pkgsrc/biology
wiz 7af09c75cf bioperl: update to 1.007002.
Add p5-Text-Diff as test dependency.

1.7.2 - "Entebbe"

    [Bugs]

    * #247 - Omit unnecessary parent_id attribute added by GFF3Loader [nathanweeks]
    * #245 - Code coverage fixes [zmughal,cjfields]
    * #237 - Fix warning in Bio::DB::IndexedBase [willmclaren,bosborne]
    * #238 - Use a Travis cron job for network tests [zmughal,cjfields]
    * #218 - Bio::DB::Flat::BinarySearch should use _fh() instead of fh() as fh() does not take arguments in [thibauthourlier,bosborne]
    * #227 - Bio::SeqIO Ignores first line of sequence [VAR121,bosborne]
    * #223 - Use Travis Perl helper script and enable coverage [zmughal,cjfields]
    * #222 - Fix test RemoteDB/Taxonomy.t: requires networking [zmughal,cjfields]
    * #216 - Apply carsonhh's patch (Inline::C fixes) [carsonh,bosborne]
    * #213 - Support FTS5 in Bio::DB::SeqFeature::Store::DBI::SQLite [nathanweeks,bosborne]
    * #210 - Sorting qualifiers while write embl files [hdevillers,cjfields]
    * #209 - Fixed bug in _toDsspKey() [jvolkening,hlapp]

    [Code changes]

    * PAML-related code from bioperl and bioperl-run are now in a separate distribution on CPAN [carandraug]
2017-09-17 07:48:11 +00:00
..
arka Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
azara Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
bioperl bioperl: update to 1.007002. 2017-09-17 07:48:11 +00:00
bodr Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
bwa Add missing include. 2017-02-14 21:34:34 +00:00
cdhit Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. 2016-07-09 06:37:46 +00:00
chemical-mime-data Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
chemtool Recursive revbump from fonts/harfbuzz 2017-02-12 06:24:36 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
fastDNAml Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit Recursive revbump from fonts/harfbuzz 2017-02-12 06:24:36 +00:00
genesplicer Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
glimmer Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
gnome-chemistry-utils Recursive revbump from fonts/harfbuzz 2017-02-12 06:24:36 +00:00
gp Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
gromacs Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. 2016-07-09 06:37:46 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
lucy Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
mopac Fix build. 2015-12-26 22:36:07 +00:00
mpqc Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. 2016-07-09 06:37:46 +00:00
mummer Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. 2016-07-09 06:37:46 +00:00
nut Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
openbabel Recursive revbump from fonts/harfbuzz 2017-02-12 06:24:36 +00:00
p5-Bio-ASN1-EntrezGene Recursive revbump from lang/perl5 5.26.0 2017-06-05 14:22:16 +00:00
pdbalign Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
phylip Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
plink Comment out dead MASTER_SITES/HOMEPAGEs. 2017-09-03 08:36:49 +00:00
plinkseq Fixed pkglint warnings. 2016-12-17 12:55:29 +00:00
primer3 Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
profit Moved documentation to share/doc/${PKGBASE}. Bumped PKGREVISION. 2016-07-24 21:11:52 +00:00
puzzle Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
py-mol Add python-3.6 to incompatible versions. 2017-01-01 14:43:22 +00:00
rasmol Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
sewer Moved documentation to share/doc/$(PKGBASE). Bumped PKGREVISION. 2016-07-24 21:21:13 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
xylem Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
Makefile Deleting p5-BioPerl. Duplicate with bioperl. Sorry. 2017-05-10 15:09:47 +00:00