| .. |
|
ad2vcf
|
biology/ad2vcf: Update to 0.1.3.31
|
2021-08-28 18:39:10 +00:00 |
|
arka
|
biology/arka: document 2 instances of char as array index
|
2020-05-03 14:58:18 +00:00 |
|
azara
|
*: recursive bump for libffi
|
2020-03-08 16:47:24 +00:00 |
|
bcftools
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
beagle
|
biology/beagle: added beagle 5.2
|
2021-05-26 19:13:39 +00:00 |
|
bedtools
|
biology/bedtools: Update to 2.30.0
|
2021-02-08 01:49:25 +00:00 |
|
biolibc
|
biology/biolibc: Update to 0.2.0.11
|
2021-09-18 00:42:39 +00:00 |
|
biolibc-tools
|
biology/biolibc-tools: import biolibc-tools-0.1.0.36
|
2021-08-31 15:55:16 +00:00 |
|
bioperl
|
Revbump for MySQL default change
|
2021-06-23 20:33:06 +00:00 |
|
bodr
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
bowtie2
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
bwa
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
canu
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
cdhit
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
chemical-mime-data
|
chemical-mime-data: comment out dead sites
|
2017-12-24 09:42:12 +00:00 |
|
chemtool
|
*: revbump after fontconfig bl3 changes (libuuid removal)
|
2020-08-17 20:17:15 +00:00 |
|
clustalw
|
|
|
|
coalesce
|
*: remove dead download locations
|
2021-04-21 09:12:23 +00:00 |
|
coordgenlibs
|
revbump for boost-libs
|
2021-04-21 13:24:06 +00:00 |
|
fastDNAml
|
*: remove dead download location
|
2021-04-21 09:11:13 +00:00 |
|
fastp
|
biology/fastp: document possible array[char] bug
|
2020-05-25 05:18:35 +00:00 |
|
fastqc
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
filter-fastq
|
biology/filter-fastq: add filter-fastq version 0.0.0.20210527
|
2021-05-27 17:11:42 +00:00 |
|
fluctuate
|
|
|
|
gabedit
|
*: revbump after fontconfig bl3 changes (libuuid removal)
|
2020-08-17 20:17:15 +00:00 |
|
generand
|
biology/generand: import generand-0.1.2
|
2021-03-21 14:23:46 +00:00 |
|
genesplicer
|
|
|
|
glimmer
|
Sort PLIST files.
|
2018-01-01 22:29:15 +00:00 |
|
gnome-chemistry-utils
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
gp
|
all: migrate homepages from http to https
|
2020-01-26 17:30:40 +00:00 |
|
gromacs
|
*: recursive PKGREVISION bump for sneaky gsl shared library version number change
|
2021-06-01 09:12:22 +00:00 |
|
hisat2
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
hmmer
|
|
|
|
htslib
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
igv
|
biology/igv: import igv-2.9.2
|
2021-02-24 13:54:25 +00:00 |
|
kallisto
|
kallisto: remove patches that were removed from distinfo during update
|
2020-07-30 07:59:19 +00:00 |
|
lucy
|
mark packages that fail with -Werror=char-subscripts
|
2020-05-20 06:09:03 +00:00 |
|
maeparser
|
revbump for boost-libs
|
2021-04-21 13:24:06 +00:00 |
|
miniasm
|
biology/miniasm: add miniasm 0.3
|
2021-05-26 18:44:44 +00:00 |
|
minimap2
|
biology/minimap2: install minimap2 program instead of python binding
|
2021-05-29 17:35:18 +00:00 |
|
molsketch
|
revbump for textproc/icu
|
2021-04-21 11:40:12 +00:00 |
|
mopac
|
|
|
|
mpqc
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
mummer
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
ncbi-blast+
|
biology/ncbi-blast+: Update to 2.11.0
|
2021-06-11 13:47:39 +00:00 |
|
nut
|
all: migrate some SourceForge homepage URLs back from https to http
|
2020-01-26 05:26:08 +00:00 |
|
openbabel
|
revbump for boost-libs
|
2021-04-21 13:24:06 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
pdbalign
|
|
|
|
peak-classifier
|
biology/peak-classifier: Update to 0.1.1.21
|
2021-09-03 01:57:56 +00:00 |
|
phylip
|
*: remove dead download locations
|
2021-04-21 09:12:23 +00:00 |
|
plink
|
math/blas, math/lapack: Install interchangeable BLAS system
|
2020-10-12 21:51:57 +00:00 |
|
plinkseq
|
Multiple packages: Replace obsolete maintainer email
|
2019-01-13 22:06:42 +00:00 |
|
primer3
|
*: Convert broken sourceforge HOMEPAGEs back to http
|
2020-03-20 11:57:22 +00:00 |
|
profit
|
|
|
|
puzzle
|
biology: align variable assignments
|
2019-11-02 22:09:00 +00:00 |
|
py-biopython
|
py-numpy: "Python version >= 3.7 required."
|
2021-06-29 08:41:59 +00:00 |
|
py-cutadapt
|
py-cutadpt: add missing build dependency
|
2021-04-22 08:36:59 +00:00 |
|
py-dnaio
|
py-dnaio: unbreak pkgsrc tree. revert removal of PYTHON_VERSIONS_INCOMPATIBLE.
|
2021-05-22 23:24:17 +00:00 |
|
py-mol
|
math/blas, math/lapack: Install interchangeable BLAS system
|
2020-10-12 21:51:57 +00:00 |
|
py-pydicom
|
py-pydicom: PLIST fix
|
2021-09-01 18:18:19 +00:00 |
|
R-popbio
|
biology/R-popbio: import R-popbio-2.7
|
2020-08-10 18:18:46 +00:00 |
|
racon
|
biology/racon: add racon 1.4.3
|
2021-05-26 18:53:39 +00:00 |
|
rasmol
|
|
|
|
samtools
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
sewer
|
*: remove dead download location
|
2021-04-21 09:11:13 +00:00 |
|
stacks
|
*: recursive bump for perl 5.34
|
2021-05-24 19:49:01 +00:00 |
|
stride
|
|
|
|
trimmomatic
|
biology/trimmomatic: import Trimmomatic-0.38
|
2018-07-25 15:14:32 +00:00 |
|
vcf-split
|
biology/vcf-split: Update to 0.1.2.14
|
2021-08-28 18:39:37 +00:00 |
|
vcf2hap
|
biology/vcf2hap: Update to 0.1.3.12
|
2021-08-28 18:40:06 +00:00 |
|
vsearch
|
various fixes for arm64 big endian support.
|
2021-04-25 07:51:24 +00:00 |
|
xylem
|
all: migrate homepages from http to https
|
2020-01-26 17:30:40 +00:00 |
|
Makefile
|
biology/Makefile: Add biolibc-tools
|
2021-08-31 15:56:42 +00:00 |
39bd4376cd