pkgsrc/biology/mummer/patches/patch-aa
schwarz 14bf75a4c7 Updated biology/mummer to release 3.18. Changes include:
- MUMmer now resides at Sourceforge
- new tools such as delta-filter
- more extensive html documentation and examples
- bug fixes
2006-01-29 19:31:43 +00:00

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$NetBSD: patch-aa,v 1.3 2006/01/29 19:31:43 schwarz Exp $
--- Makefile.orig 2003-07-09 09:49:51.000000000 -0400
+++ Makefile 2003-09-27 18:15:34.000000000 -0400
@@ -22,7 +22,7 @@
# 'make uninstall' alias for 'make clean' (for compatibility)
#
#-------------------------------------------------------------------------------
-SHELL = /bin/sh
+SHELL = ${SH}
VERSION := 3.18
@@ -35,15 +35,12 @@
TIGR_SRC_DIR := $(TOP_DIR)/src/tigr
KURTZ_SRC_DIR := $(TOP_DIR)/src/kurtz
-CC := $(filter /%,$(shell /bin/sh -c 'type gcc'))
-CXX := $(filter /%,$(shell /bin/sh -c 'type g++'))
-SED := $(filter /%,$(shell /bin/sh -c 'type sed'))
+#CC := $(filter /%,$(shell /bin/sh -c 'type gcc'))
+#CXX := $(filter /%,$(shell /bin/sh -c 'type g++'))
+#SED := $(filter /%,$(shell /bin/sh -c 'type sed'))
CSH := $(filter /%,$(shell /bin/sh -c 'type csh'))
-PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
-AR := $(filter /%,$(shell /bin/sh -c 'type ar'))
-
-CPPFLAGS = -Wall -O3
-LDFLAGS =
+#PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
+#AR := $(filter /%,$(shell /bin/sh -c 'type ar'))
FLATS = ACKNOWLEDGEMENTS COPYRIGHT INSTALL LICENSE Makefile README ChangeLog