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pkgsrc/biology
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jperkin 5393242c73 *: Move SUBST_STAGE from post-patch to pre-configure 
Performing substitutions during post-patch breaks tools such as mkpatches,
making it very difficult to regenerate correct patches after making changes,
and often leading to substituted string replacements being committed.
2018-07-04 13:40:07 +00:00
..
arka Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
azara Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
bioperl bioperl: update to 1.007002. 2017-09-17 07:48:11 +00:00
bodr Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
bwa Re-add patch to bring timeval definition and select prototype into scope. 2017-12-27 23:44:01 +00:00
cdhit *: Move SUBST_STAGE from post-patch to pre-configure 2018-07-04 13:40:07 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool Recursive bump for new fribidi dependency in pango. 2018-04-16 14:33:44 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
fastDNAml Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit Recursive bump for new fribidi dependency in pango. 2018-04-16 14:33:44 +00:00
genesplicer Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils Recursive bump for new fribidi dependency in pango. 2018-04-16 14:33:44 +00:00
gp Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
gromacs Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. 2016-07-09 06:37:46 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
htslib *: Move SUBST_STAGE from post-patch to pre-configure 2018-07-04 13:40:07 +00:00
lucy Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
mopac Fix build. 2015-12-26 22:36:07 +00:00
mpqc Cleanup: replace curly braces with parentheses. 2018-01-01 01:10:13 +00:00
mummer Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. 2016-07-09 06:37:46 +00:00
ncbi-blast+ *: Move SUBST_STAGE from post-patch to pre-configure 2018-07-04 13:40:07 +00:00
nut Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
openbabel Recursive bump for new fribidi dependency in pango. 2018-04-16 14:33:44 +00:00
p5-Bio-ASN1-EntrezGene p5-Bio-ASN1-EntrezGene: update to 1.72. 2017-09-17 07:51:04 +00:00
pdbalign Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
phylip Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
plink Cleanup: replace curly braces with parentheses. 2018-01-01 01:10:13 +00:00
plinkseq plinkseq: use https 2018-02-11 15:50:59 +00:00
primer3 Sort PLIST files. 2018-01-01 22:29:15 +00:00
profit Moved documentation to share/doc/${PKGBASE}. Bumped PKGREVISION. 2016-07-24 21:11:52 +00:00
puzzle Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
py-mol extend PYTHON_VERSIONS_ for Python 3.7 2018-07-03 05:03:01 +00:00
rasmol Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
samtools biology/samtools: import samtools-1.8 2018-05-07 18:37:31 +00:00
sewer Sort PLIST files. 2018-01-01 22:29:15 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
xylem Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
Makefile Add samtools 2018-05-07 18:40:10 +00:00