pkgsrc/parallel
asau c6151df67b Update to OpenMPI 1.10.4
Prompted by Nicolas Joly in private mail.


1.10.4 - 01 Sept 2016
------

- Fix assembler support for MIPS
- Improve memory handling for temp buffers in collectives
- Fix [all]reduce with non-zero lower bound datatypes
  Thanks Hristo Iliev for the report
- Fix non-standard ddt handling. Thanks Yuki Matsumoto for the report
- Various libnbc fixes. Thanks Yuki Matsumoto for the report
- Fix typos in request RMA bindings for Fortran. Thanks to @alazzaro
  and @vondele for the assist
- Various bug fixes and enhancements to collective support
- Fix predefined types mapping in hcoll
- Revive the coll/sync component to resolve unexpected message issues
  during tight loops across collectives
- Fix typo in wrapper compiler for Fortran static builds


1.10.3 - 15 June 2016
------

- Fix zero-length datatypes.  Thanks to Wei-keng Liao for reporting
  the issue.
- Minor manpage cleanups
- Implement atomic support in OSHMEM/UCX
- Fix support of MPI_COMBINER_RESIZED. Thanks to James Ramsey
  for the report
- Fix computation of #cpus when --use-hwthread-cpus is used
- Add entry points for Allgatherv, iAllgatherv, Reduce, and iReduce
  for the HCOLL library
- Fix an HCOLL integration bug that could signal completion of request
  while still being worked
- Fix computation of cores when SMT is enabled. Thanks to Ben Menadue
  for the report
- Various USNIC fixes
- Create a datafile in the per-proc directory in order to make it
  unique per communicator. Thanks to Peter Wind for the report
- Fix zero-size malloc in one-sided pt-to-pt code. Thanks to Lisandro
  Dalcin for the report
- Fix MPI_Get_address when passed MPI_BOTTOM to not return an error.
  Thanks to Lisandro Dalcin for the report
- Fix MPI_TYPE_SET_ATTR with NULL value. Thanks to Lisandro Dalcin for
  the report
- Fix various Fortran08 binding issues
- Fix memchecker no-data case. Thanks to Clinton Stimpson for the report
- Fix CUDA support under OS-X
- Fix various OFI/MTL integration issues
- Add MPI_T man pages
- Fix one-sided pt-to-pt issue by preventing communication from happening
  before a target enters a fence, even in the no-precede case
- Fix a bug that disabled Totalview for MPMD use-case
- Correctly support MPI_UNWEIGHTED in topo-graph-neighbors. Thanks to
  Jun Kudo for the report
- Fix singleton operations under SLURM when PMI2 is enabled
- Do not use MPI_IN_PLACE in neighborhood collectives for non-blocking
  collectives (libnbc). Thanks to Jun Kudo for the report
- Silence autogen deprecation warnings for newer versions of Perl
- Do not return MPI_ERR_PENDING from collectives
- Use type int* for MPI_WIN_DISP_UNIT, MPI_WIN_CREATE_FLAVOR, and MPI_WIN_MODEL.
  Thanks to Alastair McKinstry for the report
- Fix register_datarep stub function in IO/OMPIO. Thanks to Eric
  Chamberland for the report
- Fix a bus error on MPI_WIN_[POST,START] in the shared memory one-sided component
- Add several missing MPI_WIN_FLAVOR constants to the Fortran support
- Enable connecting processes from different subnets using the openib BTL
- Fix bug in basic/barrier algorithm in OSHMEM
- Correct process binding for the --map-by node case
- Include support for subnet-to-subnet routing over InfiniBand networks
- Fix usnic resource check
- AUTHORS: Fix an errant reference to Subversion IDs
- Fix affinity for MPMD jobs running under LSF
- Fix many Fortran binding bugs
- Fix `MPI_IN_PLACE`-related bugs
- Fix PSM/PSM2 support for singleton operations
- Ensure MPI transports continue to progress during RTE barriers
- Update HWLOC to 1.9.1 end-of-series
- Fix a bug in the Java command line parser when the
  -Djava.library.path options was given by the user
- Update the MTL/OFI provider selection behavior
- Add support for clock_gettime on Linux.
- Correctly detect and configure for Solaris Studio 12.5
  beta compilers
- Correctly compute #slots when -host is used for MPMD case
- Fix a bug in the hcoll collectives due to an uninitialized field
- Do not set a binding policy when oversubscribing a node
- Fix hang in intercommunicator operations when oversubscribed
- Speed up process termination during MPI_Abort
- Disable backtrace support by default in the PSM/PSM2 libraries to
  prevent unintentional conflicting behavior.



