94e269c682
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule
sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
Detect overlaps in high-noise sequences using MHAP
Generate corrected sequence consensus
Trim corrected sequences
Assemble trimmed corrected sequences
80 lines
2 KiB
Text
80 lines
2 KiB
Text
@comment $NetBSD: PLIST,v 1.1 2019/01/07 02:33:17 bacon Exp $
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bin/alignGFA
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bin/bogart
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bin/bogus
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bin/canu
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bin/correctOverlaps
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bin/dumpBlob
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bin/edalign
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bin/errorEstimate
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bin/falconsense
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bin/fastqAnalyze
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bin/fastqSample
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bin/fastqSimulate
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bin/fastqSimulate-sort
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bin/filterCorrectionLayouts
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bin/filterCorrectionOverlaps
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bin/findErrors
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bin/findErrors-Dump
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bin/generateCorrectionLayouts
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bin/loadCorrectedReads
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bin/loadErates
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bin/loadTrimmedReads
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bin/meryl
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bin/mhapConvert
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bin/mmapConvert
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bin/ovStoreBucketizer
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bin/ovStoreBuild
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bin/ovStoreConfig
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bin/ovStoreDump
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bin/ovStoreIndexer
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bin/ovStoreSorter
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bin/ovStoreStats
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bin/overlapConvert
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bin/overlapImport
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bin/overlapInCore
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bin/overlapInCorePartition
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bin/overlapPair
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bin/prefixEditDistance-matchLimitGenerate
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bin/readConsensus
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bin/sequence
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bin/splitHaplotype
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bin/splitReads
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bin/sqStoreCreate
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bin/sqStoreCreatePartition
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bin/sqStoreDumpFASTQ
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bin/sqStoreDumpMetaData
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bin/tgStoreCompress
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bin/tgStoreCoverageStat
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bin/tgStoreDump
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bin/tgStoreFilter
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bin/tgStoreLoad
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bin/tgTigDisplay
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bin/trimReads
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bin/utgcns
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bin/wtdbgConvert
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lib/perl5/site_perl/canu/Configure.pm
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lib/perl5/site_perl/canu/Consensus.pm
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lib/perl5/site_perl/canu/CorrectReads.pm
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lib/perl5/site_perl/canu/Defaults.pm
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lib/perl5/site_perl/canu/Execution.pm
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lib/perl5/site_perl/canu/Grid.pm
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lib/perl5/site_perl/canu/Grid_Cloud.pm
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lib/perl5/site_perl/canu/Grid_DNANexus.pm
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lib/perl5/site_perl/canu/Grid_LSF.pm
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lib/perl5/site_perl/canu/Grid_PBSTorque.pm
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lib/perl5/site_perl/canu/Grid_SGE.pm
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lib/perl5/site_perl/canu/Grid_Slurm.pm
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lib/perl5/site_perl/canu/HaplotypeReads.pm
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lib/perl5/site_perl/canu/Meryl.pm
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lib/perl5/site_perl/canu/Output.pm
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lib/perl5/site_perl/canu/OverlapBasedTrimming.pm
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lib/perl5/site_perl/canu/OverlapErrorAdjustment.pm
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lib/perl5/site_perl/canu/OverlapInCore.pm
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lib/perl5/site_perl/canu/OverlapMMap.pm
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lib/perl5/site_perl/canu/OverlapMhap.pm
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lib/perl5/site_perl/canu/OverlapStore.pm
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lib/perl5/site_perl/canu/Report.pm
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lib/perl5/site_perl/canu/SequenceStore.pm
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lib/perl5/site_perl/canu/Unitig.pm
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share/java/classes/mhap-2.1.3.jar
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