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adam 1d7a39df12 bcftools: added version 1.9 
BCFtools is a program for variant calling and manipulating files in the Variant
Call Format (VCF) and its binary counterpart BCF. All commands work
transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
In order to avoid tedious repetion, throughout this document we will use "VCF"
and "BCF" interchangeably, unless specifically noted.

Most commands accept VCF, bgzipped VCF and BCF with filetype detected
automatically even when streaming from a pipe. Indexed VCF and BCF work in all
situations. Unindexed VCF and BCF and streams work in most, but not all
situations. In general, whenever multiple VCFs are read simultaneously, they
must be indexed and therefore also compressed.
2018-11-15 09:21:24 +00:00
..
arka Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
azara Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
bcftools bcftools: added version 1.9 2018-11-15 09:21:24 +00:00
bioperl Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
bodr Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
bwa Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
cdhit Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
fastDNAml Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
genesplicer Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
gp Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
gromacs Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
htslib htslib: updated to 1.9 2018-11-06 10:24:14 +00:00
lucy Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
mopac Fix build. 2015-12-26 22:36:07 +00:00
mpqc Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
mummer Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
ncbi-blast+ Recursive revbump from textproc/icu-62.1 2018-07-20 03:33:47 +00:00
nut Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
openbabel Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
p5-Bio-ASN1-EntrezGene Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
pdbalign Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
phylip Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
plink Cleanup: replace curly braces with parentheses. 2018-01-01 01:10:13 +00:00
plinkseq biology/plinkseq: Requires c++11 to build with protobuf-3.6.0 2018-08-04 21:42:28 +00:00
primer3 Mark packages that require C++03 (or the GNU variants) if they fail with 2018-07-18 00:06:10 +00:00
profit Moved documentation to share/doc/${PKGBASE}. Bumped PKGREVISION. 2016-07-24 21:11:52 +00:00
puzzle Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
py-mol extend PYTHON_VERSIONS_ for Python 3.7 2018-07-03 05:03:01 +00:00
py-pydicom py-pydicom: Import py-pydicom-1.2.0 as biology/py-pydicom 2018-10-31 20:15:40 +00:00
rasmol Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
samtools samtools: updated to 1.9 2018-11-06 10:49:41 +00:00
sewer Sort PLIST files. 2018-01-01 22:29:15 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
xylem xylem: build fix 2018-09-29 12:49:55 +00:00
Makefile bcftools: added version 1.9 2018-11-15 09:21:24 +00:00