bce1e613e1
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
66 lines
1.9 KiB
Text
66 lines
1.9 KiB
Text
@comment $NetBSD: PLIST,v 1.1 2018/12/22 21:52:06 bacon Exp $
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bin/clone_filter
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bin/count_fixed_catalog_snps.py
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bin/cstacks
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bin/denovo_map.pl
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bin/gstacks
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bin/integrate_alignments.py
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bin/kmer_filter
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bin/phasedstacks
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bin/populations
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bin/process_radtags
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bin/process_shortreads
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bin/ref_map.pl
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bin/sstacks
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bin/stacks-dist-extract
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bin/stacks-gdb
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bin/stacks-integrate-alignments
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bin/tsv2bam
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bin/ustacks
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share/stacks/php/CatalogClass.php
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share/stacks/php/Locus.php
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share/stacks/php/ajax.js
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share/stacks/php/annotate.js
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share/stacks/php/annotate_marker.php
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share/stacks/php/catalog.php
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share/stacks/php/catalog_genotypes.php
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share/stacks/php/constants.php.dist
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share/stacks/php/correct_genotype.php
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share/stacks/php/correct_genotypes.php
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share/stacks/php/db_functions.php
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share/stacks/php/export.js
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share/stacks/php/export_batch.php
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share/stacks/php/fst_view.php
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share/stacks/php/hapstat_view.php
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share/stacks/php/header.php
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share/stacks/php/images/caret-d.png
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share/stacks/php/images/caret-u.png
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share/stacks/php/images/excel_icon.png
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share/stacks/php/images/l-arrow-disabled.png
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share/stacks/php/images/l-arrow.png
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share/stacks/php/images/r-arrow-disabled.png
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share/stacks/php/images/r-arrow.png
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share/stacks/php/images/stacks_bg.png
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share/stacks/php/images/stacks_logo_rev_small.png
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share/stacks/php/index.php
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share/stacks/php/last_modified.php
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share/stacks/php/phist_view.php
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share/stacks/php/pop_view.php
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share/stacks/php/population_view.js
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share/stacks/php/samples.php
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share/stacks/php/sequence_blast.php
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share/stacks/php/stack_view.php
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share/stacks/php/stacks.css
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share/stacks/php/stacks.js
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share/stacks/php/stacks_functions.php
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share/stacks/php/sumstat_view.php
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share/stacks/php/tag.php
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share/stacks/php/tags.php
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share/stacks/php/version.php
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share/stacks/php/view_sequence.php
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share/stacks/sql/catalog_index.sql
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share/stacks/sql/chr_index.sql
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share/stacks/sql/mysql.cnf.dist
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share/stacks/sql/stacks.sql
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share/stacks/sql/tag_index.sql
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@pkgdir share/stacks/php/export
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