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Introduction Beagle is a software package for phasing genotypes and for imputing ungenotyped markers. Beagle version 5.2 provides significantly faster genotype phasing than version 5.1 Citation If you use Beagle in a published analysis, please report the program version and cite the appropriate article. The Beagle 5.2 genotype imputation method is described in: B L Browning, Y Zhou, and S R Browning (2018). A one-penny imputed genome from next generation reference panels. Am J Hum Genet 103(3):338-348. doi:10.1016/j.ajhg.2018.07.015 The most recent reference for Beagle's phasing method is: S R Browning and B L Browning (2007) Rapid and accurate haplotype phasing and missing data inference for whole genome association studies by use of localized haplotype clustering. Am J Hum Genet 81:1084-1097. doi:10.1086/521987 This reference will be updated when the Beagle version 5 phasing method is published.
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613 B
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15 lines
613 B
Text
Beagle is a software package for phasing genotypes and for imputing
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ungenotyped markers.
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The Beagle 5.2 genotype imputation method is described in:
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B L Browning, Y Zhou, and S R Browning (2018). A one-penny imputed
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genome from next generation reference panels. Am J Hum Genet
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103(3):338-348. doi:10.1016/j.ajhg.2018.07.015
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The most recent reference for Beagle's phasing method is:
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S R Browning and B L Browning (2007) Rapid and accurate haplotype
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phasing and missing data inference for whole genome association
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studies by use of localized haplotype clustering. Am J Hum Genet
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81:1084-1097. doi:10.1086/521987
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