066be082ec
v3.5 (2021-09-29) ----------------- * :issue:`555`: Add support for dumping statistics in JSON format using ``--json``. * :issue:`541`: Add a "Read fate breakdown" section heading to the report, and also add statistics for reads discarded because of ``--discard-untrimmed`` and ``--discard-trimmed``. With this, the numbers in that section should add up to 100%. * Add option ``-Q``, which allows to specify a quality-trimming threshold for R2 that is different from the one for R1. * :issue:`567`: Add ``noindels`` adapter-trimming parameter. You can now write ``-a "ADAPTER;noindels"`` to disallow indels for a single adapter only. * :issue:`570`: Fix ``--pair-adapters`` not finding some pairs when reads contain more than one adapter. * :issue:`524`: Fix a memory leak when using ``--info-file`` with multiple cores. * :issue:`559`: Fix adjacent base statistics not being shown for linked adapters. |
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