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pkgsrc/biology
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asau 928bfcc9fd Update to Gromacs 4.5.4: 
* Fixed pdb2gmx picking up force field from local instead of
library directory
* Made pdb2gmx vsite generation work again for certain His namings.
* Fixed incorrect virial and pressure averages with certain
nst... values (instantaneous values correct)
* Fixed incorrect cosine viscosity output
* New -multidir alternative for mdrun -multi option
* Several minor fixes in analysis tools
* Several updates to the program documentation
2011-03-23 05:36:29 +00:00
..
arka Remove USE_DIRS from pkgsrc. 2009-07-22 09:01:16 +00:00
azara Mark packages as MAKE_JOBS_SAFE=no that failed in a bulk build with 2009-06-30 00:07:09 +00:00
bioperl Bump the PKGREVISION for all packages which depend directly on perl, 2010-08-21 16:32:42 +00:00
chemtool Update to Chemtool 1.6.12. 2009-09-05 13:43:26 +00:00
clustalw Remove @dirrm entries from PLISTs 2009-06-14 17:28:16 +00:00
coalesce Remove @dirrm entries from PLISTs 2009-06-14 17:28:16 +00:00
fastDNAml Remove @dirrm entries from PLISTs 2009-06-14 17:28:16 +00:00
fluctuate Remove @dirrm entries from PLISTs 2009-06-14 17:28:16 +00:00
genesplicer Remove @dirrm entries from PLISTs 2009-06-14 17:28:16 +00:00
glimmer Remove @dirrm entries from PLISTs 2009-06-14 17:28:16 +00:00
gp honour PKGMANDIR 2009-09-23 13:34:33 +00:00
gromacs Update to Gromacs 4.5.4: 2011-03-23 05:36:29 +00:00
hmmer Fix patch-aa sum. 2009-07-16 14:53:19 +00:00
lucy Update lucy to 1.20. 2010-09-19 07:13:37 +00:00
mopac "fortran" -> "fortran77" except where it is clear that it isn't F77. 2010-07-30 10:36:22 +00:00
mummer Remove @dirrm entries from PLISTs 2009-06-14 17:28:16 +00:00
nut Update nut to 15.8. 2010-09-19 07:52:19 +00:00
pdbalign Mechanical changes to add full DESTDIR support to packages that install 2008-03-03 00:51:43 +00:00
phylip Update phylip to 3.69. 2010-07-10 11:26:32 +00:00
profit Remove @dirrm entries from PLISTs 2009-06-14 17:28:16 +00:00
puzzle Update puzzle to 5.2. 2010-09-19 08:38:14 +00:00
py-mol png shlib name changed for png>=1.5.0, so bump PKGREVISIONs. 2011-01-13 13:36:05 +00:00
rasmol Remove RCS directory, or may failed to patch due to locked under RCS. 2010-12-30 08:33:47 +00:00
sewer Change default for zip extraction to leave files as they are. 2009-08-25 11:56:34 +00:00
stride Mechanical changes to add full DESTDIR support to packages that install 2008-03-03 00:51:43 +00:00
xylem Not MAKE_JOBS_SAFE. 2009-07-16 15:17:22 +00:00
Makefile Sort list. 2010-03-18 08:02:32 +00:00