pkgsrc/biology
2022-11-23 16:18:32 +00:00
..
ad2vcf biology/ad2vcf: Update to 0.1.6 2022-06-11 19:48:32 +00:00
arka biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
azara Bump all dependent packages of wayland (belatedly) 2022-08-11 05:08:00 +00:00
bcftools *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
beagle biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
bedtools *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
biolibc biology/biolibc: Update to 0.2.3 2022-06-11 19:42:39 +00:00
biolibc-tools biology/biolibc-tools: Update to 0.1.3 2022-06-11 19:44:45 +00:00
bioperl *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
bodr massive revision bump after textproc/icu update 2022-11-23 16:18:32 +00:00
bowtie2 *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
bwa *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
canu *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
cdhit *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
chemical-mime-data biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
chemtool revbump for icu and libffi 2021-12-08 16:01:42 +00:00
clustalw biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
coalesce biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
coordgenlibs *: Recursive revbump from boost 1.78.0 2022-01-10 01:46:21 +00:00
fastDNAml biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
fastp biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
fastq-trim biology/fastq-trim: Lightening fast sequence read trimmer 2022-11-06 22:49:37 +00:00
fastqc *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
fastx-toolkit *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
filter-fastq *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
fluctuate biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gabedit revbump for icu and libffi 2021-12-08 16:01:42 +00:00
generand biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
genesplicer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gffread biology/gffread: GFF/GTF format conversions, filtering, etc 2022-11-06 23:01:17 +00:00
glimmer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gnome-chemistry-utils massive revision bump after textproc/icu update 2022-11-23 16:18:32 +00:00
gp biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gromacs massive revision bump after textproc/icu update 2022-11-23 16:18:32 +00:00
hisat2 *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
hmmer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
htslib *: bump PKGREVISION for libunistring shlib major bump 2022-10-26 10:31:00 +00:00
igv biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
kallisto biology/kallisto: Update to 0.48.0 2022-02-27 01:57:27 +00:00
lucy biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
maeparser *: Recursive revbump from boost 1.78.0 2022-01-10 01:46:21 +00:00
miniasm biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
minimap2 (biology/minimap2) Updated 2.18 to 2.24 2022-03-13 08:05:07 +00:00
molsketch massive revision bump after textproc/icu update 2022-11-23 16:18:32 +00:00
mopac biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
mpqc *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
mummer *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
ncbi-blast+ massive revision bump after textproc/icu update 2022-11-23 16:18:32 +00:00
nut biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
openbabel massive revision bump after textproc/icu update 2022-11-23 16:18:32 +00:00
p5-Bio-ASN1-EntrezGene *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
pdbalign biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
peak-classifier *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
phylip biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
plink biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
plinkseq revbump for devel/protobuf 2022-04-03 18:50:16 +00:00
primer3 biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
profit biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
puzzle biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
py-biopython py-biopython: update to 1.79. 2022-02-17 10:44:49 +00:00
py-cutadapt py-cutadapt: fix build with python 3.11 2022-11-16 23:02:14 +00:00
py-dnaio py-dnaio: update to 0.9.1. 2022-11-14 10:39:40 +00:00
py-pydicom py-pydicom: updated to 2.3.1 2022-11-15 10:15:54 +00:00
R-popbio biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
racon *: remove pkg-config from tools where no buildlink3.mk file is included 2022-07-25 11:12:18 +00:00
rasmol biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
samtools *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
sewer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
stacks *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
stride biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
trimmomatic biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
vcf-split biology/vcf-split: Update to 0.1.5 2022-06-11 19:46:43 +00:00
vcf2hap biology/vcf2hap: Update to 0.1.6 2022-06-11 19:50:59 +00:00
vsearch biology/vsearch: Update to 2.18.0 2021-12-17 19:20:44 +00:00
xylem biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
Makefile biology/Makefile: Add gffread 2022-11-06 23:01:44 +00:00