2d64622db7
v0.9.1 (2022-08-01) ------------------- * :pr:`85`: macOS wheels are now also built as part of the release procedure. * :pr:`81`: API documentation improvements and minor code refactors for readability. v0.9.0 (2022-05-17) ------------------- * :pr:`79`: Added a `records_are_mates` function to be used for checking whether three or more records are mates of each other (by checking the ID). * :pr:`74`, :pr:`68`: Made FASTQ parsing faster by implementing the check for ASCII using SSE vector instructions. * :pr:`72`: Added a `tutorial <https://dnaio.readthedocs.io/en/latest/tutorial.html>`_. v0.8.0 (2022-03-26) ------------------- * Preliminary documentation is available at <https://dnaio.readthedocs.io/>. * :pr:`53`: Renamed ``Sequence`` to `SequenceRecord`. The previous name is still available as an alias so that existing code will continue to work. * When reading a FASTQ file, there is now a check that ensures that all characters are ASCII. * Function ``record_names_match`` is deprecated, use `SequenceRecord.is_mate` instead. * Dropped Python 3.6 support as it is end-of-life. v0.7.1 (2022-01-26) ------------------- * :pr:`34`: Fix parsing of FASTA files that just contain a comment and no reads v0.7.0 (2022-01-17) ------------------- * @rhpvorderman contributed many performance improvements in :pr:`15`, :pr:`17`, :pr:`18`, :pr:`20`, :pr:`21`, :pr:`22`, :pr:`23`. Reading and writing FASTQ files and reading of paired-end FASTQ files was sped up significantly. For example, reading uncompressed FASTQ is 50% faster (!) than before. * :pr:`28`: Windows support added v0.6.0 (2021-09-28) ------------------- * :pr:`12`: Improve FASTQ writing speed twofold (thanks to @rhpvorderman) v0.5.2 (2021-09-07) ------------------- * :issue:`7`: Ignore a trailing "3" in the read id
20 lines
630 B
Makefile
20 lines
630 B
Makefile
# $NetBSD: Makefile,v 1.7 2022/11/14 10:39:40 wiz Exp $
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DISTNAME= dnaio-0.9.1
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PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
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CATEGORIES= biology python
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MASTER_SITES= ${MASTER_SITE_PYPI:=d/dnaio/}
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= https://github.com/marcelm/dnaio
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COMMENT= Read and write FASTQ and FASTA files
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LICENSE= mit
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TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools_scm-[0-9]*:../../devel/py-setuptools_scm
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TOOL_DEPENDS+= ${PYPKGPREFIX}-cython>=0.29.20:../../devel/py-cython
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DEPENDS+= ${PYPKGPREFIX}-xopen>=0.8.2:../../devel/py-xopen
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PYTHON_VERSIONS_INCOMPATIBLE= 27
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.include "../../lang/python/egg.mk"
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.include "../../mk/bsd.pkg.mk"
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