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pkgsrc/biology
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bacon e8920912ba biology/chemtool: Fix build on CentOS and NetBSD 
Upstream build does not use LDFLAGS canonically.
Makefile.in will require restructuring to eliminate workaround.
This patch fixes build on CentOS and build with RELRO on NetBSD.

Also add LICENSE and fig2dev runtime dependency.
2019-04-06 00:41:46 +00:00
..
arka Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
azara Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
bcftools biology/bcftools: Add zlib dependency for Linux 2019-03-27 15:58:38 +00:00
bioperl Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
bodr Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
bwa Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
canu biology/canu: import canu-1.8 2019-01-07 02:33:17 +00:00
cdhit Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool biology/chemtool: Fix build on CentOS and NetBSD 2019-04-06 00:41:46 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
fastDNAml Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
genesplicer Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
gp Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
gromacs Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
hisat2 biology/hisat2: import hisat2-2.1.0.23 2019-01-15 01:26:29 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
htslib revbump for boost 1.69.0 2018-12-13 19:51:31 +00:00
kallisto biology/kallisto: import kallisto-0.45.0 2018-12-21 19:00:56 +00:00
lucy Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
mopac Fix build. 2015-12-26 22:36:07 +00:00
mpqc Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
mummer Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
ncbi-blast+ Recursive revbump from textproc/icu 2019-04-03 00:32:25 +00:00
nut Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
openbabel Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
p5-Bio-ASN1-EntrezGene Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
pdbalign Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
phylip Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
plink Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
plinkseq Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
primer3 Mark packages that require C++03 (or the GNU variants) if they fail with 2018-07-18 00:06:10 +00:00
profit Moved documentation to share/doc/${PKGBASE}. Bumped PKGREVISION. 2016-07-24 21:11:52 +00:00
puzzle Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
py-mol extend PYTHON_VERSIONS_ for Python 3.7 2018-07-03 05:03:01 +00:00
py-pydicom py-pydicom: Update to 1.2.1. 2018-12-05 10:09:09 +00:00
rasmol Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
samtools biology/samtools: Add zlib dependency for Linux 2019-03-27 20:47:36 +00:00
sewer Sort PLIST files. 2018-01-01 22:29:15 +00:00
stacks biology/stacks: import stacks-2.2 2018-12-22 21:52:06 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
xylem xylem: build fix 2018-09-29 12:49:55 +00:00
Makefile Add hisat2 2019-01-15 01:27:42 +00:00