68ef3b47da
Circos is a Perl application for the generation of publication-quality, circularly composited renditions of genomic data and related annotations. Circos is particularly suited for visualizing alignments, conservation and intra and inter-chromosomal relationships. Approved by: groo
69 lines
2.2 KiB
Makefile
69 lines
2.2 KiB
Makefile
# $NetBSD: Makefile,v 1.1.1.1 2009/04/21 17:51:05 schmonz Exp $
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#
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DISTNAME= circos-0.49
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CATEGORIES= graphics
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MASTER_SITES= http://mkweb.bcgsc.ca/circos/distribution/
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EXTRACT_SUFX= .tgz
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MAINTAINER= schmonz@NetBSD.org
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HOMEPAGE= http://mkweb.bcgsc.ca/circos/
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COMMENT= Concise, explanatory, unique and print-ready data visualization
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#LICENSE=
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USE_LANGUAGES= # none
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USE_TOOLS+= pax perl
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NO_BUILD= yes
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DEPENDS+= p5-Clone-[0-9]*:../../devel/p5-Clone
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DEPENDS+= p5-Config-General-[0-9]*:../../devel/p5-Config-General
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DEPENDS+= p5-GD-[0-9]*:../../graphics/p5-GD
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DEPENDS+= p5-Math-Bezier-[0-9]*:../../math/p5-Math-Bezier
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DEPENDS+= p5-Math-Round-[0-9]*:../../math/p5-Math-Round # XXX commit
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DEPENDS+= p5-Math-VecStat-[0-9]*:../../math/p5-Math-VecStat # XXX
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DEPENDS+= p5-Params-Validate-[0-9]*:../../devel/p5-Params-Validate
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DEPENDS+= p5-Set-IntSpan>=1.11*:../../devel/p5-Set-IntSpan
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PKG_SYSCONFSUBDIR= ${PKGBASE}
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INSTALLATION_DIRS+= bin share/${PKGBASE} ${FONTDIR} ${EGDIR}
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INSTALLATION_DIRS+= share/doc/${PKGBASE}
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EGDIR= share/examples/${PKGBASE}
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CONF_FILES+= ${EGDIR}/colors.conf ${PKG_SYSCONFDIR}/colors.conf
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CONF_FILES+= ${EGDIR}/fonts.conf ${PKG_SYSCONFDIR}/fonts.conf
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SUBST_CLASSES+= paths
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SUBST_STAGE.paths= do-configure
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SUBST_FILES.paths= */*/*/circos*.conf bin/circos
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SUBST_SED.paths+= -e 's|<<include etc/\(.*\)>>|<<include ${PKG_SYSCONFDIR}/\1>>|g'
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SUBST_SED.paths+= -e 's|@PREFIX@|${PREFIX}|g'
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REPLACE_PERL+= data/3/make_random_highlights data/6/hist.random.make
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REPLACE_PERL+= svg/textrotation.svg
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post-extract:
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cd ${WRKSRC} && rm -f bin/${PKGBASE} \
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&& mv bin/${PKGNAME_NOREV} bin/${PKGBASE}
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do-configure:
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cd ${WRKSRC} && ( ${ECHO} ${PERL5:Q} ; ${ECHO} ) | ./install
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pre-configure:
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cd ${WRKSRC} && rm -f bin/*.orig
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do-install:
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cd ${WRKSRC} && \
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for f in CHANGES README TODO; do \
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${INSTALL_DATA} $${f} ${PREFIX}/share/doc/${PKGBASE}; \
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done; \
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for f in bin/*; do \
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${INSTALL_SCRIPT} $${f} ${PREFIX}/bin; \
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done; \
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for f in etc/*; do \
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${INSTALL_DATA} $${f} ${PREFIX}/${EGDIR}; \
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done; \
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pax -rw -pp data fonts images svg tutorials ${PREFIX}/share/circos
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# XXX install recursively data,images,svg,tutorials to share/circos
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# XXX then see if stuff works, find more paths to fix
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.include "../../mk/bsd.pkg.mk"
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