Automatic conversion of the NetBSD pkgsrc CVS module, use with care
6cf03299f0
A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom- generated C++. 'NIMBLE' includes default methods for MCMC, particle filtering, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>. |
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pkgsrc
pkgsrc is a framework for building software for a variety of UNIX-like systems.
It produces binary packages, which can be managed with tools such as pkgin.
Bootstrapping
To use pkgsrc on operating systems other than NetBSD, you first need to bootstrap:
cd pkgsrc/bootstrap
./bootstrap
Note that this is only for the most simple case, using pkgsrc's defaults.
Please consult bootstrap/README and bootstrap/README.OS for detailed
information about bootstrapping.
Building packages
cd pkgsrc/category/package-name
$PREFIX/bin/bmake install
Where $PREFIX is where you've chosen to install packages
(typically /usr/pkg)
On NetBSD, bmake is simply the built-in make tool.
To build packages in bulk, tools such as pkgtools/pbulk and
pkgtools/pkg_comp can be used.
Troubleshooting
- Join the community IRC channel #pkgsrc @ freenode.
- Subscribe to the pkgsrc-users mailing list
- Send bugs and patches via web form (use the
pkgcategory).
Latest sources
To fetch the main CVS repository:
cvs -d anoncvs@anoncvs.NetBSD.org:/cvsroot checkout -P pkgsrc
To work in the Git mirror, which is updated every few hours from CVS:
git clone https://github.com/NetBSD/pkgsrc.git
Additional links
- The pkgsrc guide
- pkgsrc in the NetBSD Wiki
- Searchable index of packages in pkgsrc
- pkgsrc-wip - a project to get more people actively involved with creating packages for pkgsrc
- pkgsrc on Twitter
- pkgsrcCon