio.h
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include/gromacs/xvgr.h
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lib/libgmx_d.la
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lib/libgmxana_d.la
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lib/libmd_d.la
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man/man1/anadock.1
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man/man1/do_dssp.1
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man/man1/editconf.1
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man/man1/eneconv.1
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man/man1/g_anaeig.1
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man/man1/g_analyze.1
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man/man1/g_angle.1
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man/man1/g_bond.1
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man/man1/g_bundle.1
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man/man1/g_chi.1
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man/man1/g_cluster.1
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man/man1/g_clustsize.1
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man/man1/g_confrms.1
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man/man1/g_covar.1
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man/man1/g_current.1
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man/man1/g_density.1
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man/man1/g_densmap.1
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man/man1/g_dielectric.1
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man/man1/g_dih.1
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man/man1/g_dipoles.1
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man/man1/g_disre.1
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man/man1/g_dist.1
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man/man1/g_dyndom.1
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man/man1/g_enemat.1
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man/man1/g_energy.1
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man/man1/g_filter.1
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man/man1/g_gyrate.1
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man/man1/g_h2order.1
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man/man1/g_hbond.1
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man/man1/g_helix.1
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man/man1/g_helixorient.1
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man/man1/g_kinetics.1
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man/man1/g_lie.1
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man/man1/g_mdmat.1
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man/man1/g_mindist.1
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man/man1/g_morph.1
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man/man1/g_msd.1
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man/man1/g_nmeig.1
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man/man1/g_nmens.1
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man/man1/g_nmtraj.1
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man/man1/g_order.1
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man/man1/g_polystat.1
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man/man1/g_potential.1
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man/man1/g_principal.1
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man/man1/g_rama.1
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man/man1/g_rdf.1
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man/man1/g_rms.1
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man/man1/g_rmsdist.1
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man/man1/g_rmsf.1
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man/man1/g_rotacf.1
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man/man1/g_saltbr.1
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man/man1/g_sas.1
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man/man1/g_sdf.1
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man/man1/g_sgangle.1
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man/man1/g_sham.1
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man/man1/g_sorient.1
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man/man1/g_spatial.1
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man/man1/g_spol.1
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man/man1/g_tcaf.1
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man/man1/g_traj.1
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man/man1/g_vanhove.1
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man/man1/g_velacc.1
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man/man1/g_wham.1
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man/man1/gen_table.1
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man/man1/genbox.1
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man/man1/genconf.1
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man/man1/genion.1
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man/man1/genrestr.1
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man/man1/gmxcheck.1
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man/man1/gmxdump.1
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man/man1/grompp.1
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man/man1/highway.1
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man/man1/make_edi.1
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man/man1/make_ndx.1
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man/man1/mdrun.1
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man/man1/mk_angndx.1
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man/man1/ngmx.1
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man/man1/pdb2gmx.1
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man/man1/protonate.1
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man/man1/sigeps.1
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man/man1/tpbconv.1
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man/man1/trjcat.1
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man/man1/trjconv.1
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man/man1/trjorder.1
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man/man1/wheel.1
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man/man1/x2top.1
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man/man1/xpm2ps.1
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man/man1/xrama.1
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share/gromacs/html/gmxfaq.html
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share/gromacs/html/images/1ctf-0.2.jpg
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share/gromacs/html/images/1ctf-0.5.jpg
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share/gromacs/html/images/1ctf-0.jpg
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share/gromacs/html/images/1ctf-1.jpg
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share/gromacs/html/images/1ctf-10.jpg
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share/gromacs/html/images/1ctf-4.jpg
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share/gromacs/html/images/articles.gif
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share/gromacs/html/images/bench.gif
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share/gromacs/html/images/charts_down.gif
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share/gromacs/html/images/charts_up.gif
