83147ffa68
from including perl5/buildlink3.mk. These packages just need the Perl interpreter, and can just add "perl" to USE_TOOLS instead.
48 lines
1.5 KiB
Makefile
48 lines
1.5 KiB
Makefile
# $NetBSD: Makefile,v 1.9 2005/07/16 19:10:38 jlam Exp $
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#
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DISTNAME= MUMmer3.15
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PKGNAME= mummer-3.15
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PKGREVISION= 1
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.tigr.org/pub/software/MUMmer/
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MAINTAINER= hdp@cs.nmsu.edu
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HOMEPAGE= http://www.tigr.org/software/mummer/
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COMMENT= System for aligning whole genome sequences
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WRKSRC= ${WRKDIR}/${DISTNAME}
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USE_TOOLS+= gmake perl:run
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MAKE_ENV+= SH="${SH}"
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MAKE_ENV+= PERL="${PERL5}"
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INSTALLATION_DIRS= bin
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do-install:
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.for PROGRAM in annotate combineMUMs gaps mgaps mummer repeat-match \
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show-aligns show-coords show-tiling
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${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${PREFIX}/bin
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.endfor
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.for PROGRAM in postnuc postpro prenuc prepro
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${INSTALL_PROGRAM} ${WRKSRC}/aux_bin/${PROGRAM} ${PREFIX}/bin
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.endfor
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${INSTALL_DATA_DIR} ${PREFIX}/share/mummer
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.for SCRIPT in run-mummer1 run-mummer3 nucmer promer exact-tandems \
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mummerplot nucmer2xfig
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${INSTALL_SCRIPT} ${WRKSRC}/${SCRIPT} ${PREFIX}/share/mummer
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.endfor
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${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/mummer
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.for HTML in covplot.gif dotplot.gif email.jpg gaps.gif index.html \
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manual_logo.gif mgaps.gif nuc_proex.gif nucex.gif osi.gif \
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pro_proex.gif
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${INSTALL_DATA} ${WRKSRC}/docs/htmlmanual/${HTML} \
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${PREFIX}/share/doc/html/mummer
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.endfor
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${INSTALL_DATA_DIR} ${PREFIX}/share/doc/mummer
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.for DOC in maxmat3man.tex maxmat3src.pdf nucmer.README \
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optionman.sty promer.README run-mummer1.README run-mummer3.README \
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skaff.sty
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${INSTALL_DATA} ${WRKSRC}/docs/${DOC} ${PREFIX}/share/doc/mummer
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.endfor
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.include "../../mk/bsd.pkg.mk"
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