1.10.2: 26 Jan 2016
-------------------

 **********************************************************************
 *  OSHMEM is now 1.2 compliant
 **********************************************************************

- Fix NBC_Copy for legitimate zero-size messages
- Fix multiple bugs in OSHMEM
- Correctly handle mpirun --host <user>@<ip-address>
- Centralize two MCA params to avoid duplication between OMPI and
  OSHMEM layers: opal_abort_delay and opal_abort_print_stack
- Add support for Fujitsu compilers
- Add UCX support for OMPI and OSHMEM
- Correctly handle oversubscription when not given directives
  to permit it. Thanks to @ammore1 for reporting it
- Fix rpm spec file to not include the /usr directory
- Add Intel HFI1 default parameters for the openib BTL
- Resolve symbol conflicts in the PSM2 library
- Add ability to empty the rgpusm cache when full if requested
- Fix another libtool bug when -L requires a space between it
  and the path. Thanks to Eric Schnetter for the patch.
- Add support for OSHMEM v1.2 APIs
- Improve efficiency of oshmem_preconnect_all algorithm
- Fix bug in buffered sends support
- Fix double free in edge case of mpirun. Thanks to @jsharpe for
  the patch
- Multiple one-sided support fixes
- Fix integer overflow in the tuned "reduce" collective when
  using buffers larger than INT_MAX in size
- Fix parse of user environment variables in mpirun. Thanks to
  Stefano Garzarella for the patch
- Performance improvements in PSM2 support
- Fix NBS iBarrier for inter-communicators
- Fix bug in vader BTL during finalize
- Improved configure support for Fortran compilers
- Fix rank_file mapper to support default --slot-set. Thanks
  to Matt Thompson for reporting it
- Update MPI_Testsome man page. Thanks to Eric Schnetter for
  the suggestion
- Fix missing resize of the returned type for subarray and
  darray types. Thanks to Keith Bennett and Dan Garmann for
  reporting it
- Fix Java support on OSX 10.11. Thanks to Alexander Daryin
  for reporting the problem
- Fix some compilation issues on Solaris 11.2. Thanks to
  Paul Hargrove for his continued help in such areas
2016-10-23 14:02:28 +00:00
..
clusterit Fix missing/broken rcsids. 2015-12-29 04:04:26 +00:00
dqs Add SHA512 digests for distfiles for parallel category 2015-11-02 23:46:12 +00:00
dsh Add SHA512 digests for distfiles for parallel category 2015-11-02 23:46:12 +00:00
ganglia-monitor-core Remove the stability entity, it has no meaning outside of an official context. 2016-06-08 10:16:50 +00:00
gridscheduler Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. 2016-07-09 06:38:30 +00:00
hwloc Update to hwloc 1.11.4. 2016-10-21 10:35:28 +00:00
linda Add SHA512 digests for distfiles for parallel category 2015-11-02 23:46:12 +00:00
mpi-ch Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. 2016-07-09 06:38:30 +00:00
openmpi Update to OpenMPI 1.10.4 2016-10-23 14:02:28 +00:00
openpa Add SHA512 digests for distfiles for parallel category 2015-11-02 23:46:12 +00:00
p5-Parallel-Pvm Bump PKGREVISION for perl-5.24. 2016-06-08 19:22:13 +00:00
paexec Add SHA512 digests for distfiles for parallel category 2015-11-02 23:46:12 +00:00
parallel Update parallel/parallel to 20160822 2016-09-13 09:41:29 +00:00
pdsh Update parallel/pdsh to 2.31. 2016-09-19 09:24:52 +00:00
pvm3 Add SHA512 digests for distfiles for parallel category 2015-11-02 23:46:12 +00:00
py-billiard Switch to MASTER_SITES_PYPI. 2016-06-08 17:43:20 +00:00
sge Call sun-iss sissl-1.1 to match OSI. 2016-10-03 11:48:31 +00:00
slurm Bump PKGREVISION for perl-5.24.0 for everything mentioning perl. 2016-07-09 06:38:30 +00:00
threadingbuildingblocks Add SHA512 digests for distfiles for parallel category 2015-11-02 23:46:12 +00:00
Makefile + dsh 2014-01-10 22:45:11 +00:00