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share/gromacs/html/images/faq.gif
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share/gromacs/html/images/features.gif
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share/gromacs/html/images/flow_down.gif
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share/gromacs/html/images/flow_downleft.gif
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share/gromacs/html/images/flow_hline.gif
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share/gromacs/html/images/flow_left.gif
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share/gromacs/html/images/flow_leftright.gif
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share/gromacs/html/images/flow_leftrightdown.gif
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share/gromacs/html/images/flow_leftrightup.gif
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share/gromacs/html/images/flow_leftup.gif
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share/gromacs/html/images/flow_right+left.gif
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share/gromacs/html/images/flow_right.gif
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share/gromacs/html/images/flow_rightleftdown.gif
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share/gromacs/html/images/flow_uprightleft.gif
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share/gromacs/html/images/flow_vline.gif
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share/gromacs/html/images/flow_vrule.gif
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share/gromacs/html/images/gmxlogo_small.jpg
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share/gromacs/html/images/links.gif
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share/gromacs/html/images/mail.gif
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share/gromacs/html/images/manual.gif
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share/gromacs/html/images/plotje.gif
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share/gromacs/html/images/software.gif
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share/gromacs/html/images/topologies.gif
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share/gromacs/html/images/xvgr.gif
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share/gromacs/html/online.html
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share/gromacs/html/online/cpt.html
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share/gromacs/html/online/dat.html
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share/gromacs/html/online/dlg.html
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share/gromacs/html/online/do_dssp.html
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share/gromacs/html/online/edi.html
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share/gromacs/html/online/editconf.html
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share/gromacs/html/online/edo.html
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share/gromacs/html/online/edr.html
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share/gromacs/html/online/ene.html
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share/gromacs/html/online/eneconv.html
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share/gromacs/html/online/eps.html
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share/gromacs/html/online/files.html
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share/gromacs/html/online/flow.html
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share/gromacs/html/online/g87.html
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share/gromacs/html/online/g96.html
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share/gromacs/html/online/g_anaeig.html
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share/gromacs/html/online/g_analyze.html
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share/gromacs/html/online/g_angle.html
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share/gromacs/html/online/g_bond.html
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share/gromacs/html/online/g_bundle.html
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share/gromacs/html/online/g_chi.html
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share/gromacs/html/online/g_cluster.html
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share/gromacs/html/online/g_confrms.html
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share/gromacs/html/online/g_covar.html
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share/gromacs/html/online/g_density.html
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share/gromacs/html/online/g_densmap.html
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share/gromacs/html/online/g_dielectric.html
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share/gromacs/html/online/g_dih.html
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share/gromacs/html/online/g_dipoles.html
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share/gromacs/html/online/g_disre.html
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share/gromacs/html/online/g_dist.html
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share/gromacs/html/online/g_dyndom.html
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share/gromacs/html/online/g_enemat.html
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share/gromacs/html/online/g_energy.html
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share/gromacs/html/online/g_gyrate.html
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share/gromacs/html/online/g_h2order.html
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share/gromacs/html/online/g_hbond.html
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share/gromacs/html/online/g_helix.html
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share/gromacs/html/online/g_lie.html
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share/gromacs/html/online/g_mdmat.html
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share/gromacs/html/online/g_mindist.html
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share/gromacs/html/online/g_morph.html
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share/gromacs/html/online/g_msd.html
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share/gromacs/html/online/g_nmeig.html
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share/gromacs/html/online/g_nmens.html
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share/gromacs/html/online/g_order.html
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share/gromacs/html/online/g_potential.html
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share/gromacs/html/online/g_rama.html
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share/gromacs/html/online/g_rdf.html
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share/gromacs/html/online/g_rms.html
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share/gromacs/html/online/g_rmsdist.html
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share/gromacs/html/online/g_rmsf.html
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share/gromacs/html/online/g_rotacf.html
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share/gromacs/html/online/g_saltbr.html
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share/gromacs/html/online/g_sas.html
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share/gromacs/html/online/g_sgangle.html
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share/gromacs/html/online/g_sham.html
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share/gromacs/html/online/g_sorient.html
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