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pkgsrc/biology
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pin ebdbdf11f7 biology/molsketch: update to 0.7.2 
-This is just a small release to fix some issues with the (possibly) renamed
*.so/*.dll files after removing Qt5 support. In case you were using Molsketch
prior to version 0.7.1, it will ask you to update the corresponding settings at
start up.
For Windows users, there will be an online installer, as in version 0.7.1, but
this will now reside in a separate folder and not be updated as frequently as
Molsketch itself. Updates will instead be made available in the online
repository at github from which the installer will fetch them. Just start the
installer and select the update option
2021-04-04 19:10:20 +00:00
..
ad2vcf biology/ad2vcf: import ad2vcf-0.1.2 2021-03-24 18:19:21 +00:00
arka
azara
bcftools biology/htslib: Update to 1.12 2021-03-20 18:17:07 +00:00
bedtools biology/bedtools: Update to 2.30.0 2021-02-08 01:49:25 +00:00
biolibc biology/biolibc: import biolibc-0.1.1 2021-03-24 15:20:08 +00:00
bioperl bioperl: update to 1.7.7. 2020-09-06 20:07:47 +00:00
bodr *: Recursive revbump from textproc/icu-68.1 2020-11-05 09:07:25 +00:00
bowtie2 biology/bowtie2: import bowtie2-2.4.2 2021-01-21 17:30:12 +00:00
bwa *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
canu *: Recursive revbump from boost-1.75.0 2021-01-01 08:24:33 +00:00
cdhit *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
chemical-mime-data
chemtool *: revbump after fontconfig bl3 changes (libuuid removal) 2020-08-17 20:17:15 +00:00
clustalw
coalesce
coordgenlibs *: Recursive revbump from boost-1.75.0 2021-01-01 08:24:33 +00:00
fastDNAml
fastp
fastqc biology/fastqc: import fastqc-0.11.9 2021-01-20 15:57:17 +00:00
fluctuate
gabedit *: revbump after fontconfig bl3 changes (libuuid removal) 2020-08-17 20:17:15 +00:00
generand biology/generand: import generand-0.1.2 2021-03-21 14:23:46 +00:00
genesplicer
glimmer
gnome-chemistry-utils *: Recursive revbump from textproc/icu-68.1 2020-11-05 09:07:25 +00:00
gp
gromacs *: Recursive revbump from textproc/icu-68.1 2020-11-05 09:07:25 +00:00
hisat2 Revbump packages with a runtime Python dep but no version prefix. 2020-12-04 20:44:57 +00:00
hmmer
htslib biology/htslib: Update to 1.12 2021-03-20 18:17:07 +00:00
igv biology/igv: import igv-2.9.2 2021-02-24 13:54:25 +00:00
kallisto kallisto: remove patches that were removed from distinfo during update 2020-07-30 07:59:19 +00:00
lucy
maeparser *: Recursive revbump from boost-1.75.0 2021-01-01 08:24:33 +00:00
molsketch biology/molsketch: update to 0.7.2 2021-04-04 19:10:20 +00:00
mopac
mpqc math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
mummer *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
ncbi-blast+ Revbump packages with a runtime Python dep but no version prefix. 2020-12-04 20:44:57 +00:00
nut
openbabel openbabel: make buildlink3.mk match Makefile and require eigen3 2021-03-17 18:58:57 +00:00
p5-Bio-ASN1-EntrezGene p5-Bio-ASN1-EntrezGene: update to 1.73. 2020-09-06 19:43:03 +00:00
pdbalign
phylip
plink math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
plinkseq
primer3
profit
puzzle
py-biopython math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
py-cutadapt py-cutadapt: updated to 3.4 2021-03-31 09:23:56 +00:00
py-dnaio (biology/py-dnaio) +BUILD_DEPENDS+= py-setuptools_scm (other than 27 are fixed) 2021-03-04 13:06:34 +00:00
py-mol math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
py-pydicom
R-popbio biology/R-popbio: import R-popbio-2.7 2020-08-10 18:18:46 +00:00
rasmol
samtools biology/htslib: Update to 1.12 2021-03-20 18:17:07 +00:00
sewer
stacks Revbump packages with a runtime Python dep but no version prefix. 2020-12-04 20:44:57 +00:00
stride
trimmomatic
vcf-split biology/vcf-split: import vcf-split-0.1.1 2021-03-24 15:22:29 +00:00
vcf2hap biology/vcf2hap: import vcf2hap-0.1.2 2021-03-24 18:22:53 +00:00
vsearch
xylem
Makefile biology/Makefile: Add vcf2hap 2021-03-24 18:23:33 +00:00